# NUMBER of proteins with Oi-value	6714
# NUMBER of proteins in calculation	2037
# TOTAL MOLECULES 8148000	(based on average of	4000	molecules per protein)
# ID	OI_VALUE	PROTEINPROPHET_PROBABILITY	TOTAL_SPECTRAL_COUNTS	APEX_PROTEIN_ABUNDANCE	NUMBER_OF_DEGENERATE_PROTEINS	IDS_DEGENERATE_PROTEINS	ANNOTATION
YJR111C	8.08	0.84	4	581.3435	1	YJR111C	YJR111C SGDID:S000003872,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondria, Chr X from 636622-635771, reverse complement, Uncharacterized ORF
YFR040W	38.708	0.89	12	385.7229	1	YFR040W	SAP155 SGDID:S000001936,Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap185p, and Sap190p, Chr VI from 234229-237237, Verified ORF
YPL150W	35.21	0.74	1	29.3812	1	YPL150W	YPL150W SGDID:S000006071,Hypothetical protein, Chr XVI from 268187-270892, Uncharacterized ORF
YNL074C	13.34	1.00	5	523.9852	1	YNL074C	MLF3 SGDID:S000005018,Serine-rich protein of unknown function; overproduction suppresses the growth inhibition caused by exposure to the immunosuppressant leflunomide, Chr XIV from 488125-486767, reverse complement, Verified ORF
YCR088W	26.97	1.00	144	7464.2548	1	YCR088W	ABP1 SGDID:S000000684,Actin-binding protein of the cortical actin cytoskeleton, important for activation of the Arp2\3 complex that plays a key role actin in cytoskeleton organization, Chr III from 265065-266843, Verified ORF
YIL115C	63.178	1.00	7	154.8948	1	YIL115C	NUP159 SGDID:S000001377,Subunit of the nuclear pore complex that is found exclusively on the cytoplasmic side, forms a subcomplex with Nup82p and Nsp1p, required for mRNA export, Chr IX from 148706-144324, reverse complement, Verified ORF
YOL138C	45.158	1.00	7	216.7046	1	YOL138C	YOL138C SGDID:S000005498,Hypothetical protein, Chr XV from 65350-61325, reverse complement, Uncharacterized ORF
YBR267W	12.969	0.99	3	320.151	1	YBR267W	REI1 SGDID:S000000471,Protein of unknown function involved in bud growth in the mitotic signaling network; proposed negative regulator of Swe1p and Gin4p; contains dispersed C2H2 zinc finger domains, Chr II from 739836-741017, Verified ORF
YNL044W	5.07	1.00	10	2757.3821	1	YNL044W	YIP3 SGDID:S000004989,Protein localized to COPII vesicles, proposed to be involved in ER to Golgi transport; interacts with members of the Rab GTPase family and Yip1p, Chr XIV from 545269-545292,545372-545878, Verified ORF
YDR395W	26.91	1.00	19	987.0628	1	YDR395W	SXM1 SGDID:S000002803,Nuclear transport factor (karyopherin) involved in protein transport between the cytoplasm and nucleoplasm; similar to Nmd5p, Cse1p, Lph2p, and the human cellular apoptosis susceptibility protein, CAS1, Chr IV from 1263316-1266150, Verified ORF
YGL133W	57.888	0.95	10	229.4245	1	YGL133W	ITC1 SGDID:S000003101,Component of the ATP-dependent Isw2p-Itc1p chromatin remodeling complex, required for repression of a-specific genes, repression of early meiotic genes during mitotic growth, and repression of INO1, Chr VII from 257712-261506, Verified ORF
YGR129W	10.66	1.00	6	786.8626	1	YGR129W	SYF2 SGDID:S000003361,Component of the spliceosome complex involved in pre-mRNA splicing; involved in regulation of cell cycle progression, Chr VII from 750405-751052, Verified ORF
YER067W	4.44	0.84	8	2115.8808	1	YER067W	YER067W SGDID:S000000869,Hypothetical protein, Chr V from 292064-292549, Uncharacterized ORF
YGL067W	12.76	0.90	1	98.6045	1	YGL067W	NPY1 SGDID:S000003035,NADH diphosphatase (pyrophosphatase), hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes, Chr VII from 376104-377258, Verified ORF
YCL050C	10.53	1.00	56	7434.7191	1	YCL050C	APA1 SGDID:S000000555,Diadenosine 5',5''-P1,P4-tetraphosphate phosphorylase I (AP4A phosphorylase), involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; has similarity to Apa2p, Chr III from 38801-37836, reverse complement, Verified ORF
YML048W	18.597	1.00	5	375.8651	1	YML048W	GSF2 SGDID:S000004511,ER localized integral membrane protein that may promote secretion of certain hexose transporters, including Gal2p; involved in glucose-dependent repression, Chr XIII from 178426-179637, Verified ORF
YCL043C	23.119	1.00	187	11307.7832	1	YCL043C	PDI1 SGDID:S000000548,Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen, essential for the formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds, Chr III from 50221-48653, reverse complement, Verified ORF
YNR035C	13.58	1.00	21	2161.8444	1	YNR035C	ARC35 SGDID:S000005318,Subunit of the ARP2\3 complex, which is required for the motility and integrity of cortical actin patches; required for cortical localization of calmodulin, Chr XIV from 694049-693021, reverse complement, Verified ORF
YBR130C	17.18	0.97	7	552.5244	1	YBR130C	SHE3 SGDID:S000000334,Protein that acts as an adaptor between Myo4p and the She2p-mRNA complex; part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud; also required for cortical ER inheritance, Chr II from 496863-495586, reverse complement, Verified ORF
YOL014W	2	0.95	10	6640.4654	1	YOL014W	YOL014W SGDID:S000005374,Hypothetical protein, Chr XV from 299694-300068, Uncharacterized ORF
YLR057W	42.454	0.93	3	91.8735	1	YLR057W	YLR057W SGDID:S000004047,Putative protein of unknown function; YLR050C is not an essential gene, Chr XII from 255307-257856, Uncharacterized ORF
YFR034C	9.022	0.85	1	131.7106	1	YFR034C	PHO4 SGDID:S000001930,Basic helix-loop-helix (bHLH) transcription factor; binds cooperatively with Pho2p to the PHO5 promoter; function is regulated by phosphorylation at multiple sites and by phosphate availability, Chr VI from 225946-225008, reverse complement, Verified ORF
YPR072W	24.278	0.89	2	102.4972	1	YPR072W	NOT5 SGDID:S000006276,Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation, Chr XVI from 690104-691786, Verified ORF
YMR092C	23.7	1.00	15	884.8055	1	YMR092C	AIP1 SGDID:S000004698,Actin cortical patch component, interacts with the actin depolymerizing factor cofilin; required to restrict cofilin localization to cortical patches; contains WD repeats, Chr XIII from 453478-451631, reverse complement, Verified ORF
YOR232W	14.065	1.00	23	2286.0883	1	YOR232W	MGE1 SGDID:S000005758,Protein of the mitochondrial matrix involved in protein import into mitochondria; acts as a cochaperone and a nucleotide release factor for Ssc1p; homolog of E. coli GrpE, Chr XV from 774574-775260, Verified ORF
YGL021W	35.324	0.99	7	274.2636	1	YGL021W	ALK1 SGDID:S000002989,Putative Ser-Thr protein kinase, belongs to the haspin family of kinases; contains a leucine zipper motif; may function in mitosis, Chr VII from 454790-457072, Verified ORF
YHL034C	13.47	1.00	61	6330.9247	1	YHL034C	SBP1 SGDID:S000001026,Nucleolar single-strand nucleic acid binding protein; associates with small nuclear RNAs, Chr VIII from 34075-33191, reverse complement, Verified ORF
YDR418W	7.88	1.00	209	37078.7411	2	YDR418W,YEL054C	RPL12B SGDID:S000002826,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins, Chr IV from 1301608-1302105, Verified ORF
YOR317W	28.619	1.00	34	1660.846	1	YOR317W	FAA1 SGDID:S000005844,Long chain fatty acyl-CoA synthetase with a preference for C12:0-C16:0 fatty acids; involved in the activation of imported fatty acids; localized to both lipid particles and mitochondrial outer membrane; essential for stationary phase, Chr XV from 909340-911442, Verified ORF
YGR162W	37.4	1.00	23	859.7281	1	YGR162W	TIF4631 SGDID:S000003394,Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4632p, Chr VII from 824064-826922, Verified ORF
YOR109W	44.484	1.00	9	282.8417	1	YOR109W	INP53 SGDID:S000005635,Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in a TGN (trans Golgi network)-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches, Chr XV from 525279-528602, Verified ORF
YKL193C	15.73	0.91	1	80.8756	1	YKL193C	SDS22 SGDID:S000001676,Conserved nuclear regulatory subunit of Glc7p type 1 protein serine-threonine phosphatase (PP1), functions positively with Glc7p to promote dephosphorylation of nuclear substrates required for chromosome transmission during mitosis, Chr XI from 79887-78871, reverse complement, Verified ORF
YKR090W	32.138	0.98	1	42.6296	1	YKR090W	PXL1 SGDID:S000001798,LIM domain-containing protein that localizes to sites of polarized growth, required for selection and\or maintenance of polarized growth sites, may modulate signaling by the GTPases Cdc42p and Rho1p; has similarity to metazoan paxillin, Chr XI from 608588-610708, Verified ORF
YDL066W	23.84	1.00	72	4222.1256	1	YDL066W	IDP1 SGDID:S000002224,Mitochondrial NADP-specific isocitrate dehydrogenase, catalyzes the oxidation of isocitrate to alpha-ketoglutarate; not required for mitochondrial respiration and may function to divert alpha-ketoglutarate to biosynthetic processes, Chr IV from 334835-336121, Verified ORF
YOR162C	32.41	0.98	4	169.0876	1	YOR162C	YRR1 SGDID:S000005688,Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrm1p, acting on an overlapping set of target genes, Chr XV from 641993-639561, reverse complement, Verified ORF
YDL166C	11.39	0.75	8	736.4316	1	YDL166C	FAP7 SGDID:S000002325,Essential NTPase required for small ribosome subunit synthesis, mediates processing of the 20S pre-rRNA at site D in the cytoplasm but associates only transiently with 43S preribosomes via Rps14p, may be the endonuclease for site D, Chr IV from 164043-163450, reverse complement, Verified ORF
YGL070C	3.89	0.98	1	352.1935	1	YGL070C	RPB9 SGDID:S000003038,RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site; involved in telomere maintenance, Chr VII from 374830-374462, reverse complement, Verified ORF
YJL200C	31.209	1.00	24	1075.0689	1	YJL200C	ACO2 SGDID:S000003736,Putative mitochondrial aconitase isozyme; similarity to Aco1p, an aconitase required for the TCA cycle; expression induced during growth on glucose, by amino acid starvation via Gcn4p, and repressed on ethanol, Chr X from 58813-56444, reverse complement, Uncharacterized ORF
YBR249C	11.49	1.00	58	7056.8823	1	YBR249C	ARO4 SGDID:S000000453,3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by tyrosine, Chr II from 717989-716877, reverse complement, Verified ORF
YKL010C	49.676	1.00	11	309.5643	1	YKL010C	UFD4 SGDID:S000001493,Ubiquitin-protein ligase (E3) that interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins, Chr XI from 425518-421067, reverse complement, Verified ORF
YLR045C	38.189	0.99	3	108.7234	1	YLR045C	STU2 SGDID:S000004035,Microtubule-associated protein (MAP) of the XMAP215\Dis1 family; regulates microtubule dynamics during spindle orientation and metaphase chromosome alignment; interacts with spindle pole body component Spc72p, Chr XII from 237704-235038, reverse complement, Verified ORF
YJL076W	52.018	1.00	10	268.7517	1	YJL076W	NET1 SGDID:S000003612,Core subunit of the RENT complex, which is a complex involved in nucleolar silencing and telophase exit; stimulates transcription by RNA polymerase I and regulates nucleolar structure, Chr X from 295162-298731, Verified ORF
YPL183C	51.394	1.00	34	924.8502	1	YPL183C	YPL183C SGDID:S000006104,Hypothetical protein, Chr XVI from 202535-199494, reverse complement, Uncharacterized ORF
YGR003W	35.059	1.00	5	199.3771	1	YGR003W	CUL3 SGDID:S000003235,Ubiquitin-protein ligase, member of the cullin family with similarity to Cdc53p and human CUL3; null mutation has no apparent phenotype, Chr VII from 500136-502370, Verified ORF
YDL111C	6.09	0.98	1	224.9643	1	YDL111C	RRP42 SGDID:S000002269,Protein involved in rRNA processing; component of the exosome 3- 5 exonuclease complex with Rrp4p, Rrp41p, Rrp43p and Dis3p, Chr IV from 264110-263313, reverse complement, Verified ORF
YPR148C	20.81	1.00	10	671.7889	1	YPR148C	YPR148C SGDID:S000006352,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern, Chr XVI from 828136-826829, reverse complement, Uncharacterized ORF
YMR131C	16.73	1.00	10	835.6202	1	YMR131C	RRB1 SGDID:S000004738,Essential nuclear protein involved in early steps of ribosome biogenesis; physically interacts with the ribosomal protein Rpl3p, Chr XIII from 534697-533162, reverse complement, Verified ORF
YMR109W	42.679	1.00	17	556.8517	1	YMR109W	MYO5 SGDID:S000004715,One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization, Chr XIII from 486586-490245, Verified ORF
YGR271W	82.277	1.00	6	101.9477	1	YGR271W	SLH1 SGDID:S000003503,Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses, Chr VII from 1031797-1037700, Verified ORF
YNL251C	17.5	0.99	3	237.2593	1	YNL251C	NRD1 SGDID:S000005195,RNA-binding protein that interacts with the C-terminal domain of the RNA polymerase II large subunit (Rpo21p), required for transcription termination and 3' end maturation of nonpolyadenylated RNAs, Chr XIV from 174316-172589, reverse complement, Verified ORF
YGL060W	21.7	0.66	2	85.0391	1	YGL060W	YBP2 SGDID:S000003028,Protein with a role in resistance to oxidative stress; has similarity to Ybp1p, which is involved in regulation of the transcription factor Yap1p via oxidation of specific cysteine residues, Chr VII from 390070-391995, Verified ORF
YMR310C	10.39	0.94	2	252.9572	1	YMR310C	YMR310C SGDID:S000004927,Hypothetical protein, Chr XIII from 896668-895715, reverse complement, Uncharacterized ORF
YGR173W	18.59	1.00	11	827.2146	1	YGR173W	RBG2 SGDID:S000003405,Protein with similarity to mammalian developmentally regulated GTP-binding protein, Chr VII from 843859-844965, Uncharacterized ORF
YOL151W	19.737	0.98	1	69.4144	1	YOL151W	GRE2 SGDID:S000005511,NADPH-dependent methylglyoxal reductase (D-lactaldehyde dehydrogenase); stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway, Chr XV from 43693-44721, Verified ORF
YLR362W	22.947	0.99	6	361.8807	1	YLR362W	STE11 SGDID:S000004354,Signal transducing MEK kinase involved in pheromone response and pseudohyphal\invasive growth pathways, where it phosphorylates Ste7p, and the high osmolarity response pathway, via phosphorylation of Pbs2p; regulated by Ste20p and Ste50p, Chr XII from 849865-852018, Verified ORF
YBR252W	5.14	0.93	5	1264.721	1	YBR252W	DUT1 SGDID:S000000456,dUTPase, catalyzes the hydrolysis of dUTP to dUMP and PPi and thereby prevents the incorporation of uracil into DNA during replication, Chr II from 722606-723049, Verified ORF
YMR105C	27.46	0.99	8	403.2083	1	YMR105C	PGM2 SGDID:S000004711,Phosphoglucomutase, catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism; functions as the acceptor for a Glc-phosphotransferase, Chr XIII from 477605-475896, reverse complement, Verified ORF
YKL032C	6.45	0.70	1	151.7201	1	YKL032C	IXR1 SGDID:S000001515,Protein that binds DNA containing intrastrand cross-links formed by cisplatin, contains two HMG (high mobility group box) domains, which confer the ability to bend cisplatin-modified DNA; mediates aerobic transcriptional repression of COX5b, Chr XI from 381501-379708, reverse complement, Verified ORF
YBR086C	27.038	0.93	4	192.3416	1	YBR086C	IST2 SGDID:S000000290,Plasma membrane protein that may be involved in osmotolerance, localizes to the mother cell in small-budded cells and to the bud in medium- and large-budded cells; mRNA is transported to the bud tip by an actomyosin-driven process, Chr II from 423035-420195, reverse complement, Verified ORF
YPL262W	16.54	1.00	28	2366.614	1	YPL262W	FUM1 SGDID:S000006183,Fumarase, converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial localization determined by the N-terminal mitochondrial targeting sequence and protein conformation, Chr XVI from 47336-48802, Verified ORF
YKL168C	27.85	0.76	1	38.1498	1	YKL168C	KKQ8 SGDID:S000001651,Putative serine\threonine protein kinase with unknown cellular role, Chr XI from 133497-131293, reverse complement, Verified ORF
YLR361C-A	3.77	0.99	8	2936.8971	1	YLR361C-A	YLR361C-A SGDID:S000028845,Identified by expression profiling and mass spectrometry, Chr XII from 849678-849382, reverse complement, Uncharacterized ORF
YDL202W	14.449	1.00	5	483.7679	1	YDL202W	MRPL11 SGDID:S000002361,Mitochondrial ribosomal protein of the large subunit, Chr IV from 98476-99225, Verified ORF
YDR104C	57.78	1.00	6	145.1705	1	YDR104C	SPO71 SGDID:S000002511,Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis, Chr IV from 664907-661170, reverse complement, Verified ORF
YOR027W	33.099	1.00	190	8024.9741	1	YOR027W	STI1 SGDID:S000005553,Hsp90 cochaperone, interacts with the Ssa group of the cytosolic Hsp70 chaperones; activates the ATPase activity of Ssa1p; homolog of mammalian Hop protein, Chr XV from 381053-382822, Verified ORF
YJL123C	26.588	1.00	24	1261.9161	1	YJL123C	YJL123C SGDID:S000003659,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to COPI-coated vesicles (early Golgi); YJL123C is a non-essential gene, Chr X from 189361-187925, reverse complement, Uncharacterized ORF
YER075C	33.67	0.94	2	78.0584	1	YER075C	PTP3 SGDID:S000000877,Phosphotyrosine-specific protein phosphatase involved in the inactivation of mitogen-activated protein kinase (MAPK) during osmolarity sensing; dephosporylates Hog1p MAPK and regulates its localization; localized to the cytoplasm, Chr V from 311195-308409, reverse complement, Verified ORF
YMR086W	37.407	0.81	3	90.8151	1	YMR086W	YMR086W SGDID:S000004692,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, Chr XIII from 439207-442089, Uncharacterized ORF
YDR134C	0.64	0.97	10	21188.3272	2	YLR110C,YDR134C	YDR134C SGDID:S000002541,Hypothetical protein, Chr IV from 721478-721068, reverse complement, pseudogene
YNL071W	21.29	1.00	67	4399.5074	1	YNL071W	LAT1 SGDID:S000005015,Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex, which catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA, Chr XIV from 491524-492972, Verified ORF
YBR221C	15.57	1.00	41	3681.291	1	YBR221C	PDB1 SGDID:S000000425,E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved multi-protein complex found in mitochondria, Chr II from 666248-665148, reverse complement, Verified ORF
YBL086C	20.82	0.96	8	515.686	1	YBL086C	YBL086C SGDID:S000000182,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, Chr II from 62599-61199, reverse complement, Uncharacterized ORF
YGL006W	44.118	0.88	8	223.0805	1	YGL006W	PMC1 SGDID:S000002974,Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium, Chr VII from 485925-489446, Verified ORF
YKL204W	18.61	0.85	1	63.8524	1	YKL204W	EAP1 SGDID:S000001687,eIF4E-associated protein, binds eIF4E and inhibits cap-dependent translation, also functions independently of eIF4E to maintain genetic stability; plays a role in cell growth, implicated in the TOR signaling cascade, Chr XI from 53705-55603, Verified ORF
YHR051W	9.33	0.67	6	602.3505	1	YHR051W	COX6 SGDID:S000001093,Subunit VI of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; expression is regulated by oxygen levels, Chr VIII from 209699-210145, Verified ORF
YPL171C	15.25	0.83	2	152.1749	1	YPL171C	OYE3 SGDID:S000006092,Widely conserved NADPH oxidoreductase containing flavin mononucleotide (FMN), homologous to Oye2p with slight differences in ligand binding and catalytic properties; may be involved in sterol metabolism, Chr XVI from 227370-226168, reverse complement, Verified ORF
YDL116W	27.98	0.86	9	386.7213	1	YDL116W	NUP84 SGDID:S000002274,Subunit of the nuclear pore complex (NPC), forms a subcomplex with Nup85p, Nup120p, Nup145p-C, Sec13p, and Seh1p that plays a role in nuclear mRNA export and NPC biogenesis, Chr IV from 251566-253746, Verified ORF
YPR124W	11.688	1.00	12	1435.3108	1	YPR124W	CTR1 SGDID:S000006328,High-affinity copper transporter of the plasma membrane, mediates nearly all copper uptake under low copper conditions; transcriptionally induced at low copper levels and degraded at high copper levels, Chr XVI from 786204-787424, Verified ORF
YGL167C	28.099	1.00	22	1094.5528	1	YGL167C	PMR1 SGDID:S000003135,High affinity Ca2+\Mn2+ P-type ATPase required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease, Chr VII from 190474-187622, reverse complement, Verified ORF
YHR119W	45.49	1.00	13	399.5142	1	YHR119W	SET1 SGDID:S000001161,Histone methyltransferase, subunit of the COMPASS (Set1C) complex which methylates histone H3 on lysine 4; required in transcriptional silencing near telomeres and at the silent mating type loci; contains a SET domain, Chr VIII from 346046-349288, Verified ORF
YLL054C	30.205	0.99	11	504.0271	1	YLL054C	YLL054C SGDID:S000003977,Putative protein of unknown function with similarity to Pip2p, an oleate-specific transcriptional activator of peroxisome proliferation; YLL054C is not an essential gene, Chr XII from 35203-32894, reverse complement, Uncharacterized ORF
YDL055C	16.828	1.00	318	26417.9752	1	YDL055C	PSA1 SGDID:S000002213,GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase), synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure, Chr IV from 356759-355674, reverse complement, Verified ORF
YNL307C	15.4	1.00	5	453.8937	1	YNL307C	MCK1 SGDID:S000005251,Protein serine\threonine\tyrosine (dual-specificity) kinase involved in control of chromosome segregation and in regulating entry into meiosis; related to mammalian glycogen synthase kinases of the GSK-3 family, Chr XIV from 57573-56446, reverse complement, Verified ORF
YDR378C	6.17	1.00	10	2265.7904	1	YDR378C	LSM6 SGDID:S000002786,Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA, Chr IV from 1229601-1229341, reverse complement, Verified ORF
YPR080W	16.899	1.00	1017	84132.7063	2	YBR118W,YPR080W	TEF1 SGDID:S000006284,Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes, Chr XVI from 700592-701968, Verified ORF
YOL019W	20.51	0.95	1	64.7534	1	YOL019W	YOL019W SGDID:S000005379,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole, Chr XV from 288899-290554, Uncharacterized ORF
YGR240C	39.77	1.00	382	13428.0418	1	YGR240C	PFK1 SGDID:S000003472,Alpha subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes, Chr VII from 973739-970776, reverse complement, Verified ORF
YMR295C	2.7	0.99	8	4100.7786	1	YMR295C	YMR295C SGDID:S000004910,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and bud, Chr XIII from 858889-858296, reverse complement, Uncharacterized ORF
YDR472W	12.77	1.00	3	328.4242	1	YDR472W	TRS31 SGDID:S000002880,One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic, Chr IV from 1403314-1404165, Verified ORF
YHL033C	9.32	1.00	326	48899.7456	1	YHL033C	RPL8A SGDID:S000001025,Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits, Chr VIII from 36023-35253, reverse complement, Verified ORF
YIL142W	28.682	1.00	42	2047.1269	1	YIL142W	CCT2 SGDID:S000001404,Subunit beta of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo, Chr IX from 83302-84885, Verified ORF
YJR048W	6.85	1.00	3	612.2595	2	YJR048W,YEL039C	CYC1 SGDID:S000003809,Cytochrome c, isoform 1; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration, Chr X from 526250-526579, Verified ORF
YLR052W	11.098	0.99	1	124.7083	1	YLR052W	IES3 SGDID:S000004042,Subunit of the INO80 chromatin remodeling complex, Chr XII from 247202-247954, Verified ORF
YER052C	21.666	1.00	16	1032.3956	1	YER052C	HOM3 SGDID:S000000854,Aspartate kinase (L-aspartate 4-P-transferase); cytoplasmic enzyme that catalyzes the first step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis, Chr V from 257957-256374, reverse complement, Verified ORF
YPR004C	15.179	1.00	9	828.904	1	YPR004C	YPR004C SGDID:S000006208,Electron transfer flavoprotein complex subunit ETF-alpha; contains a FAD binding domain; interacts with YFH1, the yeast frataxin homolog, Chr XVI from 565038-564004, reverse complement, Verified ORF
YPR187W	4.67	1.00	14	4190.9846	1	YPR187W	RPO26 SGDID:S000006391,RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit, Chr XVI from 911253-911272,911349-911796, Verified ORF
YOR230W	14.93	1.00	41	3839.0959	1	YOR230W	WTM1 SGDID:S000005756,Transcriptional repressor involved in regulation of meiosis and silencing; contains WD repeats, Chr XV from 770801-772114, Verified ORF
YOL141W	32.339	0.71	5	153.464	1	YOL141W	PPM2 SGDID:S000005501,Putative carboxyl methyl transferase, has similarity to Ppm1p but biochemical activity not yet demonstrated, Chr XV from 56451-58538, Verified ORF
YBR062C	4.45	0.76	2	477.5166	1	YBR062C	YBR062C SGDID:S000000266,Hypothetical protein, Chr II from 366598-366583,366500-365974, reverse complement, Uncharacterized ORF
YBR169C	38.18	1.00	40	1464.6335	1	YBR169C	SSE2 SGDID:S000000373,Member of the heat shock protein 70 (HSP70) family; may be involved in protein folding; localized to the cytoplasm; highly homologous to the heat shock protein Sse1p, Chr II from 575991-573910, reverse complement, Verified ORF
YMR031C	46.757	1.00	15	448.4866	1	YMR031C	YMR031C SGDID:S000004633,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern, Chr XIII from 334742-332211, reverse complement, Uncharacterized ORF
YMR285C	26.548	0.98	2	103.2117	1	YMR285C	NGL2 SGDID:S000004898,Protein involved in 5.8S rRNA processing; Ccr4p-like RNase required for correct 3'-end formation of 5.8S rRNA at site E; similar to Ngl1p and Ngl3p, Chr XIII from 841690-840143, reverse complement, Verified ORF
YBR279W	25.26	1.00	11	608.7854	1	YBR279W	PAF1 SGDID:S000000483,RNA polymerase II-associated protein, defines a large complex that is biochemically and functionally distinct from the Srb-Mediator form of Pol II holoenzyme and is required for full expression of a subset of cell cycle-regulated genes, Chr II from 761253-762590, Verified ORF
YJL221C	26.51	0.99	4	208.8287	4	YJL221C,YIL172C,YGR287C,YOL157C	FSP2 SGDID:S000003757,Protein of unknown function, expression is induced during nitrogen limitation, Chr X from 18536-16767, reverse complement, Verified ORF
YER096W	21.41	0.94	7	429.6493	1	YER096W	SHC1 SGDID:S000000898,Sporulation-specific activator of Chs3p (chitin synthase III), required for the synthesis of the chitosan layer of ascospores; has similarity to Skt5p, which activates Chs3p during vegetative growth; transcriptionally induced at alkaline pH, Chr V from 351694-353232, Verified ORF
YPL263C	24.27	1.00	4	230.4067	1	YPL263C	KEL3 SGDID:S000006184,Cytoplasmic protein of unknown function, Chr XVI from 46506-44551, reverse complement, Verified ORF
YIL128W	48.61	1.00	12	345.1123	1	YIL128W	MET18 SGDID:S000001390,DNA repair and TFIIH regulator, required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription; involved in telomere maintenance, Chr IX from 113806-116904, Verified ORF
YGR266W	30.2	0.98	4	181.4613	1	YGR266W	YGR266W SGDID:S000003498,Protein of unknown function, predicted to contain a single transmembrane domain; localized to both the mitochondrial outer membrane and the plasma membrane, Chr VII from 1022662-1024767, Verified ORF
YLR443W	10.77	0.97	2	251.8204	1	YLR443W	ECM7 SGDID:S000004435,Non-essential protein of unknown function, Chr XII from 1022622-1023968, Verified ORF
YHR155W	58.36	0.97	15	348.5399	1	YHR155W	YSP1 SGDID:S000001198,Mitochondrial protein with a potential role in promoting mitochondrial fragmentation during programmed cell death in response to high levels of alpha-factor mating pheromone or the drug amiodarone, Chr VIII from 407106-410792, Uncharacterized ORF
YER070W	28.3	1.00	49	2420.5527	1	YER070W	RNR1 SGDID:S000000872,Ribonucleotide-diphosphate reductase (RNR), large subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits, Chr V from 298948-301614, Verified ORF
YNR043W	18.59	1.00	64	4812.8851	1	YNR043W	MVD1 SGDID:S000005326,Mevalonate pyrophosphate decarboxylase, essential enzyme involved in the biosynthesis of isoprenoids and sterols, including ergosterol; acts as a homodimer, Chr XIV from 701897-703087, Verified ORF
YLR083C	18.55	1.00	5	376.8174	1	YLR083C	EMP70 SGDID:S000004073,Protein whose 24kDa cleavage product is found in endosome-enriched membrane fractions, predicted to be a transmembrane protein, Chr XII from 296095-294092, reverse complement, Verified ORF
YKL056C	6.19	1.00	191	43136.7707	1	YKL056C	YKL056C SGDID:S000001539,Protein of unknown function; putative ribosomal protein; homolog of translationally controlled tumor protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YKL056C is not an essential gene, Chr XI from 334559-334056, reverse complement, Verified ORF
YGR082W	7.06	0.99	5	980.179	1	YGR082W	TOM20 SGDID:S000003314,Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially directed proteins; acts as a receptor for incoming precursor proteins, Chr VII from 644048-644599, Verified ORF
YBR014C	10.328	0.94	3	381.7137	1	YBR014C	YBR014C SGDID:S000000218,Hypothetical protein, Chr II from 267336-266725, reverse complement, Uncharacterized ORF
YPL037C	6.49	1.00	210	45235.512	1	YPL037C	EGD1 SGDID:S000005958,Subunit beta1 of the nascent polypeptide-associated complex (NAC) involved in protein targeting, associated with cytoplasmic ribosomes; enhances DNA binding of the Gal4p activator; homolog of human BTF3b, Chr XVI from 481898-481425, reverse complement, Verified ORF
YOL039W	6.66	1.00	168	35264.6814	1	YOL039W	RPP2A SGDID:S000005399,Ribosomal protein P2 alpha, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm, Chr XV from 254296-254616, Verified ORF
YGL068W	8	1.00	22	3844.48	1	YGL068W	MNP1 SGDID:S000003036,Protein associated with the mitochondrial nucleoid; putative mitochondrial ribosomal protein with similarity to E. coli L7\L12 ribosomal protein; required for normal respiratory growth, Chr VII from 375090-375674, Verified ORF
YLR447C	11.31	1.00	18	2224.9221	1	YLR447C	VMA6 SGDID:S000004439,Subunit D of the five-subunit V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found in the endomembrane system; stabilizes VO subunits; required for V1 domain assembly on the vacuolar membrane, Chr XII from 1027890-1026853, reverse complement, Verified ORF
YGL014W	19.45	0.78	2	112.1269	1	YGL014W	PUF4 SGDID:S000002982,Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors, Chr VII from 466146-468812, Verified ORF
YNL209W	20.4	1.00	1401	96009.2065	1	YNL209W	SSB2 SGDID:S000005153,Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, functions with J-protein partner Zuo1p; may be involved in the folding of newly-synthesized polypeptide chains; member of the HSP70 family; homolog of SSB1, Chr XIV from 252060-253901, Verified ORF
YMR113W	14.91	0.91	4	341.2939	1	YMR113W	FOL3 SGDID:S000004719,Dihydrofolate synthetase, involved in folic acid biosynthesis; catalyzes the conversion of dihydropteroate to dihydrofolate in folate coenzyme biosynthesis, Chr XIII from 494998-496281, Verified ORF
YDR037W	27.06	1.00	264	13638.9534	1	YDR037W	KRS1 SGDID:S000002444,Lysyl-tRNA synthetase; also identified as a negative regulator of general control of amino acid biosynthesis , Chr IV from 525437-527212, Verified ORF
YMR217W	22.537	1.00	163	10111.0535	1	YMR217W	GUA1 SGDID:S000004830,GMP synthase, an enzyme that catalyzes the second step in the biosynthesis of GMP from inosine 5'-phosphate (IMP); transcription is not subject to regulation by guanine but is negatively regulated by nutrient starvation, Chr XIII from 701789-703366, Verified ORF
YOR007C	19.7	1.00	79	5606.1637	1	YOR007C	SGT2 SGDID:S000005533,Glutamine-rich cytoplasmic protein of unknown function, contains tetratricopeptide (TPR) repeats, which often mediate protein-protein interactions; conserved in human and C. elegans, Chr XV from 339979-338939, reverse complement, Verified ORF
YPR016C	4.57	1.00	24	7341.7561	1	YPR016C	TIF6 SGDID:S000006220,Constituent of 66S pre-ribosomal particles, has similarity to human translation initiation factor 6 (eIF6); may be involved in the biogenesis and or stability of 60S ribosomal subunits, Chr XVI from 593066-592329, reverse complement, Verified ORF
YMR296C	14.87	1.00	14	1316.2002	1	YMR296C	LCB1 SGDID:S000004911,Component of serine palmitoyltransferase, responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine, Chr XIII from 860890-859214, reverse complement, Verified ORF
YDR182W	10.75	1.00	4	520.1833	1	YDR182W	CDC1 SGDID:S000002590,Putative membrane protein of unknown function involved in Mn2+ homeostasis; mutants display actin and general growth defects, heterogeneous cell cycle arrests, and pleiotropic defects in cell cycle progression and organelle distribution, Chr IV from 827579-829054, Verified ORF
YLR060W	26.22	1.00	180	9597.204	1	YLR060W	FRS1 SGDID:S000004050,Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase, forms a tetramer with Frs2p to generate the active enzyme; evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase based on protein sequence, but substrate binding is similar, Chr XII from 260980-262767, Verified ORF
YNL178W	17.75	1.00	521	41034.04	1	YNL178W	RPS3 SGDID:S000005122,Protein component of the small (40S) ribosomal subunit, has apurinic\apyrimidinic (AP) endonuclease activity; essential for viability; has similarity to E. coli S3 and rat S3 ribosomal proteins, Chr XIV from 302682-303404, Verified ORF
YML074C	10.41	1.00	44	5908.9029	1	YML074C	FPR3 SGDID:S000004539,Nucleolar peptidyl-prolyl cis-trans isomerase (PPIase); FK506 binding protein; phosphorylated by casein kinase II (Cka1p-Cka2p-Ckb1p-Ckb2p) and dephosphorylated by Ptp1p, Chr XIII from 121324-120089, reverse complement, Verified ORF
YDR232W	15.77	0.98	1	86.8758	1	YDR232W	HEM1 SGDID:S000002640,5-aminolevulinate synthase, catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p, Chr IV from 927448-929094, Verified ORF
YDR483W	17.39	1.00	17	1366.6403	1	YDR483W	KRE2 SGDID:S000002891,Alpha1,2-mannosyltransferase of the Golgi involved in protein mannosylation, Chr IV from 1421149-1422477, Verified ORF
YMR019W	27.91	1.00	10	500.8931	1	YMR019W	STB4 SGDID:S000004621,Protein that binds Sin3p in a two-hybrid assay; contains a Zn(II)2Cys6 zinc finger domain characteristic of DNA-binding proteins, Chr XIII from 312155-315004, Verified ORF
YKL007W	12.3	0.97	5	551.241	1	YKL007W	CAP1 SGDID:S000001490,Alpha subunit of the capping protein (CP) heterodimer (Cap1p and Cap2p) which binds to the barbed ends of actin filaments preventing further polymerization; localized predominantly to cortical actin patches, Chr XI from 428945-429751, Verified ORF
YCR026C	22.31	0.88	4	220.5707	1	YCR026C	NPP1 SGDID:S000000621,Nucleotide pyrophosphatase\phosphodiesterase family member; mediates extracellular nucleotide phosphate hydrolysis along with Npp2p and Pho5p; activity and expression enhanced during conditions of phosphate starvation, Chr III from 166335-164107, reverse complement, Verified ORF
YDL213C	9.93	0.94	7	926.3637	1	YDL213C	NOP6 SGDID:S000002372,Protein with similarity to hydrophilins, which are involved in the adaptive response to hyperosmotic conditions; computational analysis of large-scale protein-protein interaction data suggests a possible role in rRNA processing, Chr IV from 77967-77290, reverse complement, Uncharacterized ORF
YLR326W	6	0.74	1	172.4191	1	YLR326W	YLR326W SGDID:S000004318,Hypothetical protein, Chr XII from 782174-782896, Uncharacterized ORF
YMR080C	38.12	1.00	8	293.3877	1	YMR080C	NAM7 SGDID:S000004685,ATP-dependent RNA helicase of the SFI superfamily, required for nonsense mediated mRNA decay and for efficient translation termination at nonsense codons; involved in telomere maintenance, Chr XIII from 429626-426711, reverse complement, Verified ORF
YOR324C	27.1	1.00	5	257.9322	1	YOR324C	FRT1 SGDID:S000005851,Tail-anchored endoplasmic reticulum membrane protein that is a substrate of the phosphatase calcineurin, interacts with homolog Frt2p, promotes cell growth in conditions of high Na+, alkaline pH, and cell wall stress, Chr XV from 925037-923229, reverse complement, Verified ORF
YBL082C	8.638	1.00	8	1294.7374	1	YBL082C	ALG3 SGDID:S000000178,Dolichol-P-Man dependent alpha(1-3) mannosyltransferase, involved in the synthesis of dolichol-linked oligosaccharide donor for N-linked glycosylation of proteins, Chr II from 71124-69748, reverse complement, Verified ORF
YDR032C	7.15	1.00	59	11535.884	1	YDR032C	PST2 SGDID:S000002439,Protein of unknown function with similarity to members of a family of flavodoxin-like proteins; induced by oxidative stress in a Yap1p dependent manner; GFP-fusion protein localizes to the cytoplasm in a punctate pattern, Chr IV from 504692-504096, reverse complement, Verified ORF
YNL134C	14.05	1.00	10	995.0126	1	YNL134C	YNL134C SGDID:S000005078,Uncharacterized ORF, Chr XIV from 373583-372453, reverse complement, Uncharacterized ORF
YJL014W	25.899	1.00	21	1133.5513	1	YJL014W	CCT3 SGDID:S000003551,Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo, Chr X from 407474-409078, Verified ORF
YCR033W	49.09	0.82	6	140.1125	1	YCR033W	SNT1 SGDID:S000000629,Subunit of the Set3C deacetylase complex; putative DNA-binding protein, Chr III from 186485-190165, Verified ORF
YBL047C	45.008	1.00	29	900.7685	1	YBL047C	EDE1 SGDID:S000000143,Key endocytic protein involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins, Chr II from 132043-127898, reverse complement, Verified ORF
YPL012W	46.778	1.00	30	896.5706	1	YPL012W	RRP12 SGDID:S000005933,Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; contains HEAT-repeats, Chr XVI from 529720-533406, Verified ORF
YER045C	10.34	0.68	1	91.9376	1	YER045C	ACA1 SGDID:S000000847,Basic leucine zipper (bZIP) transcription factor of the ATF\CREB family, may regulate transcription of genes involved in utilization of non-optimal carbon sources, Chr V from 241500-240031, reverse complement, Verified ORF
YKR001C	37.25	1.00	73	2739.6904	1	YKR001C	VPS1 SGDID:S000001709,GTPase required for vacuolar protein sorting, functions in actin cytoskeleton organization via its interaction with Sla1p; required for late Golgi-retention of some proteins including Kex2p; involved in regulating peroxisome biogenesis, Chr XI from 442365-440251, reverse complement, Verified ORF
YOR126C	11.79	0.98	1	116.2029	1	YOR126C	IAH1 SGDID:S000005652,Isoamyl acetate-hydrolyzing esterase, required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing, Chr XV from 560678-559962, reverse complement, Verified ORF
YBR154C	7.32	1.00	5	954.913	1	YBR154C	RPB5 SGDID:S000000358,RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects transactivation, Chr II from 549003-548356, reverse complement, Verified ORF
YJL020C	44.278	1.00	19	599.8884	1	YJL020C	BBC1 SGDID:S000003557,Protein possibly involved in assembly of actin patches; interacts with an actin assembly factor Las17p and with the SH3 domains of Type I myosins Myo3p and Myo5p; localized predominantly to cortical actin patches, Chr X from 402327-398854, reverse complement, Verified ORF
YJL047C	37.466	0.90	11	369.405	1	YJL047C	RTT101 SGDID:S000003583,Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex; deletion phenotype suggests a role in anaphase progression; interacts with Mms22p and implicated in Mms22-dependent DNA repair; modified by the ubiquitin-like protein, Rub1p, Chr X from 352025-349497, reverse complement, Verified ORF
YPL105C	29.31	0.98	1	46.7428	1	YPL105C	YPL105C SGDID:S000006026,Hypothetical protein, Chr XVI from 355409-352860, reverse complement, Uncharacterized ORF
YDL167C	22.93	0.99	4	241.4326	1	YDL167C	NRP1 SGDID:S000002326,Protein of unknown function, rich in asparagine residues, Chr IV from 163155-160996, reverse complement, Verified ORF
YEL063C	13.348	0.95	3	298.4926	1	YEL063C	CAN1 SGDID:S000000789,Plasma membrane arginine permease, requires phosphatidyl ethanolamine (PE) for localization, exclusively associated with lipid rafts; mutation confers canavanine resistance, Chr V from 33466-31694, reverse complement, Verified ORF
YLR340W	12.6	1.00	385	42716.4444	1	YLR340W	RPP0 SGDID:S000004332,Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphorylated on serine 302, Chr XII from 805887-806825, Verified ORF
YOR131C	10.217	1.00	4	547.3202	1	YOR131C	YOR131C SGDID:S000005657,Hypothetical protein, Chr XV from 572839-572183, reverse complement, Uncharacterized ORF
YDR345C	11.08	1.00	34	4289.8693	1	YDR345C	HXT3 SGDID:S000002753,Low affinity glucose transporter of the major facilitator superfamily, expression is induced in low or high glucose conditions, Chr IV from 1164654-1162951, reverse complement, Verified ORF
YGL008C	17.56	1.00	450	35825.5539	1	YGL008C	PMA1 SGDID:S000002976,Plasma membrane H+-ATPase, pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; part of the P2 subgroup of cation-transporting ATPases, Chr VII from 482671-479915, reverse complement, Verified ORF
YOR108W	20.09	1.00	38	2644.2868	1	YOR108W	LEU9 SGDID:S000005634,Alpha-isopropylmalate synthase II (2-isopropylmalate synthase), catalyzes the first step in the leucine biosynthesis pathway; the minor isozyme, responsible for the residual alpha-IPMS activity detected in a leu4 null mutant, Chr XV from 523028-524842, Verified ORF
YEL032W	50.449	0.95	1	26.3254	1	YEL032W	MCM3 SGDID:S000000758,Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex, Chr V from 86937-89852, Verified ORF
YLR212C	10.55	0.99	3	393.5581	1	YLR212C	TUB4 SGDID:S000004202,Gamma-tubulin, involved in nucleating microtubules from both the cytoplasmic and nuclear faces of the spindle pole body, Chr XII from 566283-564862, reverse complement, Verified ORF
YBR222C	24.92	0.75	1	42.0744	1	YBR222C	PCS60 SGDID:S000000426,Peroxisomal AMP-binding protein, localizes to both the peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid, similar to E. coli long chain acyl-CoA synthetase, Chr II from 668346-666715, reverse complement, Verified ORF
YDL095W	22.15	1.00	27	1704.0994	1	YDL095W	PMT1 SGDID:S000002253,Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine\threonine residues; acts in a complex with Pmt2p, can instead interact with Pmt3p in some conditions; target for new antifungals, Chr IV from 287059-289512, Verified ORF
YBR015C	29.83	0.98	6	275.5681	1	YBR015C	MNN2 SGDID:S000000219,Alpha-1,2-mannosyltransferase, responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment, Chr II from 269503-267710, reverse complement, Verified ORF
YDR361C	15.428	1.00	11	996.7539	1	YDR361C	BCP1 SGDID:S000002769,Essential protein involved in nuclear export of Mss4p, which is a lipid kinase that generates phosphatidylinositol 4,5-biphosphate and plays a role in actin cytoskeleton organization and vesicular transport, Chr IV from 1196255-1195404, reverse complement, Uncharacterized ORF
YOR323C	23.429	1.00	69	4117.1837	1	YOR323C	PRO2 SGDID:S000005850,Gamma-glutamyl phosphate reductase, catalyzes the second step in proline biosynthesis, Chr XV from 922902-921532, reverse complement, Verified ORF
YMR183C	7.8	0.99	6	1064.6252	1	YMR183C	SSO2 SGDID:S000004795,Plasma membrane t-SNARE involved in fusion of secretory vesicles at the plasma membrane; syntaxin homolog that is functionally redundant with Sso1p, Chr XIII from 627807-626920, reverse complement, Verified ORF
YIL151C	37.756	0.80	2	59.2432	1	YIL151C	YIL151C SGDID:S000001413,Hypothetical protein, Chr IX from 60694-57338, reverse complement, Uncharacterized ORF
YPL009C	41.867	1.00	39	1302.2599	1	YPL009C	YPL009C SGDID:S000005930,Hypothetical protein, Chr XVI from 538933-535817, reverse complement, Uncharacterized ORF
YNL065W	15.67	0.90	5	401.4656	1	YNL065W	AQR1 SGDID:S000005009,Plasma membrane transporter of the major facilitator superfamily that confers resistance to short-chain monocarboxylic acids and quinidine, Chr XIV from 503725-505485, Verified ORF
YLR127C	36.058	0.98	9	341.9572	1	YLR127C	APC2 SGDID:S000004117,Subunit of the Anaphase-Promoting Complex\Cyclosome (APC\C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase\anaphase transition; similar to cullin Cdc53p, Chr XII from 398320-395759, reverse complement, Verified ORF
YPL063W	25.51	1.00	25	1370.0438	1	YPL063W	TIM50 SGDID:S000005984,Constituent of the mitochondrial inner membrane presequence translocase (TIM23 complex); may promote binding of incoming precursor proteins to the intermembrane space domain of Tom22p during translocation, Chr XVI from 429936-431366, Verified ORF
YJL222W	57.49	1.00	7	170.22	2	YJL222W,YIL173W	VTH2 SGDID:S000003758,Putative membrane glycoprotein with strong similarity to Vth1p and Pep1p\Vps10p, may be involved in vacuolar protein sorting, Chr X from 11475-16124, Verified ORF
YHL038C	24.218	0.88	10	507.9831	1	YHL038C	CBP2 SGDID:S000001030,Mitochondrial protein required for splicing of the group I intron aI5 of the COB pre-mRNA, binds to the RNA to promote splicing; also involved in but not essential for splicing of the COB bI2 intron and the intron in the 21S rRNA gene, Chr VIII from 25506-23614, reverse complement, Verified ORF
YDR457W	135.215	0.99	5	51.1782	1	YDR457W	TOM1 SGDID:S000002865,E3 ubiquitin ligase of the hect-domain class; has a role in mRNA export from the nucleus and may regulate transcriptional coactivators, Chr IV from 1369782-1379588, Verified ORF
YFR024C-A	21.07	1.00	9	597.1492	1	YFR024C-A	LSB3 SGDID:S000002968,Protein containing a C-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization, Chr VI from 203421-203375,203256-201948, reverse complement, Verified ORF
YOL111C	12.578	1.00	17	1889.4797	1	YOL111C	MDY2 SGDID:S000005471,Nuclear protein required for efficient mating, involved in shmoo formation and nuclear migration in the pre-zygote, contains a ubiquitin-like (UBL) domain, Chr XV from 108896-108258, reverse complement, Verified ORF
YER009W	3.97	1.00	35	12324.8729	1	YER009W	NTF2 SGDID:S000000811,Nuclear envelope protein, interacts with GDP-bound Gsp1p and with proteins of the nuclear pore to transport Gsp1p into the nucleus where it is an essential player in nucleocytoplasmic transport, Chr V from 172114-172491, Verified ORF
YPR110C	17.34	1.00	23	1854.3156	1	YPR110C	RPC40 SGDID:S000006314,RNA polymerase subunit, common to RNA polymerase I and III, Chr XVI from 746833-745826, reverse complement, Verified ORF
YOR154W	21.99	0.88	3	167.8354	1	YOR154W	YOR154W SGDID:S000005680,Hypothetical protein, Chr XV from 624730-626493, Uncharacterized ORF
YMR219W	66.889	1.00	18	376.2033	1	YMR219W	ESC1 SGDID:S000004832,Protein localized to the nuclear periphery, involved in telomeric silencing; interacts with PAD4-domain of Sir4p, Chr XIII from 707132-712108, Verified ORF
YNL324W	2.77	0.74	1	373.4709	1	YNL324W	YNL324W SGDID:S000005268,Hypothetical protein, Chr XIV from 31049-31444, Dubious ORF
YMR238W	8.579	1.00	2	325.9104	1	YMR238W	DFG5 SGDID:S000004851,Putative mannosidase, essential glycosylphosphatidylinositol (GPI)-anchored membrane protein required for cell wall biogenesis in bud formation, involved in filamentous growth, homologous to Dcw1p, Chr XIII from 746352-747728, Verified ORF
YFL034C-B	12.14	0.86	3	297.1022	1	YFL034C-B	MOB2 SGDID:S000001859,Component of the RAM signaling network, localizes and activates the Ace2p in the daughter cell nucleus to direct daughter cell-specific transcription of several genes involved in cell separation; Mob1p-like protein, Chr VI from 63992-63973,63858-63015, reverse complement, Verified ORF
YNR016C	92.1000000000001	1.00	265	4022.4546	1	YNR016C	ACC1 SGDID:S000005299,Acetyl-CoA carboxylase, biotin containing enzyme that catalyzes the carboxylation of acetyl-CoA to form malonyl-CoA; required for de novo biosynthesis of long-chain fatty acids, Chr XIV from 661376-654675, reverse complement, Verified ORF
YER123W	18.42	0.85	1	64.511	1	YER123W	YCK3 SGDID:S000000925,Palmitoylated, vacuolar membrane-localized casein kinase I isoform; negatively regulates vacuole fusion during hypertonic stress via phosphorylation of the HOPS complex subunit, Vps41p; shares overlapping essential functions with Hrr25p, Chr V from 404809-406383, Verified ORF
YBL032W	14.72	0.98	6	558.4373	1	YBL032W	HEK2 SGDID:S000000128,RNA binding protein with similarity to hnRNP-K that localizes to the cytoplasm and to subtelomeric DNA; required for the proper localization of ASH1 mRNA; involved in the regulation of telomere position effect and telomere length, Chr II from 160187-161332, Verified ORF
YKR054C	184.486	1.00	13	98.511	1	YKR054C	DYN1 SGDID:S000001762,Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p, Chr XI from 547567-535289, reverse complement, Verified ORF
YGL105W	16.837	1.00	62	5147.9211	1	YGL105W	ARC1 SGDID:S000003073,Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases (Mes1p and Gus1p), delivering tRNA to them, stimulating catalysis, and ensuring their localization to the cytoplasm; also binds quadruplex nucleic acids, Chr VII from 307440-308570, Verified ORF
YMR315W	16.85	1.00	21	1742.3054	1	YMR315W	YMR315W SGDID:S000004932,Hypothetical protein, Chr XIII from 902799-903848, Uncharacterized ORF
YDR388W	13.92	1.00	19	1908.1797	1	YDR388W	RVS167 SGDID:S000002796,Actin-associated protein, subunit of a complex (Rvs161p-Rvs167p) involved in regulation of actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; homolog of mammalian amphiphysin, Chr IV from 1250178-1251626, Verified ORF
YAL024C	71.118	0.96	5	94.3553	1	YAL024C	LTE1 SGDID:S000000022,Putative GDP\GTP exchange factor required for mitotic exit at low temperatures; acts as a guanine nucleotide exchange factor (GEF) for Tem1p, which is a key regulator of mitotic exit; physically associates with Ras2p-GTP, Chr I from 105873-101566, reverse complement, Verified ORF
YLR215C	19.03	0.92	2	135.1711	1	YLR215C	CDC123 SGDID:S000004205,Protein involved in nutritional control of the cell cycle; regulates abundance of the translation initiation factor eIF2; ortholog of human D123 protein, Chr XII from 571860-570778, reverse complement, Verified ORF
YGR090W	55.017	1.00	18	457.3835	1	YGR090W	UTP22 SGDID:S000003322,Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data, Chr VII from 662362-666075, Uncharacterized ORF
YOR375C	18.87	1.00	245	18150.9389	1	YOR375C	GDH1 SGDID:S000005902,NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh3p; expression regulated by nitrogen and carbon sources, Chr XV from 1043040-1041676, reverse complement, Verified ORF
YHR066W	13.98	0.99	1	98.9994	1	YHR066W	SSF1 SGDID:S000001108,Constituent of 66S pre-ribosomal particles, required for ribosomal large subunit maturation; functionally redundant with Ssf2p; member of the Brix family, Chr VIII from 229337-230698, Verified ORF
YBL022C	61.736	1.00	10	226.4469	1	YBL022C	PIM1 SGDID:S000000118,Mitochondrial ATP-dependent protease involved in intramitochondrial proteolysis; involved in degradation of misfolded proteins in mitochondria; required for bigenesis and maintenance of mitochondria, Chr II from 181278-177877, reverse complement, Verified ORF
YKL216W	7.78	1.00	42	7547.0044	1	YKL216W	URA1 SGDID:S000001699,Dihydroorotate dehydrogenase, catalyzes the fourth enzymatic step in the de novo biosynthesis of pyrimidines, converting dihydroorotic acid into orotic acid, Chr XI from 25216-26160, Verified ORF
YDR162C	7.31	0.99	6	1135.9886	1	YDR162C	NBP2 SGDID:S000002569,Protein involved in the HOG (high osmolarity glycerol) pathway, negatively regulates Hog1p by recruitment of phosphatase Ptc1p the Pbs2p-Hog1p complex, found in the nucleus and cytoplasm, contains an SH3 domain that binds Pbs2p, Chr IV from 781097-780387, reverse complement, Verified ORF
YHR088W	16.74	1.00	8	668.0968	1	YHR088W	RPF1 SGDID:S000001130,Nucleolar protein involved in the assembly of the large ribosomal subunit; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA, Chr VIII from 281497-282384, Verified ORF
YDL171C	91.265	1.00	104	1593.0668	1	YDL171C	GLT1 SGDID:S000002330,NAD(+)-dependent glutamate synthase (GOGAT), synthesizes glutamate from glutamine and alpha-ketoglutarate; with Gln1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source, Chr IV from 155641-149204, reverse complement, Verified ORF
YPR052C	5.97	1.00	22	5151.7319	1	YPR052C	NHP6A SGDID:S000006256,High-mobility group non-histone chromatin protein, functionally redundant with Nhp6Bp; homologous to mammalian high mobility group proteins 1 and 2; acts to recruit transcription factor Rcs1p to certain promoters, Chr XVI from 665971-665690, reverse complement, Verified ORF
YDR035W	13.65	1.00	8	819.3363	1	YDR035W	ARO3 SGDID:S000002442,3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by phenylalanine, Chr IV from 521813-522925, Verified ORF
YBL063W	43.7	0.81	4	103.6498	1	YBL063W	KIP1 SGDID:S000000159,Kinesin-related motor protein required for mitotic spindle assembly and chromosome segregation; functionally redundant with Cin8p , Chr II from 101888-105223, Verified ORF
YML094W	10.01	1.00	12	1675.9153	1	YML094W	GIM5 SGDID:S000004559,Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it, Chr XIII from 82275-82290,82374-82849, Verified ORF
YMR045C	60.12	0.68	1	15.8122	2	YBL005W-B,YMR045C	YMR045C SGDID:S000004648,TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition, Chr XIII from 362626-361322,361320-357358, reverse complement, transposable_element_gene
YMR049C	34.345	1.00	38	1546.7673	1	YMR049C	ERB1 SGDID:S000004652,Protein required for maturation of the 25S and 5.8S ribosomal RNAs; constituent of 66S pre-ribosomal particles; homologous to mammalian Bop1, Chr XIII from 370516-368093, reverse complement, Verified ORF
YER151C	36.19	1.00	11	424.9218	1	YER151C	UBP3 SGDID:S000000953,Ubiquitin-specific protease that interacts with Bre5p to co-regulate anterograde and retrograde transport between endoplasmic reticulum and Golgi compartments; inhibitor of gene silencing; cleaves ubiquitin fusions but not polyubiquitin, Chr V from 472419-469681, reverse complement, Verified ORF
YCL039W	22.89	0.72	3	131.9206	1	YCL039W	GID7 SGDID:S000000544,Protein of unknown function, involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; contains six WD40 repeats; computational analysis suggests that Gid7p and Moh1p have similar functions, Chr III from 52645-54882, Verified ORF
YHR207C	24.268	0.82	6	283.4236	1	YHR207C	SET5 SGDID:S000001250,Zinc-finger protein of unknown function, contains one canonical and two unusual fingers in unusual arrangements; deletion enhances replication of positive-strand RNA virus, Chr VIII from 516485-514905, reverse complement, Verified ORF
YDR171W	11.6	1.00	3	361.5498	1	YDR171W	HSP42 SGDID:S000002578,Small cytosolic stress-induced chaperone that forms barrel-shaped oligomers and suppresses the aggregation of non-native proteins; oligomer dissociation is not required for function; involved in cytoskeleton reorganization after heat shock, Chr IV from 806618-807745, Verified ORF
YNL126W	32.42	0.80	2	68.994	1	YNL126W	SPC98 SGDID:S000005070,Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque, Chr XIV from 387229-389769, Verified ORF
YPR019W	42.94	0.92	3	89.857	1	YPR019W	CDC54 SGDID:S000006223,Essential helicase component of heterohexameric MCM2-7 complexes which bind pre-replication complexes on DNA and melt the DNA prior to replication; accumulates in the nucleus in G1; homolog of S. pombe Cdc21p, Chr XVI from 596747-599548, Verified ORF
YPR190C	29.64	0.98	1	46.2224	1	YPR190C	RPC82 SGDID:S000006394,RNA polymerase III subunit C82, Chr XVI from 919037-917073, reverse complement, Verified ORF
YNR017W	6.05	0.99	2	457.5248	1	YNR017W	MAS6 SGDID:S000005300,Essential protein of the mitochondrial inner membrane, component of the mitochondrial import system, Chr XIV from 662915-663583, Verified ORF
YOR258W	9.93	0.89	1	125.2984	1	YOR258W	HNT3 SGDID:S000005784,Member of the third branch of the histidine triad (HIT) superfamily of nucleotide-binding proteins; similar to Aprataxin, a Hint related protein that is mutated in individuals with ataxia with oculomotor apraxia, Chr XV from 811671-812324, Verified ORF
YDR353W	11.8	1.00	135	15993.9846	1	YDR353W	TRR1 SGDID:S000002761,Cytoplasmic thioredoxin reductase, key regulatory enzyme that determines the redox state of the thioredoxin system, which acts as a disulfide reductase system and protects cells against both oxidative and reductive stress, Chr IV from 1183292-1184251, Verified ORF
YNL023C	35.5	1.00	8	315.0406	1	YNL023C	FAP1 SGDID:S000004968,Protein that binds to Fpr1p (FKBP12), conferring rapamycin resistance by competing with rapamycin for Fpr1p binding; has similarity to putative transcription factors, including D. melanogaster shuttle craft and human NFX1, Chr XIV from 591161-588264, reverse complement, Verified ORF
YIL015W	11.78	1.00	5	593.3755	1	YIL015W	BAR1 SGDID:S000001277,Aspartyl protease secreted into the periplasmic space of mating type a cells, helps cells find mating partners, cleaves and inactivates alpha factor allowing cells to recover from alpha-factor-induced cell cycle arrest, Chr IX from 322340-324103, Verified ORF
YNL052W	7.82	1.00	4	715.0857	1	YNL052W	COX5A SGDID:S000004997,Subunit Va of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; predominantly expressed during aerobic growth while its isoform Vb (Cox5Bp) is expressed during anaerobic growth, Chr XIV from 531726-532187, Verified ORF
YJL206C	28.8	0.78	3	113.5869	1	YJL206C	YJL206C SGDID:S000003741,Putative protein of unknown function; similar to transcriptional regulators from the Zn[2]-Cys[6] binuclear cluster protein family; mRNA is weakly cell cycle regulated, peaking in S phase; induced rapidly upon MMS treatment, Chr X from 49935-47659, reverse complement, Uncharacterized ORF
YKL192C	5.51	0.99	2	502.3639	1	YKL192C	ACP1 SGDID:S000001675,Mitochondrial matrix acyl carrier protein, involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p, Chr XI from 80542-80165, reverse complement, Verified ORF
YFL018C	27.677	1.00	28	1414.3077	1	YFL018C	LPD1 SGDID:S000001876,Dihydrolipoamide dehydrogenase, the lipoamide dehydrogenase component (E3) of the pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase multi-enzyme complexes, Chr VI from 103121-101622, reverse complement, Verified ORF
YNL050C	9.18	0.77	17	1993.434	1	YNL050C	YNL050C SGDID:S000004995,Hypothetical protein, Chr XIV from 534983-534967,534875-534080, reverse complement, Uncharacterized ORF
YGL055W	18.77	1.00	23	1713.0438	1	YGL055W	OLE1 SGDID:S000003023,Fatty acid desaturase, required for monounsaturated fatty acid synthesis and for normal distribution of mitochondria, Chr VII from 398631-400163, Verified ORF
YHR111W	14	1.00	4	399.4264	1	YHR111W	UBA4 SGDID:S000001153,Protein that activates Urm1p before its conjugation to proteins (urmylation); one target is the thioredoxin peroxidase Ahp1p, suggesting a role of urmylation in the oxidative stress response, Chr VIII from 333075-334397, Verified ORF
YNL096C	11.27	1.00	115	14265.2319	1	YNL096C	RPS7B SGDID:S000005040,Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Ap; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins, Chr XIV from 444317-444174,443828-443400, reverse complement, Verified ORF
YLL034C	36.754	0.99	3	112.9683	1	YLL034C	RIX7 SGDID:S000003957,Putative ATPase of the AAA family, required for export of pre-ribosomal large subunits from the nucleus; distributed between the nucleolus, nucleoplasm, and nuclear periphery depending on growth conditions, Chr XII from 73145-70632, reverse complement, Verified ORF
YHR019C	25.128	1.00	196	10904.4323	1	YHR019C	DED81 SGDID:S000001061,Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA, Chr VIII from 143551-141887, reverse complement, Verified ORF
YHR013C	14.32	1.00	8	781.0015	1	YHR013C	ARD1 SGDID:S000001055,Subunit of the N-terminal acetyltransferase NatA (Nat1p, Ard1p, Nat5p); N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing, Chr VIII from 131440-130724, reverse complement, Verified ORF
YKL214C	11.03	0.99	2	250.9542	1	YKL214C	YRA2 SGDID:S000001697,Member of the REF (RNA and export factor binding proteins) family; when overexpressed, can substitute for the function of Yra1p in export of poly(A)+ mRNA from the nucleus, Chr XI from 31694-31083, reverse complement, Verified ORF
YNL073W	29.92	0.99	24	1110.1706	1	YNL073W	MSK1 SGDID:S000005017,Mitochondrial lysine-tRNA synthetase, required for import of both aminoacylated and deacylated forms of tRNA(Lys) into mitochondria, Chr XIV from 488387-490117, Verified ORF
YPL119C	31.88	0.90	4	157.8661	1	YPL119C	DBP1 SGDID:S000006040,Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs, Chr XVI from 326263-324410, reverse complement, Verified ORF
YLR075W	9.259	1.00	159	24007.0033	1	YLR075W	RPL10 SGDID:S000004065,Protein component of the large (60S) ribosomal subunit, responsible for joining the 40S and 60S subunits; regulates translation initiation; has similarity to rat L10 ribosomal protein and to members of the QM gene family, Chr XII from 282928-283593, Verified ORF
YDL125C	10.448	1.00	40	5352.1926	1	YDL125C	HNT1 SGDID:S000002283,Adenosine 5'-monophosphoramidase; interacts physically and genetically with Kin28p, a CDK and TFIIK subunit, and genetically with CAK1; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins and similar to Hint, Chr IV from 239606-239510,239398-239019, reverse complement, Verified ORF
YHR186C	62.5	1.00	18	402.6219	1	YHR186C	KOG1 SGDID:S000001229,Subunit of TORC1, a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors, Chr VIII from 480672-475999, reverse complement, Verified ORF
YDR339C	5.25	0.75	3	599.1397	1	YDR339C	YDR339C SGDID:S000002747,Nucleolar protein involved in pre-mRNA processing, Chr IV from 1150514-1149945, reverse complement, Uncharacterized ORF
YNL144C	18.58	0.69	2	103.8336	1	YNL144C	YNL144C SGDID:S000005088,Hypothetical protein, Chr XIV from 355044-352822, reverse complement, Uncharacterized ORF
YLR435W	6.3	0.90	1	199.7132	1	YLR435W	TSR2 SGDID:S000004427,Protein with a potential role in pre-rRNA processing, Chr XII from 1006375-1006992, Verified ORF
YKL033W-A	10.69	1.00	7	915.4302	1	YKL033W-A	YKL033W-A SGDID:S000007242,Putative protein of unknown function; similar to uncharacterized proteins from other fungi, Chr XI from 374148-374858, Uncharacterized ORF
YJR092W	62.906	1.00	18	400.0233	1	YJR092W	BUD4 SGDID:S000003852,Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding; potential Cdc28p substrate, Chr X from 598650-602996, Verified ORF
YJL026W	17.079	1.00	39	3192.3248	1	YJL026W	RNR2 SGDID:S000003563,Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits, Chr X from 392321-393520, Verified ORF
YFR031C-A	8.06	1.00	133	23068.6145	2	YFR031C-A,YIL018W	RPL2A SGDID:S000002104,Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins, Chr VI from 221406-221403,221255-220495, reverse complement, Verified ORF
YDR012W	10.56	1.00	513	67913.8513	1	YDR012W	RPL4B SGDID:S000002419,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins, Chr IV from 471850-472938, Verified ORF
YJR063W	3.35	1.00	15	6259.6689	1	YJR063W	RPA12 SGDID:S000003824,RNA polymerase I subunit A12.2; contains two zinc binding domains, and the N terminal domain is responsible for anchoring to the RNA pol I complex, Chr X from 555110-555487, Verified ORF
YOR278W	13.44	0.76	1	79.0531	1	YOR278W	HEM4 SGDID:S000005804,Uroporphyrinogen III synthase, catalyzes the conversion of hydroxymethylbilane to uroporphyrinogen III, the fourth step in the heme biosynthetic pathway, Chr XV from 842816-843643, Verified ORF
YGR208W	13.86	0.98	4	395.3918	1	YGR208W	SER2 SGDID:S000003440,Phosphoserine phosphatase of the phosphoglycerate pathway, involved in serine and glycine biosynthesis, expression is regulated by the available nitrogen source, Chr VII from 911888-912817, Verified ORF
YLR078C	11.525	0.96	3	349.3465	1	YLR078C	BOS1 SGDID:S000004068,v-SNARE (vesicle specific SNAP receptor), localized to the endoplasmic reticulum membrane and necessary for vesicular transport from the ER to the Golgi, Chr XII from 286560-286558,286468-285737, reverse complement, Verified ORF
YIR003W	36.36	0.81	4	124.5736	1	YIR003W	YIR003W SGDID:S000001442,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein colocalizes with Sac1p to the actin cytoskeleton; interacts with the SH3 domain of the actin binding protein Abp1p; YIR003W is a non-essential gene, Chr IX from 360882-362921, Uncharacterized ORF
YDR201W	11.11	0.93	2	234.0473	1	YDR201W	SPC19 SGDID:S000002609,Essential subunit of the DASH microtubule ring complex, couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; also localized to nuclear side of spindle pole body, Chr IV from 856314-856811, Verified ORF
YIL053W	17.837	1.00	269	21083.1442	1	YIL053W	RHR2 SGDID:S000001315,Constitutively expressed isoform of DL-glycerol-3-phosphatase; involved in glycerol biosynthesis, induced in response to both anaerobic and, along with the Hor2p\Gpp2p isoform, osmotic stress, Chr IX from 255113-255865, Verified ORF
YPL028W	18.59	1.00	137	10302.5822	1	YPL028W	ERG10 SGDID:S000005949,Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase), cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis, Chr XVI from 498094-499290, Verified ORF
YLR214W	25.15	0.95	1	52.8068	1	YLR214W	FRE1 SGDID:S000004204,Ferric reductase and cupric reductase, reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low copper and iron levels, Chr XII from 568569-570629, Verified ORF
YDR258C	42	1.00	6	199.7132	1	YDR258C	HSP78 SGDID:S000002666,Oligomeric mitochondrial matrix chaperone that cooperates with Ssc1p in mitochondrial thermotolerance after heat shock; prevents the aggregation of misfolded matrix proteins; component of the mitochondrial proteolysis system, Chr IV from 974239-971804, reverse complement, Verified ORF
YLR027C	18.45	1.00	91	6895.2486	1	YLR027C	AAT2 SGDID:S000004017,Cytosolic aspartate aminotransferase, involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells, Chr XII from 198086-196830, reverse complement, Verified ORF
YBR198C	36.263	1.00	9	346.9634	1	YBR198C	TAF5 SGDID:S000000402,Subunit (90 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, Chr II from 618518-616122, reverse complement, Verified ORF
YOR275C	30.91	0.83	3	112.6173	1	YOR275C	RIM20 SGDID:S000005801,Protein involved in proteolytic activation of Rim101p in response to alkaline pH; member of the PalA\AIP1\Alix family; interacts with the ESCRT-III subunits Snf7p, suggesting a relationship between the response to pH and multivesicular body formation, Chr XV from 841068-839083, reverse complement, Verified ORF
YGL245W	34.628	1.00	221	8922.1552	1	YGL245W	GUS1 SGDID:S000003214,Glutamyl-tRNA synthetase (GluRS), forms a complex with methionyl-tRNA synthetase (Mes1p) and Arc1p; complex formation increases the catalytic efficiency of both tRNA synthetases and ensures their correct localization to the cytoplasm, Chr VII from 39023-41149, Verified ORF
YNL243W	33.66	1.00	13	539.9258	1	YNL243W	SLA2 SGDID:S000005187,Transmembrane actin-binding protein involved in membrane cytoskeleton assembly and cell polarization; adaptor protein that links actin to clathrin and endocytosis; present in the actin cortical patch of the emerging bud tip; dimer in vivo, Chr XIV from 188052-190958, Verified ORF
YPL209C	14	0.69	2	137.8021	1	YPL209C	IPL1 SGDID:S000006130,Aurora kinase involved in regulating kinetochore-microtubule attachments, associates with Sli15p, which stimulates Ipl1p kinase activity and promotes its association with the mitotic spindle, potential Cdc28p substrate, Chr XVI from 157592-156489, reverse complement, Verified ORF
YPR181C	25.76	1.00	67	3636.0835	1	YPR181C	SEC23 SGDID:S000006385,GTPase-activating protein; component of the Sec23p-Sec24p heterodimeric complex of the COPII vesicle coat, involved in ER to Golgi transport and autophagy; stimulates the GDP-bound form of Sar1p, Chr XVI from 899663-897357, reverse complement, Verified ORF
YCR084C	28.45	1.00	23	1130.1874	1	YCR084C	TUP1 SGDID:S000000680,General repressor of transcription, forms complex with Cyc8p, involved in the establishment of repressive chromatin structure through interactions with histones H3 and H4, appears to enhance expression of some genes, Chr III from 262449-260308, reverse complement, Verified ORF
YKR060W	16.237	0.75	1	64.5744	1	YKR060W	UTP30 SGDID:S000001768,Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data, Chr XI from 556160-556984, Uncharacterized ORF
YKL210W	43.316	1.00	188	6067.5647	1	YKL210W	UBA1 SGDID:S000001693,Ubiquitin activating enzyme, involved in ubiquitin-mediated protein degradation and essential for viability, Chr XI from 39164-42238, Verified ORF
YDR508C	18.689	1.00	8	598.4237	1	YDR508C	GNP1 SGDID:S000002916,High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is fully dependent on Grr1p and modulated by the Ssy1p-Ptr3p-Ssy5p (SPS) sensor of extracellular amino acids, Chr IV from 1468436-1466445, reverse complement, Verified ORF
YBR106W	8.83	1.00	66	10449.3227	1	YBR106W	PHO88 SGDID:S000000310,Probable membrane protein, involved in phosphate transport; pho88 pho86 double null mutant exhibits enhanced synthesis of repressible acid phosphatase at high inorganic phosphate concentrations, Chr II from 452652-453218, Verified ORF
YHR018C	21.32	1.00	18	1180.294	1	YHR018C	ARG4 SGDID:S000001060,Argininosuccinate lyase, catalyzes the final step in the arginine biosynthesis pathway, Chr VIII from 141395-140004, reverse complement, Verified ORF
YLR318W	38.71	0.83	28	839.3012	1	YLR318W	EST2 SGDID:S000004310,Reverse transcriptase subunit of the telomerase holoenzyme, essential for telomerase core catalytic activity, involved in other aspects of telomerase assembly and function; mutations in human homolog are associated with aplastic anemia, Chr XII from 766542-769196, Verified ORF
YBR179C	33.906	1.00	9	371.0828	1	YBR179C	FZO1 SGDID:S000000383,Mitochondrial integral membrane protein involved in mitochondrial fusion and maintenance of the mitochondrial genome; contains N-terminal GTPase domain, Chr II from 589109-586542, reverse complement, Verified ORF
YFL009W	31.46	0.96	7	298.6176	1	YFL009W	CDC4 SGDID:S000001885,F-box protein required for G1\S and G2\M transition, associates with Skp1p and Cdc53p to form a complex, SCFCdc4, which acts as ubiquitin-protein ligase directing ubiquitination of the phosphorylated CDK inhibitor Sic1p, Chr VI from 116139-118478, Verified ORF
YKL195W	22.15	1.00	18	1136.0663	1	YKL195W	MIA40 SGDID:S000001678,Essential protein of the mitochondrial intermembrane space, involved in import and assembly of intermembrane space proteins, Chr XI from 75826-77037, Verified ORF
YMR039C	16.56	1.00	15	1266.2977	1	YMR039C	SUB1 SGDID:S000004642,Transcriptional coactivator, facilitates elongation by influencing enzymes that modify RNAP II, acts in a peroxide resistance pathway involving Rad2p; suppressor of TFIIB mutations, Chr XIII from 349521-348643, reverse complement, Verified ORF
YPL188W	9.13	0.97	3	445.5814	1	YPL188W	POS5 SGDID:S000006109,Mitochondrial NADH kinase, phosphorylates NADH; also phosphorylates NAD(+) with lower specificity; required for the response to oxidative stress, Chr XVI from 191405-192649, Verified ORF
YGL147C	8.47	1.00	201	33175.5063	1	YGL147C	RPL9A SGDID:S000003115,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Bp and has similarity to E. coli L6 and rat L9 ribosomal proteins, Chr VII from 228334-227759, reverse complement, Verified ORF
YLR257W	15.16	0.99	3	273.8811	1	YLR257W	YLR257W SGDID:S000004247,Hypothetical protein, Chr XII from 658828-659793, Uncharacterized ORF
YPL078C	11.749	1.00	16	1903.8116	1	YPL078C	ATP4 SGDID:S000005999,Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis, Chr XVI from 408741-408007, reverse complement, Verified ORF
YJR126C	33.808	0.97	5	200.552	1	YJR126C	VPS70 SGDID:S000003887,Protein of unknown function involved in vacuolar protein sorting, Chr X from 658605-656170, reverse complement, Verified ORF
YIL074C	20.04	1.00	16	1116.1618	1	YIL074C	SER33 SGDID:S000001336,3-phosphoglycerate dehydrogenase, catalyzes the first step in serine and glycine biosynthesis; isozyme of Ser3p, Chr IX from 222487-221078, reverse complement, Verified ORF
YGR031W	15.19	0.66	1	60.7422	1	YGR031W	YGR031W SGDID:S000003263,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion, Chr VII from 546445-547473, Uncharacterized ORF
YDL145C	48.8	1.00	128	3666.8661	1	YDL145C	COP1 SGDID:S000002304,Alpha subunit of COPI vesicle coatomer complex, which surrounds transport vesicles in the early secretory pathway, Chr IV from 198177-194572, reverse complement, Verified ORF
YOR033C	27.731	0.98	12	592.8525	1	YOR033C	EXO1 SGDID:S000005559,5'-3' exonuclease and flap-endonuclease involved in recombination, double-strand break repair and DNA mismatch repair; member of the Rad2p nuclease family, with conserved N and I nuclease domains, Chr XV from 394524-392416, reverse complement, Verified ORF
YJL041W	24.66	1.00	20	1133.814	1	YJL041W	NSP1 SGDID:S000003577,Essential component of the nuclear pore complex, which mediates nuclear import and export, Chr X from 365701-365701,365820-368290, Verified ORF
YPR088C	24.82	1.00	9	506.9272	1	YPR088C	SRP54 SGDID:S000006292,Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence-binding activity of SRP, interacts with the SRP RNA, and mediates binding of SRP to signal receptor; contains GTPase domain, Chr XVI from 713026-711401, reverse complement, Verified ORF
YHR073W	45.54	0.86	6	158.4023	1	YHR073W	OSH3 SGDID:S000001115,Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability, Chr VIII from 242584-245574, Verified ORF
YPR063C	3.13	0.98	3	1313.1305	1	YPR063C	YPR063C SGDID:S000006267,Hypothetical protein, Chr XVI from 678317-678277,678190-677809, reverse complement, Uncharacterized ORF
YGR200C	34.26	1.00	6	244.8323	1	YGR200C	ELP2 SGDID:S000003432,Elongator protein, part of the six-subunit RNA polymerase II Elongator histone acetyltransferase complex; target of Kluyveromyces lactis zymocin, Chr VII from 902275-899909, reverse complement, Verified ORF
YOL007C	6.56	0.78	2	332.4494	1	YOL007C	YOL007C SGDID:S000005367,Appears to be a structural component of the chitin synthase 3 complex, Chr XV from 312368-311343, reverse complement, Uncharacterized ORF
YDR399W	10.26	1.00	42	5722.7772	1	YDR399W	HPT1 SGDID:S000002807,Dimeric hypoxanthine-guanine phosphoribosyltransferase, catalyzes the formation of both inosine monophosphate and guanosine monophosphate; mutations in the human homolog HPRT1 can cause Lesch-Nyhan syndrome and Kelley-Seegmiller syndrome, Chr IV from 1270060-1270725, Verified ORF
YOR197W	10.2	1.00	14	1918.8135	1	YOR197W	MCA1 SGDID:S000005723,Putative cysteine protease similar to mammalian caspases, involved in regulation of apoptosis upon hydrogen peroxide treatment, Chr XV from 717024-718385, Verified ORF
YDL185W	47.97	1.00	276	8043.4853	1	YDL185W	TFP1 SGDID:S000002344,Vacuolar ATPase V1 domain subunit A containing the catalytic nucleotide binding sites; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease, Chr IV from 126788-130003, Verified ORF
YER107C	9.55	0.99	5	724.614	1	YER107C	GLE2 SGDID:S000000909,Component of the nuclear pore complex required for polyadenylated RNA export but not for protein import, homologous to S. pombe Rae1p, Chr V from 374541-373444, reverse complement, Verified ORF
YKL024C	11.54	1.00	7	848.0025	1	YKL024C	URA6 SGDID:S000001507,Uridylate kinase, catalyzes the seventh enzymatic step in the de novo biosynthesis of pyrimidines, converting uridine monophosphate (UMP) into uridine-5'-diphosphate (UDP), Chr XI from 392783-392169, reverse complement, Verified ORF
YKL181W	14.65	0.94	3	269.1016	1	YKL181W	PRS1 SGDID:S000001664,5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes, Chr XI from 107321-108604, Verified ORF
YGL038C	17.35	0.66	1	53.1801	1	YGL038C	OCH1 SGDID:S000003006,Mannosyltransferase of the cis-Golgi apparatus, initiates the polymannose outer chain elongation of N-linked oligosaccharides of glycoproteins, Chr VII from 426810-425368, reverse complement, Verified ORF
YMR075W	38.34	0.94	7	239.9267	1	YMR075W	YMR075W SGDID:S000004680,Nuclear protein of unknown function, Chr XIII from 413981-416035, Uncharacterized ORF
YMR012W	55.229	1.00	89	2252.8264	1	YMR012W	CLU1 SGDID:S000004614,eIF3 component of unknown function; deletion causes defects in mitochondrial organization but not in growth or translation initiation, can rescue cytokinesis and mitochondrial organization defects of the Dictyostelium cluA- mutant, Chr XIII from 291133-294966, Verified ORF
YDR049W	29.24	0.91	1	43.5079	1	YDR049W	YDR049W SGDID:S000002456,Hypothetical protein, Chr IV from 553252-555150, Uncharacterized ORF
YGR192C	15.07	1.00	1229	114010.1568	1	YGR192C	TDH3 SGDID:S000003424,Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall , Chr VII from 883815-882817, reverse complement, Verified ORF
YDL078C	19.29	1.00	33	2391.5894	1	YDL078C	MDH3 SGDID:S000002236,Cytoplasmic malate dehydrogenase, catalyzes interconversion of malate and oxaloacetate; involved in the glyoxylate cycle, Chr IV from 316388-315357, reverse complement, Verified ORF
YHR200W	8.01	1.00	5	872.6546	1	YHR200W	RPN10 SGDID:S000001243,Non-ATPase base subunit of the 19S regulatory particle (RP) of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the RP; binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein, Chr VIII from 499079-499885, Verified ORF
YMR226C	13.02	1.00	40	4294.9085	1	YMR226C	YMR226C SGDID:S000004839,NADP(+)-dependent dehydrogenase; acts on serine, L-allo-threonine, and other 3-hydroxy acids, Chr XIII from 722395-721592, reverse complement, Uncharacterized ORF
YOL041C	25.23	1.00	20	1108.1987	1	YOL041C	NOP12 SGDID:S000005401,Nucleolar protein, required for pre-25S rRNA processing; contains an RNA recognition motif (RRM) and has similarity to Nop13p, Nsr1p, and putative orthologs in Drosophila and S. pombe, Chr XV from 252645-251266, reverse complement, Verified ORF
YJL043W	8.5	0.90	1	148.0227	1	YJL043W	YJL043W SGDID:S000003579,Putative protein of unknown function; YJL043W is a non-essential gene, Chr X from 360047-360820, Uncharacterized ORF
YJL052W	16.249	1.00	232	19960.2629	1	YJL052W	TDH1 SGDID:S000003588,Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall , Chr X from 338188-339186, Verified ORF
YHR023W	104.625	0.80	4	42.7582	1	YHR023W	MYO1 SGDID:S000001065,Type II myosin heavy chain, required for wild-type cytokinesis and cell separation; localizes to the actomyosin ring; binds to myosin light chains Mlc1p and Mlc2p through its IQ1 and IQ2 motifs respectively, Chr VIII from 151659-157445, Verified ORF
YHR079C	50.54	1.00	11	304.2722	1	YHR079C	IRE1 SGDID:S000001121,Serine-threonine kinase and endoribonuclease; transmembrane protein that initiates the unfolded protein response signal by regulating synthesis of Hac1p through HAC1 mRNA splicing, Chr VIII from 261593-258246, reverse complement, Verified ORF
YLR006C	24.86	1.00	14	787.2847	1	YLR006C	SSK1 SGDID:S000003996,Cytoplasmic response regulator, part of a two-component signal transducer that mediates osmosensing via a phosphorelay mechanism; dephosphorylated form is degraded by the ubiquitin-proteasome system; potential Cdc28p substrate, Chr XII from 163892-161754, reverse complement, Verified ORF
YKL008C	11.8	0.78	3	277.229	1	YKL008C	LAC1 SGDID:S000001491,Ceramide synthase component, involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lag1p, Chr XI from 428194-426938, reverse complement, Verified ORF
YEL030W	31.07	1.00	64	2879.676	1	YEL030W	ECM10 SGDID:S000000756,Heat shock protein of the Hsp70 family, localized in mitochondrial nucleoids, plays a role in protein translocation, interacts with Mge1p in an ATP-dependent manner; overexpression induces extensive mitochondrial DNA aggregations, Chr V from 94644-96578, Verified ORF
YIR034C	14.12	1.00	11	1089.0878	1	YIR034C	LYS1 SGDID:S000001473,Saccharopine dehydrogenase (NAD+, L-lysine-forming), catalyzes the conversion of saccharopine to L-lysine, which is the final step in the lysine biosynthesis pathway, Chr IX from 420733-419612, reverse complement, Verified ORF
YMR291W	20.08	1.00	15	1044.3172	1	YMR291W	YMR291W SGDID:S000004905,Hypothetical protein, Chr XIII from 852629-854389, Uncharacterized ORF
YPL048W	17.53	1.00	108	8612.8473	1	YPL048W	CAM1 SGDID:S000005969,Translational cofactor elongation factor-1 gamma, participates in the regulation of GTP-binding protein EF-1 alpha, may play a redundant role in the regulation of protein synthesis or another GTP-dependent process, Chr XVI from 464398-465645, Verified ORF
YLR451W	31.907	0.97	4	170.0006	1	YLR451W	LEU3 SGDID:S000004443,Zinc-finger transcription factor that regulates genes involved in branched chain amino acid biosynthesis and ammonia assimilation; positively regulated by alpha-isopropylmalate, an intermediate in leucine biosynthesis, Chr XII from 1036090-1038750, Verified ORF
YLR178C	8.31	1.00	4	672.9206	1	YLR178C	TFS1 SGDID:S000004168,Carboxypeptidase Y inhibitor, function requires acetylation by the NatB N-terminal acetyltransferase; phosphatidylethanolamine-binding protein involved in protein kinase A signaling pathway, Chr XII from 513823-513164, reverse complement, Verified ORF
YML063W	13.8	1.00	424	42952.82	1	YML063W	RPS1B SGDID:S000004528,Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Ap and has similarity to rat S3a ribosomal protein, Chr XIII from 146482-147249, Verified ORF
YEL046C	14.908	1.00	58	5438.9306	1	YEL046C	GLY1 SGDID:S000000772,Threonine aldolase, catalyzes the cleavage of L-allo-threonine and L-threonine to glycine; involved in glycine biosynthesis, Chr V from 68792-67629, reverse complement, Verified ORF
YGL120C	29.25	1.00	48	2294.1419	1	YGL120C	PRP43 SGDID:S000003088,RNA helicase in the DEAH-box family, involved in release of the lariat-intron from the spliceosome, Chr VII from 283943-281640, reverse complement, Verified ORF
YGR136W	6.28	1.00	13	2893.9339	1	YGR136W	LSB1 SGDID:S000003368,Protein containing an N-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization, Chr VII from 762433-763158, Verified ORF
YMR242C	8.86	1.00	158	24930.3443	2	YOR312C,YMR242C	RPL20A SGDID:S000004855,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Bp and has similarity to rat L18a ribosomal protein, Chr XIII from 754196-754178,753741-753224, reverse complement, Verified ORF
YDR372C	15.729	0.99	2	175.9823	1	YDR372C	VPS74 SGDID:S000002780,Non-essential protein of unknown function involved in vacuolar protein sorting; belongs to a family of cytosolic Golgi-associated proteins suggesting that it may play a role in secretion; also detected in the nucleus, Chr IV from 1222141-1221104, reverse complement, Verified ORF
YOR184W	19.898	1.00	79	5550.3782	1	YOR184W	SER1 SGDID:S000005710,3-phosphoserine aminotransferase, catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p, Chr XV from 679358-680545, Verified ORF
YER136W	19.977	1.00	37	2589.2642	1	YER136W	GDI1 SGDID:S000000938,GDP dissociation inhibitor, regulates vesicle traffic in secretory pathways by regulating the dissociation of GDP from the Sec4\Ypt\rab family of GTP binding proteins, Chr V from 439612-440967, Verified ORF
YGL116W	23.01	0.80	10	486.047	1	YGL116W	CDC20 SGDID:S000003084,Cell-cycle regulated activator of anaphase-promoting complex\cyclosome (APC\C), which is required for metaphase\anaphase transition; directs ubiquitination of mitotic cyclins, Pds1p, and other anaphase inhibitors; potential Cdc28p substrate, Chr VII from 289812-291644, Verified ORF
YMR203W	10.52	1.00	39	5182.6726	1	YMR203W	TOM40 SGDID:S000004816,Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially directed proteins; constitutes the core element of the protein conducting pore, Chr XIII from 668491-669654, Verified ORF
YLR197W	22.68	1.00	220	13560.776	1	YLR197W	SIK1 SGDID:S000004187,Essential evolutionarily-conserved nucleolar protein component of the box C\D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects, Chr XII from 546099-547613, Verified ORF
YMR145C	27.3	1.00	8	409.6681	1	YMR145C	NDE1 SGDID:S000004753,Mitochondrial external NADH dehydrogenase, catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p are involved in providing the cytosolic NADH to the mitochondrial respiratory chain, Chr XIII from 556474-554792, reverse complement, Verified ORF
YLL031C	19.108	0.89	2	130.2295	1	YLL031C	GPI13 SGDID:S000003954,ER membrane localized phosphoryltransferase that adds phosphoethanolamine onto the third mannose residue of the glycosylphosphatidylinositol (GPI) anchor precursor; similar to human PIG-O protein, Chr XII from 80204-77151, reverse complement, Verified ORF
YDR300C	22.368	1.00	14	874.9954	1	YDR300C	PRO1 SGDID:S000002708,Gamma-glutamyl kinase, catalyzes the first step in proline biosynthesis, Chr IV from 1062787-1061501, reverse complement, Verified ORF
YIR008C	20.32	0.99	1	68.1108	1	YIR008C	PRI1 SGDID:S000001447,Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair, Chr IX from 374303-373074, reverse complement, Verified ORF
YJR047C	9.217	0.95	3	432.275	1	YJR047C	ANB1 SGDID:S000003808,Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Hyp2p; undergoes an essential hypusination modification; expressed under anaerobic conditions, Chr X from 525296-524823, reverse complement, Verified ORF
YLR229C	4.467	0.98	2	613.4017	1	YLR229C	CDC42 SGDID:S000004219,Small rho-like GTPase, essential for establishment and maintenance of cell polarity; mutants have defects in the organization of actin and septins, Chr XII from 604789-604214, reverse complement, Verified ORF
YBL024W	37.15	1.00	26	978.4067	1	YBL024W	NCL1 SGDID:S000000120,S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; similar to Nop2p and human proliferation associated nucleolar protein p120, Chr II from 172537-174591, Verified ORF
YLR406C	6.13	1.00	108	24630.2144	2	YLR406C,YDL075W	RPL31B SGDID:S000004398,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Ap and has similarity to rat L31 ribosomal protein; associates with the karyopherin Sxm1p, Chr XII from 931754-931698,931348-931064, reverse complement, Verified ORF
YJL082W	37.19	0.85	4	127.8078	1	YJL082W	IML2 SGDID:S000003618,Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus, Chr X from 281102-283297, Verified ORF
YLR392C	24.33	1.00	16	919.354	1	YLR392C	YLR392C SGDID:S000004384,Hypothetical protein, Chr XII from 906305-904749, reverse complement, Uncharacterized ORF
YGR075C	10.28	0.67	1	91.1143	1	YGR075C	PRP38 SGDID:S000003307,Unique component of the U4\U6.U5 tri-snRNP particle, dispensable for spliceosome assembly, but required for conformational changes which lead to catalytic activation of the spliceosome, Chr VII from 636879-636151, reverse complement, Verified ORF
YLR351C	15.246	1.00	6	550.1742	1	YLR351C	NIT3 SGDID:S000004343,Nit protein, one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member, Chr XII from 830363-829488, reverse complement, Verified ORF
YOR340C	13.55	1.00	13	1341.2476	1	YOR340C	RPA43 SGDID:S000005867,RNA polymerase I subunit A43, Chr XV from 960179-959199, reverse complement, Verified ORF
YDL198C	17.02	1.00	8	657.1058	1	YDL198C	GGC1 SGDID:S000002357,Mitochondrial GTP\GDP transporter, essential for mitochondrial genome maintenance; has a role in mitochondrial iron transport; member of the mitochondrial carrier family; (putative) mitochondrial carrier protein, Chr IV from 104552-103650, reverse complement, Verified ORF
YAL026C	48.158	0.99	1	28.739	1	YAL026C	DRS2 SGDID:S000000024,Integral membrane Ca(2+)-ATPase involved in aminophospholipid translocation; required to form a specific class of secretory vesicles that accumulate upon actin cytoskeleton disruption; mutation affects maturation of the 18S rRNA, Chr I from 99698-95631, reverse complement, Verified ORF
YLR001C	17.619	0.66	2	104.7363	1	YLR001C	YLR001C SGDID:S000003991,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the vacuolar membrane; also found in mitochondria; YLR001C is not an essential gene, Chr XII from 153976-151388, reverse complement, Uncharacterized ORF
YDR316W	22.827	0.75	23	1056.4408	1	YDR316W	OMS1 SGDID:S000002724,Protein integral to the mitochondrial membrane; has a conserved methyltransferase motif; multicopy suppressor of respiratory defects caused by OXA1 mutations, Chr IV from 1093760-1095175, Verified ORF
YAL003W	7.84	1.00	334	59557.3432	1	YAL003W	EFB1 SGDID:S000000003,Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site, Chr I from 142176-142255,142622-143162, Verified ORF
YBL008W	36.717	0.99	10	376.9406	1	YBL008W	HIR1 SGDID:S000000104,Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3 and H4 genes; contributes to nucleosome formation, heterochromatic gene silencing, and formation of functional kinetochores, Chr II from 209656-212178, Verified ORF
YPR033C	28.76	1.00	85	4131.7587	1	YPR033C	HTS1 SGDID:S000006237,Cytoplasmic and mitochondrial histidine tRNA synthetase; encoded by a single nuclear gene that specifies two messages; efficient mitochondrial localization requires both a presequence and an amino-terminal sequence , Chr XVI from 639016-637376, reverse complement, Verified ORF
YML130C	26.12	0.99	5	264.9335	1	YML130C	ERO1 SGDID:S000004599,Glycoprotein required for oxidative protein folding in the endoplasmic reticulum, Chr XIII from 13175-11484, reverse complement, Verified ORF
YPL049C	14.04	0.99	6	591.4584	1	YPL049C	DIG1 SGDID:S000005970,Regulatory protein of unknown function, constitutively-expressed, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription, Chr XVI from 463836-462478, reverse complement, Verified ORF
YJL117W	12.2	1.00	21	2406.3809	1	YJL117W	PHO86 SGDID:S000003653,Endoplasmic reticulum (ER) resident protein required for ER exit of the high-affinity phosphate transporter Pho84p, specifically required for packaging of Pho84p into COPII vesicles, Chr X from 192452-193387, Verified ORF
YMR162C	59.356	1.00	21	494.6062	1	YMR162C	DNF3 SGDID:S000004772,Non-essential P-type ATPase involved in aminophospholipid translocation, localizes to the trans-Golgi, likely involved in protein transport, Chr XIII from 583920-578950, reverse complement, Verified ORF
YHR068W	17.38	1.00	45	3619.6589	1	YHR068W	DYS1 SGDID:S000001110,Deoxyhypusine synthase, catalyzes formation of deoxyhypusine, the first step in hypusine biosynthesis; triggers posttranslational hypusination of translation elongation factor eIF-5A and regulates its intracellular levels; tetrameric, Chr VIII from 232135-233298, Verified ORF
YDR019C	14.31	1.00	5	488.467	1	YDR019C	GCV1 SGDID:S000002426,T subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm, Chr IV from 485362-484160, reverse complement, Verified ORF
YNL084C	18.74	0.99	4	295.4136	1	YNL084C	END3 SGDID:S000005028,EH domain-containing protein involved in endocytosis, actin cytoskeletal organization and cell wall morphogenesis; forms a complex with Sla1p and Pan1p, Chr XIV from 471104-470055, reverse complement, Verified ORF
YDR430C	56.25	0.89	3	66.358	1	YDR430C	CYM1 SGDID:S000002838,Lysine-specific metalloprotease of the mitochondrial intermembrane space, member of the pitrilysin family; degrades proteins and presequence peptides cleaved from imported proteins; required for normal mitochondrial morphology, Chr IV from 1328462-1325493, reverse complement, Verified ORF
YDR050C	15.44	1.00	345	31237.5318	1	YDR050C	TPI1 SGDID:S000002457,Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region, Chr IV from 556470-555724, reverse complement, Verified ORF
YPR160W	39.865	0.99	4	138.8699	1	YPR160W	GPH1 SGDID:S000006364,Non-essential glycogen phosphorylase required for the mobilization of glycogen, activity is regulated by cyclic AMP-mediated phosphorylation, expression is regulated by stress-response elements and by the HOG MAP kinase pathway, Chr XVI from 861302-864010, Verified ORF
YOR117W	25.9	1.00	28	1511.3434	1	YOR117W	RPT5 SGDID:S000005643,One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; recruited to the GAL1-10 promoter region upon induction of transcription, Chr XV from 545030-546334, Verified ORF
YIL034C	12.59	1.00	15	1665.5989	1	YIL034C	CAP2 SGDID:S000001296,Beta subunit of the capping protein (CP) heterodimer (Cap1p and Cap2p) which binds to the barbed ends of actin filaments preventing further polymerization; localized predominantly to cortical actin patches, Chr IX from 290088-289225, reverse complement, Verified ORF
YDR064W	13.27	1.00	232	24441.169	1	YDR064W	RPS13 SGDID:S000002471,Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S15 and rat S13 ribosomal proteins, Chr IV from 579456-579476,580016-580450, Verified ORF
YBL015W	22.507	1.00	14	869.5916	1	YBL015W	ACH1 SGDID:S000000111,Acetyl-coA hydrolase, primarily localized to mitochondria; required for acetate utilization and for diploid pseudohyphal growth, Chr II from 194125-195705, Verified ORF
YLR148W	49.31	0.81	1	22.9643	1	YLR148W	PEP3 SGDID:S000004138,Vacuolar peripheral membrane protein that promotes vesicular docking\fusion reactions in conjunction with SNARE proteins, required for vacuolar biogenesis, forms complex with Pep5p that mediates protein transport to the vacuole, Chr XII from 434642-437398, Verified ORF
YML068W	18.83	0.89	4	264.3045	1	YML068W	ITT1 SGDID:S000004533,Protein that modulates the efficiency of translation termination, interacts with translation release factors eRF1 (Sup45p) and eRF3 (Sup35p) in vitro, contains a zinc finger domain characteristic of the TRIAD class of proteins, Chr XIII from 137550-138944, Verified ORF
YLR195C	21.57	0.68	1	44.072	1	YLR195C	NMT1 SGDID:S000004185,N-myristoyl transferase, catalyzes the cotranslational, covalent attachment of myristic acid to the N-terminal glycine residue of several proteins involved in cellular growth and signal transduction, Chr XII from 543306-541939, reverse complement, Verified ORF
YDL089W	18.648	0.99	5	371.0888	1	YDL089W	YDL089W SGDID:S000002247,Protein of unknown function; interacts with meiotic division protein Csm1p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery, potential Cdc28p substrate, Chr IV from 296820-298274, Uncharacterized ORF
YIL043C	16.339	1.00	18	1540.1107	1	YIL043C	CBR1 SGDID:S000001305,Microsomal cytochrome b reductase, not essential for viability; also detected in mitochondria, Chr IX from 274925-274071, reverse complement, Verified ORF
YDL160C	17.54	1.00	12	956.4374	1	YDL160C	DHH1 SGDID:S000002319,Cytoplasmic DExD\H-box helicase, stimulates mRNA decapping, coordinates distinct steps in mRNA function and decay, interacts with both the decapping and deadenylase complexes, may have a role in mRNA export and translation, Chr IV from 171931-170411, reverse complement, Verified ORF
YFR004W	12.12	1.00	7	807.4215	1	YFR004W	RPN11 SGDID:S000001900,Metalloprotease subunit of the 19S regulatory particle of the 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates, Chr VI from 153388-154308, Verified ORF
YCL002C	5.4	0.95	9	2213.4884	1	YCL002C	YCL002C SGDID:S000000508,Hypothetical protein, Chr III from 111674-111633,111556-110843, reverse complement, Uncharacterized ORF
YDR174W	9.89	1.00	32	4523.3333	1	YDR174W	HMO1 SGDID:S000002581,Chromatin associated high mobility group (HMG) family member involved in genome maintenance; rDNA-binding component of the Pol I transcription system; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase, Chr IV from 812107-812847, Verified ORF
YDL054C	8.55	0.82	1	134.0764	1	YDL054C	MCH1 SGDID:S000002212,Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport, Chr IV from 361285-359825, reverse complement, Verified ORF
YGR231C	9.039	1.00	11	1701.2855	1	YGR231C	PHB2 SGDID:S000003463,Subunit of the prohibitin complex (Phb1p-Phb2p), a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation, Chr VII from 953483-952551, reverse complement, Verified ORF
YMR266W	29.07	0.68	3	98.1047	1	YMR266W	YMR266W SGDID:S000004879,Membrane protein of unknown function; overexpression suppresses NaCl sensitivity of sro7 mutant, Chr XIII from 798517-801378, Uncharacterized ORF
YGR034W	6.03	1.00	21	4868.6313	1	YGR034W	RPL26B SGDID:S000003266,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Ap and has similarity to E. coli L24 and rat L26 ribosomal proteins; binds to 5.8S rRNA, Chr VII from 555933-555957,556312-556676, Verified ORF
YPR081C	27.7	1.00	6	302.8143	1	YPR081C	GRS2 SGDID:S000006285,Protein with sequence similarity to Grs1p, which is a glycyl-tRNA synthetase; cannot substitute for Grs1p; possible pseudogene that is expressed at very low levels, Chr XVI from 703968-702112, reverse complement, Verified ORF
YBR026C	16.82	1.00	9	748.0341	1	YBR026C	ETR1 SGDID:S000000230,2-enoyl thioester reductase, member of the medium chain dehydrogenase\reductase family; localized to in mitochondria, where it has a probable role in fatty acid synthesis, Chr II from 294019-292877, reverse complement, Verified ORF
YMR125W	38.588	1.00	6	217.3721	1	YMR125W	STO1 SGDID:S000004732,Large subunit of the nuclear mRNA cap-binding protein complex, interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm; also involved in nuclear mRNA degradation and telomere maintenance; orthologous to mammalian CBP80, Chr XIII from 517538-517562,517885-520445, Verified ORF
YGR054W	23	1.00	10	607.8229	1	YGR054W	YGR054W SGDID:S000003286,Eukaryotic initiation factor (eIF) 2A; associates specifically with both 40S subunits and 80 S ribosomes, and interacts genetically with both eIF5b and eIF4E; homologous to mammalian eIF2A, Chr VII from 596697-598625, Verified ORF
YML092C	11.44	1.00	32	3910.4691	1	YML092C	PRE8 SGDID:S000004557,20S proteasome beta-type subunit, Chr XIII from 86739-85987, reverse complement, Verified ORF
YJL105W	20.839	0.98	5	328.7184	1	YJL105W	SET4 SGDID:S000003641,Protein of unknown function, contains a SET domain, Chr X from 224973-226655, Verified ORF
YKL071W	12.18	0.72	4	330.5598	1	YKL071W	YKL071W SGDID:S000001554,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, Chr XI from 304758-305528, Uncharacterized ORF
YJR103W	21.304	0.98	7	450.161	1	YJR103W	URA8 SGDID:S000003864,Minor CTP synthase isozyme (see also URA7), catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis, Chr X from 620669-622363, Verified ORF
YGL210W	12.94	0.99	5	534.7808	1	YGL210W	YPT32 SGDID:S000003178,GTPase of the Ypt\Rab family, very similar to Ypt31p; involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi, Chr VII from 93797-94465, Verified ORF
YOR191W	74.394	1.00	13	244.2926	1	YOR191W	RIS1 SGDID:S000005717,Member of the SWI\SNF family of DNA-dependent ATPases, plays a role in antagonizing silencing during mating-type switching, contains an N-terminal domain that interacts with Sir4p and a C-terminal SNF2 domain, Chr XV from 692476-697335, Verified ORF
YGL048C	21.856	1.00	47	3006.2984	1	YGL048C	RPT6 SGDID:S000003016,One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; bound by ubiquitin-protein ligases Ubr1p and Ufd4p; localized mainly to the nucleus throughout the cell cycle, Chr VII from 411289-410072, reverse complement, Verified ORF
YDR027C	37.125	0.65	6	146.8598	1	YDR027C	VPS54 SGDID:S000002434,Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; potentially phosphorylated by Cdc28p, Chr IV from 497315-494646, reverse complement, Verified ORF
YFL051C	2.32	0.99	1	596.5572	1	YFL051C	YFL051C SGDID:S000001843,Putative protein of unknown function; YFL051C is not an essential gene, Chr VI from 30540-30058, reverse complement, Uncharacterized ORF
YDL025C	23.469	0.86	6	307.3689	1	YDL025C	YDL025C SGDID:S000002183,Protein of unknown function, potentially phosphorylated by Cdc28p, Chr IV from 407203-405341, reverse complement, Uncharacterized ORF
YGR169C	19.07	0.78	6	343.0836	1	YGR169C	PUS6 SGDID:S000003401,Pseudouridine synthase responsible for modification of cytoplasmic and mitochondrial tRNAs at position 31; mutation of Asp168 to Ala abolishes enzyme activity; not essential for viability, Chr VII from 835908-834694, reverse complement, Verified ORF
YGR083C	18.497	1.00	10	755.7943	1	YGR083C	GCD2 SGDID:S000003315,Delta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression, Chr VII from 646819-644864, reverse complement, Verified ORF
YLR293C	7.527	1.00	52	9657.9808	2	YLR293C,YOR185C	GSP1 SGDID:S000004284,GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; regulated by Prp20p, Rna1p, Yrb1p, Yrb2p, Yrp4p, Yrb30p, Cse1p and Kap95p; yeast Gsp2p homolog, Chr XII from 721432-720773, reverse complement, Verified ORF
YDR341C	39.916	1.00	141	4938.2947	1	YDR341C	YDR341C SGDID:S000002749,Cytoplasmic arginyl-tRNA synthetase, Chr IV from 1153620-1151797, reverse complement, Verified ORF
YOL022C	17.81	1.00	8	627.9585	1	YOL022C	YOL022C SGDID:S000005382,Protein required for cell viability, Chr XV from 281499-280273, reverse complement, Uncharacterized ORF
YGL001C	9.92	1.00	11	1550.1935	1	YGL001C	ERG26 SGDID:S000002969,C-3 sterol dehydrogenase, catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis, Chr VII from 496506-495457, reverse complement, Verified ORF
YHR031C	40.19	0.99	25	860.9186	1	YHR031C	RRM3 SGDID:S000001073,DNA helicase involved in rDNA replication and Ty1 transposition; structurally and functionally related to Pif1p, Chr VIII from 172963-170792, reverse complement, Verified ORF
YLR256W-A	8.47	1.00	8	1320.4181	13	YML040W,YPR158C-C,YLR227W-A,YGR027W-A,YDR098C-A,YLR157C-A,YLR256W-A,YOL103W-A,YGR038C-A,YJR026W,YPL257W-A,YDR365W-A,YER137C-A	YLR256W-A SGDID:S000007377,TyA Gag protein; the main structural constituent of virus-like particles (VLPs), Chr XII from 651119-652441, transposable_element_gene
YLL011W	17.46	0.96	2	153.7311	1	YLL011W	SOF1 SGDID:S000003934,Essential subunit of the U3 (box C+D) snRNP complex required for 2' O-methylation of pre-RNA; has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p, Chr XII from 127522-128991, Verified ORF
YGL090W	22.798	0.88	3	161.887	1	YGL090W	LIF1 SGDID:S000003058,Protein involved in DNA double-strand break repair; physically interacts with DNA ligase 4 (Lig4p); homologous to mammalian XRCC4 protein, Chr VII from 343322-344587, Verified ORF
YML026C	7.58	1.00	239	44079.1902	2	YDR450W,YML026C	RPS18B SGDID:S000004488,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Ap and has similarity to E. coli S13 and rat S18 ribosomal proteins, Chr XIII from 223828-223782,223380-222987, reverse complement, Verified ORF
YLR189C	43.34	1.00	10	322.564	1	YLR189C	ATG26 SGDID:S000004179,UDP-glucose:sterol glucosyltransferase, conserved enzyme involved in synthesis of sterol glucoside membrane lipids, involved in autophagy, Chr XII from 534395-530799, reverse complement, Verified ORF
YHL020C	16.98	0.87	9	644.6574	1	YHL020C	OPI1 SGDID:S000001012,Transcriptional regulator of a variety of genes; phosphorylation by protein kinase A stimulates Opi1p function in negative regulation of phospholipid biosynthetic genes; involved in telomere maintenance, Chr VIII from 67453-66239, reverse complement, Verified ORF
YFL028C	16.188	0.97	1	83.769	1	YFL028C	CAF16 SGDID:S000001866,Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation; putative ABC ATPase; interacts with Ssn2p, Ssn3p, and Ssn8p, Chr VI from 80211-79342, reverse complement, Verified ORF
YBR256C	10.2	1.00	7	959.4067	1	YBR256C	RIB5 SGDID:S000000460,Riboflavin synthase; catalyzes the last step of the riboflavin biosynthesis pathway, Chr II from 728097-727381, reverse complement, Verified ORF
YNL229C	10.11	0.98	2	271.0252	1	YNL229C	URE2 SGDID:S000005173,Nitrogen catabolite repression regulator that acts by inhibition of GLN3 transcription in good nitrogen source; altered form of Ure2p creates [URE3] prion, Chr XIV from 220202-219138, reverse complement, Verified ORF
YOR081C	27.236	0.99	9	457.3401	1	YOR081C	TGL5 SGDID:S000005607,Triacylglycerol lipase involved in TAG mobilization; localizes to lipid particles; potential Cdc28p substrate, Chr XV from 479190-476941, reverse complement, Verified ORF
YLR452C	25.908	0.95	8	410.0951	1	YLR452C	SST2 SGDID:S000004444,GTPase-activating protein for Gpa1p, regulates desensitization to alpha factor pheromone; also required to prevent receptor-independent signaling of the mating pathway; member of the RGS (regulator of G-protein signaling) family, Chr XII from 1041364-1039268, reverse complement, Verified ORF
YGR279C	10.6	0.99	12	1566.8069	1	YGR279C	SCW4 SGDID:S000003511,Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating, Chr VII from 1049964-1048804, reverse complement, Verified ORF
YGL123W	12.62	1.00	237	26253.9046	1	YGL123W	RPS2 SGDID:S000003091,Protein component of the small (40S) subunit, essential for control of translational accuracy; has similarity to E. coli S5 and rat S2 ribosomal proteins, Chr VII from 277623-278387, Verified ORF
YMR005W	16.73	0.67	1	55.9865	1	YMR005W	TAF4 SGDID:S000004607,TFIID subunit (48 kDa), involved in RNA polymerase II transcription initiation; potential Cdc28p substrate, Chr XIII from 276045-277211, Verified ORF
YKL122C	5.46	1.00	14	3584.5967	1	YKL122C	SRP21 SGDID:S000001605,Subunit of the signal recognition particle (SRP), which functions in protein targeting to the endoplasmic reticulum membrane; not found in mammalian SRP; forms a pre-SRP structure in the nucleolus that is translocated to the cytoplasm, Chr XI from 212642-212139, reverse complement, Verified ORF
YML118W	20.588	0.82	1	55.6806	1	YML118W	NGL3 SGDID:S000004587,Putative endonuclease, has a domain similar to a magnesium-dependent endonuclease motif in mRNA deadenylase Ccr4p; similar to Ngl1p and Ngl2p, Chr XIII from 32334-33851, Verified ORF
YDL080C	20.79	1.00	4	268.974	1	YDL080C	THI3 SGDID:S000002238,Probable decarboxylase, required for expression of enzymes involved in thiamine biosynthesis; may have a role in catabolism of amino acids to long-chain and complex alcohols, Chr IV from 312471-310642, reverse complement, Verified ORF
YMR062C	24.34	1.00	8	459.4881	1	YMR062C	ECM40 SGDID:S000004666,Mitochondrial ornithine acetyltransferase, catalyzes the fifth step in arginine biosynthesis; also possesses acetylglutamate synthase activity, regenerates acetylglutamate while forming ornithine, Chr XIII from 396378-395053, reverse complement, Verified ORF
YDR368W	20.459	1.00	64	4373.2115	1	YDR368W	YPR1 SGDID:S000002776,2-methylbutyraldehyde reductase, may be involved in isoleucine catabolism, Chr IV from 1213896-1214834, Verified ORF
YEL001C	2.15	0.70	1	455.1604	1	YEL001C	YEL001C SGDID:S000000727,Putative protein of unknown function; green fluorescent protein (GFP)-fusion localizes to the ER; YEL001C is non-essential, Chr V from 150977-150300, reverse complement, Uncharacterized ORF
YJR134C	37.69	0.66	2	48.9612	1	YJR134C	SGM1 SGDID:S000003895,Protein of unknown function, required for wild-type growth rate on galactose and mannose; localizes to COPI coated vesicles and the Golgi apparatus, Chr X from 675768-673645, reverse complement, Verified ORF
YOL109W	6.16	1.00	74	16794.0684	1	YOL109W	ZEO1 SGDID:S000005469,Peripheral membrane protein of the plasma membrane that interacts with Mid2p; regulates the cell integrity pathway mediated by Pkc1p and Slt2p, Chr XV from 110297-110638, Verified ORF
YLR179C	9.55	1.00	47	6880.1736	1	YLR179C	YLR179C SGDID:S000004169,Protein of unknown function, transcription is activated by paralogous proteins Yrm1p and Yrr1p along with proteins involved in multidrug resistance; GFP-tagged protein localizes to the cytoplasm and nucleus; YLR179C is not essential, Chr XII from 514715-514110, reverse complement, Uncharacterized ORF
YDL034W	4.55	0.73	3	672.88	1	YDL034W	YDL034W SGDID:S000002192,Hypothetical protein, Chr IV from 391780-392124, Dubious ORF
YAR007C	26.98	1.00	51	2642.6104	1	YAR007C	RFA1 SGDID:S000000065,Subunit of heterotrimeric Replication Factor A (RF-A), which is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination, Chr I from 158621-156756, reverse complement, Verified ORF
YPL061W	30.46	1.00	360	16522.5667	1	YPL061W	ALD6 SGDID:S000005982,Cytosolic aldehyde dehydrogenase that is activated by Mg2+ and utilizes NADP+ as the preferred coenzyme; required for the conversion of acetaldehyde to acetate; constitutively expressed, Chr XVI from 432585-434087, Verified ORF
YJL060W	22.59	0.84	1	51.9837	1	YJL060W	BNA3 SGDID:S000003596,Arylformamidase, involved in biosynthesis of nicotinic acid from tryptophan via kynurenine pathway; potential Cdc28p substrate, Chr X from 323303-324637, Verified ORF
YPR062W	5.848	1.00	11	2629.6032	1	YPR062W	FCY1 SGDID:S000006266,Cytosine deaminase, zinc metalloenzyme that catalyzes the hydrolytic deamination of cytosine to uracil; of biomedical interest because it also catalyzes the deamination of 5-fluorocytosine (5FC) to form anticancer drug 5-fluorouracil (5FU), Chr XVI from 677162-677638, Verified ORF
YLR208W	13.287	1.00	35	3682.5276	1	YLR208W	SEC13 SGDID:S000004198,Component of both the Nup84 nuclear pore sub-complex and of the COPII complex (Sar1p, Sec13p, Sec16p, Sec23p, Sec24p, Sec31p, Sfb2p, and Sfb3p) which is important for the formation of ER to Golgi transport vesicles, Chr XII from 559553-560446, Verified ORF
YDR165W	23.55	1.00	25	1484.0687	1	YDR165W	TRM82 SGDID:S000002572,Subunit of a tRNA methyltransferase complex composed of Trm8p and Trm82p that catalyzes 7-methylguanosine modification of tRNA, Chr IV from 784868-786202, Verified ORF
YMR222C	4.53	0.94	2	580.1824	1	YMR222C	FSH2 SGDID:S000004835,Serine hydrolase that localizes to both the nucleus and cytoplasm; sequence is similar to Fsh1p and Fsh3p, Chr XIII from 716308-715637, reverse complement, Verified ORF
YML078W	9.899	0.99	5	699.0669	1	YML078W	CPR3 SGDID:S000004543,Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; involved in protein refolding after import into mitochondria, Chr XIII from 111002-111550, Verified ORF
YMR146C	15.348	1.00	73	6649.3008	1	YMR146C	TIF34 SGDID:S000004754,Subunit of the core complex of translation initiation factor 3(eIF3), which is essential for translation, Chr XIII from 558523-557480, reverse complement, Verified ORF
YDR128W	45.639	1.00	5	153.1576	1	YDR128W	YDR128W SGDID:S000002535,Hypothetical protein, Chr IV from 709546-712992, Uncharacterized ORF
YML085C	13.59	1.00	24	2468.8613	1	YML085C	TUB1 SGDID:S000004550,Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules, Chr XIII from 99400-99376,99259-97941, reverse complement, Verified ORF
YDR326C	50.758	0.99	4	109.0675	1	YDR326C	YDR326C SGDID:S000002734,Hypothetical protein, Chr IV from 1124920-1120604, reverse complement, Uncharacterized ORF
YLR330W	18.06	0.97	9	675.7738	1	YLR330W	CHS5 SGDID:S000004322,Protein of unknown function, involved in chitin biosynthesis by regulating Chs3p localization, also involved in cell fusion during mating, Chr XII from 787664-789679, Verified ORF
YPL198W	11.42	1.00	416	50925.1291	2	YPL198W,YGL076C	RPL7B SGDID:S000006119,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Ap and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2), Chr XVI from 173151-173161,173571-173664,174072-174701, Verified ORF
YGL062W	46.899	0.94	3	84.0602	1	YGL062W	PYC1 SGDID:S000003030,Pyruvate carboxylase isoform, cytoplasmic enzyme that converts pyruvate to oxaloacetate; highly similar to isoform Pyc2p but differentially regulated; mutations in the human homolog are associated with lactic acidosis, Chr VII from 385199-388735, Verified ORF
YER080W	42.13	1.00	8	265.4626	1	YER080W	YER080W SGDID:S000000882,The authentic, non-tagged protein was localized to the mitochondria, Chr V from 319959-321842, Uncharacterized ORF
YHR179W	16.98	1.00	241	19841.9462	1	YHR179W	OYE2 SGDID:S000001222,Widely conserved NADPH oxidoreductase containing flavin mononucleotide (FMN), homologous to Oye3p with slight differences in ligand binding and catalytic properties; may be involved in sterol metabolism, Chr VIII from 462502-463704, Verified ORF
YER057C	4.48	1.00	33	10297.7142	1	YER057C	HMF1 SGDID:S000000859,Member of the p14.5 protein family with similarity to Mmf1p, functionally complements Mmf1p function when targeted to mitochondria; heat shock inducible; high-dosage growth inhibitor; forms a homotrimer in vitro, Chr V from 271124-270735, reverse complement, Verified ORF
YCR087C-A	4.768	0.97	2	568.8141	1	YCR087C-A	YCR087C-A SGDID:S000007223,Hypothetical protein, Chr III from 264464-264003, reverse complement, Uncharacterized ORF
YOR116C	67.014	0.99	12	247.8311	1	YOR116C	RPO31 SGDID:S000005642,RNA polymerase III subunit C160, part of core enzyme; similar to bacterial beta-prime subunit, Chr XV from 544146-539764, reverse complement, Verified ORF
YBL074C	14.76	0.85	5	402.5385	1	YBL074C	AAR2 SGDID:S000000170,Component of the U5 snRNP, required for splicing of U3 precursors; originally described as a splicing factor specifically required for splicing pre-mRNA of the MATa1 cistron, Chr II from 87787-86720, reverse complement, Verified ORF
YLR029C	6.18	1.00	93	21037.7546	1	YLR029C	RPL15A SGDID:S000004019,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Bp and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA, Chr XII from 202591-201977, reverse complement, Verified ORF
YLR337C	21.59	1.00	3	194.2555	1	YLR337C	VRP1 SGDID:S000004329,Proline-rich, actin-associated protein involved in cytoskeletal organization and cytokinesis; related to mammalian Wiskott-Aldrich syndrome protein (WASP)-interacting protein (WIP), Chr XII from 805106-802653, reverse complement, Verified ORF
YDR060W	49.979	1.00	27	755.2332	1	YDR060W	MAK21 SGDID:S000002467,Constituent of 66S pre-ribosomal particles, required for large (60S) ribosomal subunit biogenesis; involved in nuclear export of pre-ribosomes; required for maintenance of dsRNA virus; homolog of human CAATT-binding protein, Chr IV from 570646-573723, Verified ORF
YMR155W	10.69	0.76	4	397.5582	1	YMR155W	YMR155W SGDID:S000004764,Hypothetical protein, Chr XIII from 568550-570193, Uncharacterized ORF
YKL093W	13.38	1.00	7	731.3863	1	YKL093W	MBR1 SGDID:S000001576,Protein involved in mitochondrial functions and stress response; overexpression suppresses growth defects of hap2, hap3, and hap4 mutants, Chr XI from 264433-265452, Verified ORF
YML088W	20.36	0.99	7	475.8393	1	YML088W	UFO1 SGDID:S000004553,F-box receptor protein, subunit of the Skp1-Cdc53-F-box receptor (SCF) E3 ubiquitin ligase complex; binds to phosphorylated Ho endonuclease, allowing its ubiquitylation by SCF and subsequent degradation, Chr XIII from 92235-94241, Verified ORF
YDR195W	26.94	0.98	3	152.5649	1	YDR195W	REF2 SGDID:S000002603,RNA-binding protein involved in the cleavage step of mRNA 3'-end formation prior to polyadenylation, and in snoRNA maturation; part of holo-CPF subcomplex APT, which associates with 3'-ends of snoRNA- and mRNA-encoding genes, Chr IV from 848596-850197, Verified ORF
YDL101C	19.137	1.00	8	584.4145	1	YDL101C	DUN1 SGDID:S000002259,Cell-cycle checkpoint serine-threonine kinase required for DNA damage-induced transcription of certain target genes, phosphorylation of Rad55p and Sml1p, and transient G2\M arrest after DNA damage; also regulates postreplicative DNA repair, Chr IV from 281848-280307, reverse complement, Verified ORF
YIL140W	26.55	0.71	2	74.7702	1	YIL140W	AXL2 SGDID:S000001402,Integral plasma membrane protein required for axial budding in haploid cells, localizes to the incipient bud site and bud neck; glycosylated by Pmt4p; potential Cdc28p substrate, Chr IX from 85366-87837, Verified ORF
YDL102W	51.224	1.00	13	354.7927	1	YDL102W	CDC2 SGDID:S000002260,Catalytic subunit of DNA polymerase delta; required for chromosomal DNA replication during mitosis and meiosis, intragenic recombination, repair of double strand DNA breaks, and DNA replication during nucleotide excision repair (NER), Chr IV from 276872-280165, Verified ORF
YER008C	52.998	0.88	9	208.9154	1	YER008C	SEC3 SGDID:S000000810,Non-essential subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, Exo84p) which mediates targeting of post-Golgi vesicles to sites of active exocytosis; Sec3p specifically is a spatial landmark for secretion, Chr V from 171817-167807, reverse complement, Verified ORF
YBR126C	16.45	1.00	7	594.8905	1	YBR126C	TPS1 SGDID:S000000330,Synthase subunit of trehalose-6-phosphate synthase\phosphatase complex, which synthesizes the storage carbohydrate trehalose; also found in a monomeric form; expression is induced by the stress response and repressed by the Ras-cAMP pathway, Chr II from 490386-488899, reverse complement, Verified ORF
YBL026W	6.25	0.97	4	867.8738	1	YBL026W	LSM2 SGDID:S000000122,Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA, Chr II from 170626-170679,170808-171041, Verified ORF
YKL142W	16.94	1.00	27	2228.2056	1	YKL142W	MRP8 SGDID:S000001625,Putative mitochondrial ribosomal protein, has similarity to E. coli ribosomal protein S2, Chr XI from 178520-179179, Verified ORF
YNR021W	11.73	1.00	7	834.2667	1	YNR021W	YNR021W SGDID:S000005304,Hypothetical protein, Chr XIV from 668379-669593, Uncharacterized ORF
YGR080W	12.1	0.96	2	221.8302	1	YGR080W	TWF1 SGDID:S000003312,Twinfilin, highly conserved actin monomer-sequestering protein involved in regulation of the cortical actin cytoskeleton, composed of two cofilin-like regions, localizes actin monomers to sites of rapid filament assembly, Chr VII from 642014-643012, Verified ORF
YIL110W	10.699	0.98	1	128.0524	1	YIL110W	YIL110W SGDID:S000001372,Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; deletion mutant exhibits a weak vacuolar protein sorting defect and enhanced resistance to the glucan synthase inhibitor caspofungin, Chr IX from 156042-157175, Uncharacterized ORF
YDL141W	27.325	0.91	5	232.7856	1	YDL141W	BPL1 SGDID:S000002300,Biotin:apoprotein ligase, covalently modifies proteins with the addition of biotin, required for acetyl-CoA carboxylase (Acc1p) holoenzyme formation, Chr IV from 203040-205112, Verified ORF
YBL055C	22.108	0.99	11	688.6258	1	YBL055C	YBL055C SGDID:S000000151,Hypothetical protein, Chr II from 116832-115576, reverse complement, Uncharacterized ORF
YDR429C	11	1.00	67	8515.0466	1	YDR429C	TIF35 SGDID:S000002837,Subunit of the core complex of translation initiation factor 3(eIF3), which is essential for translation, Chr IV from 1325293-1324469, reverse complement, Verified ORF
YOR004W	10.4	0.87	2	233.8949	1	YOR004W	YOR004W SGDID:S000005530,Protein required for cell viability, Chr XV from 333593-334357, Uncharacterized ORF
YML010W	44.869	1.00	24	747.7729	1	YML010W	SPT5 SGDID:S000004470,Protein that forms a complex with Spt4p and mediates both activation and inhibition of transcription elongation; Spt4p-Spt5p complex also plays a role in pre-mRNA processing, Chr XIII from 247677-250868, Verified ORF
YPL191C	8.98	0.82	14	1787.1889	1	YPL191C	YPL191C SGDID:S000006112,Hypothetical protein, Chr XVI from 184678-183596, reverse complement, Uncharacterized ORF
YMR013C	9.16	1.00	15	2289.2894	1	YMR013C	SEC59 SGDID:S000004615,Dolichol kinase, catalyzes the terminal step in dolichyl monophosphate (Dol-P) biosynthesis; required for viability and for normal rates of lipid intermediate synthesis and protein N-glycosylation, Chr XIII from 296737-295178, reverse complement, Verified ORF
YLL010C	11.45	0.84	3	307.6804	1	YLL010C	PSR1 SGDID:S000003933,Plasma membrane associated protein phosphatase involved in the general stress response; required along with binding partner Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p, Chr XII from 130612-129329, reverse complement, Verified ORF
YLR272C	47.96	1.00	12	349.7896	1	YLR272C	YCS4 SGDID:S000004262,Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation, chromatin binding of condensin and silencing at the mating type locus, Chr XII from 687204-683674, reverse complement, Verified ORF
YNL104C	20.78	1.00	66	4440.2078	1	YNL104C	LEU4 SGDID:S000005048,Alpha-isopropylmalate synthase (2-isopropylmalate synthase); the main isozyme responsible for the first step in the leucine biosynthesis pathway, Chr XIV from 426756-424897, reverse complement, Verified ORF
YIL005W	32.82	0.91	2	77.5242	1	YIL005W	EPS1 SGDID:S000001267,Pdi1p (protein disulfide isomerase)-related protein involved in endoplasmic reticulum retention of resident ER proteins, Chr IX from 345689-347794, Verified ORF
YOR365C	16.178	0.76	6	394.0441	1	YOR365C	YOR365C SGDID:S000005892,Hypothetical protein, Chr XV from 1025570-1023459, reverse complement, Uncharacterized ORF
YFL038C	11.74	1.00	22	2619.7478	1	YFL038C	YPT1 SGDID:S000001856,Ras-like small GTPase, involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p), Chr VI from 55985-55365, reverse complement, Verified ORF
YKR056W	32.759	0.72	1	30.726	1	YKR056W	TRM2 SGDID:S000001764,tRNA methyltransferase, 5-methylates the uridine residue at position 54 of tRNAs and may also have a role in tRNA stabilization or maturation; previously thought to be an endo-exonuclease, Chr XI from 549090-551009, Verified ORF
YPL237W	20.125	1.00	29	2014.4988	1	YPL237W	SUI3 SGDID:S000006158,Beta subunit of the translation initiation factor eIF2, involved in the identification of the start codon; proposed to be involved in mRNA binding, Chr XVI from 100496-101353, Verified ORF
YPL240C	27.23	1.00	807	41431.5142	1	YPL240C	HSP82 SGDID:S000006161,Cytoplasmic chaperone (Hsp90 family) required for pheromone signaling and negative regulation of Hsf1p; docks with the mitochondrial import receptor Tom70p for preprotein delivery; interacts with co-chaperones Cns1p, Cpr6p, Cpr7p, and Sti1p, Chr XVI from 98625-96496, reverse complement, Verified ORF
YNR030W	13.049	0.73	1	78.2078	1	YNR030W	ALG12 SGDID:S000005313,Alpha-1,6-mannosyltransferase localized to the ER; responsible for the addition of the alpha-1,6 mannose to dolichol-linked Man7GlcNAc2, acts in the dolichol pathway for N-glycosylation, Chr XIV from 678801-680456, Verified ORF
YHR069C	13.46	0.97	1	100.7468	1	YHR069C	RRP4 SGDID:S000001111,Protein involved in rRNA processing; component of the exosome 3- 5 exonuclease complex with Rrp41p, Rrp42p, Rrp43p and Dis3p, Chr VIII from 234660-233581, reverse complement, Verified ORF
YER167W	19.88	0.96	10	675.087	1	YER167W	BCK2 SGDID:S000000969,Protein rich in serine and threonine residues involved in protein kinase C signaling pathway, which controls cell integrity; overproduction suppresses pkc1 mutations, Chr V from 518211-520766, Verified ORF
YPL053C	20.92	1.00	3	200.4769	1	YPL053C	KTR6 SGDID:S000005974,Probable mannosylphosphate transferase involved in the synthesis of core oligosaccharides in protein glycosylation pathway; member of the KRE2\MNT1 mannosyltransferase family, Chr XVI from 458455-457115, reverse complement, Verified ORF
YJR070C	16.36	1.00	134	11450.5516	1	YJR070C	LIA1 SGDID:S000003831,Deoxyhypusine hydroxylase, a HEAT-repeat containing metalloenzyme that catalyses hypusine formation; binds to and is required for the modification of Hyp2p (eIF5A); complements S. pombe mmd1 mutants defective in mitochondrial positioning, Chr X from 570513-569536, reverse complement, Verified ORF
YBR265W	8.83	0.73	38	4391.882	1	YBR265W	TSC10 SGDID:S000000469,3-ketosphinganine reductase, catalyzes the second step in phytosphingosine synthesis, essential for growth in the absence of exogenous dihydrosphingosine or phytosphingosine, member of short chain dehydrogenase\reductase protein family, Chr II from 738577-739539, Verified ORF
YDL143W	21.58	1.00	40	2591.2747	1	YDL143W	CCT4 SGDID:S000002302,Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo, Chr IV from 199997-201583, Verified ORF
YPL231W	85.007	1.00	461	7581.4303	1	YPL231W	FAS2 SGDID:S000006152,Alpha subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains beta-ketoacyl reductase and beta-ketoacyl synthase activities, Chr XVI from 108652-114315, Verified ORF
YMR290C	28.05	1.00	39	1943.7332	1	YMR290C	HAS1 SGDID:S000004903,ATP-dependent RNA helicase; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles, Chr XIII from 851590-850073, reverse complement, Verified ORF
YHR021C	2.68	0.99	7	3614.9588	2	YKL156W,YHR021C	RPS27B SGDID:S000001063,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps27Ap and has similarity to rat S27 ribosomal protein, Chr VIII from 148662-148660,148109-147864, reverse complement, Verified ORF
YNR040W	11	0.97	1	123.2775	1	YNR040W	YNR040W SGDID:S000005323,Hypothetical protein, Chr XIV from 699692-700462, Uncharacterized ORF
YLL045C	9.23999999999999	1.00	375	56736.7178	1	YLL045C	RPL8B SGDID:S000003968,Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits, Chr XII from 48628-47858, reverse complement, Verified ORF
YNL048W	27.919	0.74	3	111.1624	1	YNL048W	ALG11 SGDID:S000004993,Alpha-1,2-mannosyltransferase, catalyzes addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol intermediate during asparagine-linked glycosylation in the ER, Chr XIV from 538174-539820, Verified ORF
YNR034W	16.637	0.95	2	159.6553	1	YNR034W	SOL1 SGDID:S000005317,Protein with a possible role in tRNA export; shows similarity to 6-phosphogluconolactonase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol2p, Sol3p, and Sol4p, Chr XIV from 690323-691288, Verified ORF
YDL045C	13.22	0.88	2	186.117	1	YDL045C	FAD1 SGDID:S000002203,Flavin adenine dinucleotide (FAD) synthetase, performs the second step in synthesis of FAD from riboflavin, Chr IV from 373605-372685, reverse complement, Verified ORF
YPL211W	8.67	0.96	12	1857.5405	1	YPL211W	NIP7 SGDID:S000006132,Nucleolar protein required for 60S ribosome subunit biogenesis, constituent of 66S pre-ribosomal particles; physically interacts with Nop8p and the exosome subunit Rrp43p, Chr XVI from 153494-154039, Verified ORF
YAL038W	39.19	1.00	1286	45874.4233	1	YAL038W	CDC19 SGDID:S000000036,Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration, Chr I from 71787-73289, Verified ORF
YDR087C	12.65	0.98	1	108.3029	1	YDR087C	RRP1 SGDID:S000002494,Essential evolutionarily conserved nucleolar protein necessary for biogenesis of 60S ribosomal subunits and processing of pre-rRNAs to mature rRNAs, associated with several distinct 66S pre-ribosomal particles, Chr IV from 618303-617467, reverse complement, Verified ORF
YML012W	6.79	0.84	2	345.8951	1	YML012W	ERV25 SGDID:S000004473,Protein that forms a heterotrimeric complex with Erp1, Erp2p, and Emp24, member of the p24 family involved in endoplasmic reticulum to Golgi transport, Chr XIII from 246116-246751, Verified ORF
YGL104C	4.46	0.75	1	235.0884	1	YGL104C	VPS73 SGDID:S000003072,Mitochondrial protein of unknown function involved in vacuolar protein sorting, Chr VII from 310176-308716, reverse complement, Verified ORF
YGR128C	28.899	1.00	4	193.5004	1	YGR128C	UTP8 SGDID:S000003360,Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA, Chr VII from 750096-747955, reverse complement, Verified ORF
YHR124W	29.758	1.00	28	1315.4041	1	YHR124W	NDT80 SGDID:S000001166,Meiosis-specific transcription factor required for exit from pachytene and for full meiotic recombination; activates middle sporulation genes; competes with Sum1p for binding to promoters containing middle sporulation elements (MSE), Chr VIII from 356564-358447, Verified ORF
YPL210C	26.147	1.00	6	320.7999	1	YPL210C	SRP72 SGDID:S000006131,Core component of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane, Chr XVI from 156211-154289, reverse complement, Verified ORF
Q0250	5.23	0.98	6	1571.7394	1	Q0250	COX2 SGDID:S000007281,Subunit II of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits, Chr Mito from 73758-74513, Verified ORF
YGR130C	34.02	1.00	3	123.2797	1	YGR130C	YGR130C SGDID:S000003362,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; specifically phosphorylated in vitro by mammalian diphosphoinositol pentakisphosphate (IP7), Chr VII from 753849-751399, reverse complement, Uncharacterized ORF
YBL060W	25.09	0.91	14	709.8615	1	YBL060W	YBL060W SGDID:S000000156,Hypothetical protein, Chr II from 107934-109997, Uncharacterized ORF
YHL025W	7.37	0.88	4	667.698	1	YHL025W	SNF6 SGDID:S000001017,Subunit of the SWI\SNF chromatin remodeling complex involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf5p, Chr VIII from 54849-55847, Verified ORF
YOR206W	30.25	1.00	32	1478.8683	1	YOR206W	NOC2 SGDID:S000005732,Protein that forms a nucleolar complex with Mak21p that binds to 90S and 66S pre-ribosomes, as well as a nuclear complex with Noc3p that binds to 66S pre-ribosomes; both complexes mediate intranuclear transport of ribosomal precursors, Chr XV from 727513-729645, Verified ORF
YDR164C	35.286	1.00	4	158.4756	1	YDR164C	SEC1 SGDID:S000002571,Sm-like protein involved in docking and fusion of exocytic vesicles through binding to assembled SNARE complexes at the membrane; localization to sites of secretion (bud neck and bud tip) is dependent on SNARE function, Chr IV from 784212-782038, reverse complement, Verified ORF
YGR155W	39.968	1.00	353	12347.1635	1	YGR155W	CYS4 SGDID:S000003387,Cystathionine beta-synthase, catalyzes the synthesis of cystathionine from serine and homocysteine, the first committed step in cysteine biosynthesis, Chr VII from 798548-800071, Verified ORF
YER103W	27.229	0.99	5	254.1431	1	YER103W	SSA4 SGDID:S000000905,Heat shock protein that is highly induced upon stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the HSP70 family; cytoplasmic protein that concentrates in nuclei upon starvation, Chr V from 364585-366513, Verified ORF
YCR067C	26.97	1.00	7	362.8457	1	YCR067C	SED4 SGDID:S000000663,Integral endoplasmic reticulum membrane protein, functions as a positive regulator of Sar1p probably through inhibition of GTPase activation by Sec23p; binds Sec16p, participates in vesicle formation, similar to Sec12p, Chr III from 236318-233121, reverse complement, Verified ORF
YDL132W	40.726	0.98	6	201.8415	1	YDL132W	CDC53 SGDID:S000002290,Cullin, structural protein of SCF complexes (which also contain Skp1p, Cdc34p, and an F-box protein) involved in ubiquitination; SCF promotes the G1-S transition by targeting G1 cyclins and the Cln-CDK inhibitor Sic1p for degradation, Chr IV from 224304-226751, Verified ORF
YDR464W	54.58	1.00	40	1024.5457	1	YDR464W	SPP41 SGDID:S000002872,Protein involved in negative regulation of expression of spliceosome components PRP4 and PRP3, Chr IV from 1388864-1393171, Verified ORF
YGR056W	34.255	0.69	5	140.7991	1	YGR056W	RSC1 SGDID:S000003288,One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; required for expression of mid-late sporulation-specific genes; contains two essential  bromodomains, a bromo-adjacent homology (BAH) domain, and an AT hook, Chr VII from 601665-604451, Verified ORF
YGR210C	22.036	1.00	9	570.9717	1	YGR210C	YGR210C SGDID:S000003442,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, Chr VII from 914743-913508, reverse complement, Uncharacterized ORF
YOR168W	46.736	1.00	98	2931.4294	1	YOR168W	GLN4 SGDID:S000005694,Glutamine tRNA synthetase, monomeric class I tRNA synthetase that catalyzes the specific glutaminylation of tRNA(Glu); N-terminal domain proposed to be involved in enzyme-tRNA interactions, Chr XV from 649304-651733, Verified ORF
YKR015C	28.12	0.82	1	40.7665	1	YKR015C	YKR015C SGDID:S000001723,Putative protein of unknown function, Chr XI from 468310-466604, reverse complement, Uncharacterized ORF
YOR128C	25.92	1.00	9	485.4141	1	YOR128C	ADE2 SGDID:S000005654,Phosphoribosylaminoimidazole carboxylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; red pigment accumulates in mutant cells deprived of adenine, Chr XV from 566192-564477, reverse complement, Verified ORF
YAL063C	7.18	0.95	2	369.9423	1	YAL063C	FLO9 SGDID:S000000059,Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation, Chr I from 27969-24001, reverse complement, Verified ORF
YDL060W	28.247	1.00	13	643.3924	1	YDL060W	TSR1 SGDID:S000002218,Protein required for processing of 20S pre-rRNA in the cytoplasm, associates with pre-40S ribosomal particles, Chr IV from 341619-343985, Verified ORF
YFR016C	73.6799999999999	0.75	1	14.2303	1	YFR016C	YFR016C SGDID:S000001912,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and bud; interacts with Spa2p; YFL016C is not an essential gene, Chr VI from 180735-177034, reverse complement, Verified ORF
YIL069C	6.13	1.00	264	60207.1909	2	YIL069C,YER074W	RPS24B SGDID:S000001331,Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein, Chr IX from 232366-232364,231954-231550, reverse complement, Verified ORF
YJR065C	17.83	1.00	15	1176.1015	1	YJR065C	ARP3 SGDID:S000003826,Essential component of the Arp2\3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity, Chr X from 559073-557724, reverse complement, Verified ORF
YIL085C	17.23	1.00	5	405.6856	1	YIL085C	KTR7 SGDID:S000001347,Putative mannosyltransferase involved in protein glycosylation; member of the KRE2\MNT1 mannosyltransferase family, Chr IX from 202040-200487, reverse complement, Verified ORF
YNL002C	12.119	1.00	11	1268.9099	1	YNL002C	RLP7 SGDID:S000004947,Nucleolar protein with similarity to large ribosomal subunit L7 proteins; constituent of 66S pre-ribosomal particles; plays an essential role in processing of precursors to the large ribosomal subunit RNAs, Chr XIV from 627144-626176, reverse complement, Verified ORF
YOR086C	48.709	1.00	8	229.6072	1	YOR086C	TCB1 SGDID:S000005612,Contains three calcium and lipid binding domains; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; C-terminal portion of Tcb1p, Tcb2p and Tcb3p interact, Chr XV from 486781-483221, reverse complement, Verified ORF
YGL195W	120.039	1.00	149	1735.277	1	YGL195W	GCN1 SGDID:S000003163,Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn20p; proposed to stimulate Gcn2p activation by an uncharged tRNA, Chr VII from 131531-139549, Verified ORF
YJL209W	28.478	0.95	7	326.4503	1	YJL209W	CBP1 SGDID:S000003745,Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p, Chr X from 38005-39969, Verified ORF
YHR193C	8.038	1.00	129	22436.0614	1	YHR193C	EGD2 SGDID:S000001236,Alpha subunit of the heteromeric nascent polypeptide-associated complex (NAC) involved in protein sorting and translocation, associated with cytoplasmic ribosomes , Chr VIII from 488236-487712, reverse complement, Verified ORF
YMR173W-A	9.08	0.73	2	224.7873	1	YMR173W-A	YMR173W-A SGDID:S000004785,Hypothetical protein, Chr XIII from 608896-610080, Dubious ORF
YJR105W	12.44	1.00	151	16969.2043	1	YJR105W	ADO1 SGDID:S000003866,Adenosine kinase, required for the utilization of S-adenosylmethionine (AdoMet); may be involved in recycling adenosine produced through the methyl cycle, Chr X from 623495-624517, Verified ORF
YOR005C	43.345	0.99	6	191.5809	1	YOR005C	DNL4 SGDID:S000005531,DNA ligase required for nonhomologous end-joining (NHEJ), forms stable heterodimer with required cofactor Lif1p, catalyzes DNA ligation as part of a complex with Lif1p and Nej1p; involved in meiosis, not essential for vegetative growth, Chr XV from 337344-334510, reverse complement, Verified ORF
YLR413W	9.15	1.00	16	2444.5774	1	YLR413W	YLR413W SGDID:S000004405,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, Chr XII from 951153-953180, Uncharacterized ORF
YOR354C	27.14	1.00	6	309.0625	1	YOR354C	MSC6 SGDID:S000005881,Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to mitochondria; msc6 mutants are defective in directing meiotic recombination events to homologous chromatids, Chr XV from 1003222-1001144, reverse complement, Verified ORF
YER161C	13.87	0.79	2	159.2522	1	YER161C	SPT2 SGDID:S000000963,Protein involved in negative regulation of transcription, exhibits regulated interactions with both histones and SWI-SNF components, has similarity to mammalian HMG1 proteins, Chr V from 500343-499342, reverse complement, Verified ORF
YMR143W	8.81	1.00	72	11425.1392	2	YMR143W,YDL083C	RPS16A SGDID:S000004751,Protein component of the small (40S) ribosomal subunit; identical to Rps16Bp and has similarity to E. coli S9 and rat S16 ribosomal proteins, Chr XIII from 551927-551950,552495-552902, Verified ORF
YBR092C	10.14	0.99	2	272.9808	1	YBR092C	PHO3 SGDID:S000000296,Constitutively expressed acid phosphatase similar to Pho5p; brought to the cell surface by transport vesicles; hydrolyzes thiamin phosphates in the periplasmic space, increasing cellular thiamin uptake; expression is repressed by thiamin, Chr II from 429095-427692, reverse complement, Verified ORF
YGR175C	17.78	0.97	9	686.416	1	YGR175C	ERG1 SGDID:S000003407,Squalene epoxidase, catalyzes the epoxidation of squalene to 2,3-oxidosqualene; plays an essential role in the ergosterol-biosynthesis pathway and is the specific target of the antifungal drug terbinafine, Chr VII from 848428-846938, reverse complement, Verified ORF
YBR087W	15.307	0.99	3	271.2509	1	YBR087W	RFC5 SGDID:S000000291,Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon, Chr II from 423759-424823, Verified ORF
YCR081W	56.594	1.00	36	889.2769	1	YCR081W	SRB8 SGDID:S000000677,Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; involved in glucose repression, Chr III from 254368-258651, Verified ORF
YLR429W	31.12	1.00	35	1572.2925	1	YLR429W	CRN1 SGDID:S000004421,Coronin, cortical actin cytoskeletal component that associates with the Arp2p\Arp3p complex to regulate its activity, Chr XII from 990774-992729, Verified ORF
YGL242C	6.47	0.99	1	213.9123	1	YGL242C	YGL242C SGDID:S000003211,Putative protein of unknown function; deletion mutant is viable, Chr VII from 45197-44652, reverse complement, Uncharacterized ORF
YDR539W	18.71	0.97	1	72.4774	1	YDR539W	YDR539W SGDID:S000002947,Hypothetical protein, Chr IV from 1512084-1513595, Uncharacterized ORF
YKL211C	18.95	1.00	10	737.727	1	YKL211C	TRP3 SGDID:S000001694,Bifunctional enzyme exhibiting both indole-3-glycerol-phosphate synthase and anthranilate synthase activities, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp2p, Chr XI from 38154-36700, reverse complement, Verified ORF
YMR111C	23.809	0.84	3	147.9668	1	YMR111C	YMR111C SGDID:S000004717,Hypothetical protein, Chr XIII from 493791-492403, reverse complement, Uncharacterized ORF
YJL176C	39.396	0.70	1	24.8399	1	YJL176C	SWI3 SGDID:S000003712,Subunit of the SWI\SNF chromatin remodeling complex, which regulates transcription by remodeling chromosomes; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2, Chr X from 94528-92051, reverse complement, Verified ORF
YHR001W	21.15	0.96	4	253.8199	1	YHR001W	OSH7 SGDID:S000001043,Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability, Chr VIII from 106050-107363, Verified ORF
YHR128W	11.11	1.00	46	5788.2687	1	YHR128W	FUR1 SGDID:S000001170,Uracil phosphoribosyltransferase, synthesizes UMP from uracil; involved in the pyrimidine salvage pathway, Chr VIII from 362118-362768, Verified ORF
YDR225W	3.19	1.00	102	44700.7079	2	YBL003C,YDR225W	HTA1 SGDID:S000002633,One of two nearly identical (see also HTA2) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p , Chr IV from 915526-915924, Verified ORF
YMR192W	42.816	1.00	6	195.907	1	YMR192W	GYL1 SGDID:S000004804,Putative GTPase activating protein (GAP) that may have a role in polarized exocytosis; stimulates Gyp5p GAP activity on Ypt1p, colocalizes with Gyp5p at sites of polarized growth; interacts with Gyp5p, Rvs161p, and Rvs167p, Chr XIII from 647117-649279, Verified ORF
YNR061C	4.82	0.96	5	1392.1919	1	YNR061C	YNR061C SGDID:S000005344,Hypothetical protein, Chr XIV from 743540-742881, reverse complement, Uncharacterized ORF
YLR274W	36.929	0.97	8	293.7643	1	YLR274W	CDC46 SGDID:S000004264,Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase, Chr XII from 691557-693884, Verified ORF
YGR119C	11.729	0.95	2	226.4631	1	YGR119C	NUP57 SGDID:S000003351,Essential subunit of the nuclear pore complex (NPC), functions as the organizing center of an NPC subcomplex containing Nsp1p, Nup49p, Nup57p, and Nic96p, Chr VII from 729676-728051, reverse complement, Verified ORF
YBR009C	5.43	1.00	79	20339.1207	2	YNL030W,YBR009C	HHF1 SGDID:S000000213,One of two identical histone H4 proteins (see also HHF2); core histone required for chromatin assembly and chromosome function; contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity, Chr II from 255682-255371, reverse complement, Verified ORF
YJL056C	19.25	0.65	4	188.8197	1	YJL056C	ZAP1 SGDID:S000003592,Zinc-regulated transcription factor, binds to zinc-responsive promoter elements to induce transcription of certain genes in the presence of zinc; regulates its own transcription; contains seven zinc-finger domains, Chr X from 332990-330348, reverse complement, Verified ORF
YDL103C	29.77	1.00	6	281.7586	1	YDL103C	QRI1 SGDID:S000002261,UDP-N-acetylglucosamine pyrophosphorylase, catalyzes the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), which is important in cell wall biosynthesis, protein N-glycosylation, and GPI anchor biosynthesis, Chr IV from 276581-275148, reverse complement, Verified ORF
YPR189W	65.0379999999999	1.00	10	214.9501	1	YPR189W	SKI3 SGDID:S000006393,Protein involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs; forms complex with Ski2p and Ski8p; required for repressing propagation of dsRNA viruses, Chr XVI from 912660-916958, Verified ORF
YGL135W	10.04	1.00	176	24506.6454	2	YPL220W,YGL135W	RPL1B SGDID:S000003103,N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl1Bp and has similarity to E. coli L1 and rat L10a ribosomal proteins; rpl1a rpl1b double null mutation is lethal, Chr VII from 254646-255299, Verified ORF
YJL122W	7.11	1.00	13	2556.1048	1	YJL122W	YJL122W SGDID:S000003658,Hypothetical protein, Chr X from 189637-190164, Uncharacterized ORF
YBL058W	19.45	1.00	11	790.6385	1	YBL058W	SHP1 SGDID:S000000154,UBX (ubiquitin regulatory X) domain-containing protein that regulates Glc7p phosphatase activity and interacts with Cdc48p; interacts with ubiquitylated proteins in vivo and is required for degradation of a ubiquitylated model substrate, Chr II from 111439-112710, Verified ORF
YBR048W	6.94	1.00	15	3021.5981	2	YDR025W,YBR048W	RPS11B SGDID:S000000252,Protein component of the small (40S) ribosomal subunit; identical to Rps11Ap and has similarity to E. coli S17 and rat S11 ribosomal proteins, Chr II from 332829-332873,333385-333810, Verified ORF
YCL017C	20.249	1.00	7	483.2806	1	YCL017C	NFS1 SGDID:S000000522,Cysteine desulfurase involved in iron-sulfur cluster (Fe\S) biogenesis; required for the post-transcriptional thio-modification of mitochondrial and cytoplasmic tRNAs; essential protein located predominantly in mitochondria, Chr III from 94270-92777, reverse complement, Verified ORF
YGL236C	25.642	0.70	2	76.3275	1	YGL236C	MTO1 SGDID:S000003205,Mitochondrial protein, forms a heterodimer complex with Mss1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; required for respiration in paromomycin-resistant 15S rRNA mutants, Chr VII from 55796-53787, reverse complement, Verified ORF
YMR186W	27.379	1.00	847	43248.4693	1	YMR186W	HSC82 SGDID:S000004798,Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels that HSP82 and induced 2-3 fold by heat shock, Chr XIII from 632354-634471, Verified ORF
YOL132W	15.38	0.88	3	239.9675	1	YOL132W	GAS4 SGDID:S000005492,Putative 1,3-beta-glucanosyltransferase, has similarity to Gas1p; localizes to the cell wall, Chr XV from 71300-72715, Verified ORF
YNL154C	17.848	1.00	13	1018.26	1	YNL154C	YCK2 SGDID:S000005098,Palmitoylated, plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck1p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck1p, Chr XIV from 345278-343638, reverse complement, Verified ORF
YGR209C	8.1	1.00	46	7939.2179	1	YGR209C	TRX2 SGDID:S000003441,Cytoplasmic thioredoxin isoenzyme of the thioredoxin system which protects cells against both oxidative and reductive stress, forms LMA1 complex with Pbi2p, acts as a cofactor for Tsa1p, required for ER-Golgi transport and vacuole inheritance, Chr VII from 913232-912918, reverse complement, Verified ORF
YBL064C	13.52	1.00	18	1861.2329	1	YBL064C	PRX1 SGDID:S000000160,Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity, has a role in reduction of hydroperoxides; induced during respiratory growth and under conditions of oxidative stress, Chr II from 101158-100373, reverse complement, Verified ORF
YNR048W	11.37	0.98	1	120.4954	1	YNR048W	YNR048W SGDID:S000005331,Protein proposed to interact with phospholipid translocases, shares similarity to Cdc50p, Chr XIV from 711632-712813, Verified ORF
YLR002C	27.97	0.96	1	47.9825	1	YLR002C	NOC3 SGDID:S000003992,Protein that forms a nuclear complex with Noc2p that binds to 66S ribosomal precursors to mediate their intranuclear transport; also binds to chromatin to promote the association of DNA replication factors and replication initiation, Chr XII from 156333-154342, reverse complement, Verified ORF
YFL045C	12.697	1.00	108	11891.251	1	YFL045C	SEC53 SGDID:S000001849,Phosphomannomutase, involved in synthesis of GDP-mannose and dolichol-phosphate-mannose; required for folding and glycosylation of secretory proteins in the ER lumen, Chr VI from 44392-43628, reverse complement, Verified ORF
YLL023C	9.05	0.83	1	128.2136	1	YLL023C	YLL023C SGDID:S000003946,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; YLL023C is not an essential gene, Chr XII from 98835-97996, reverse complement, Uncharacterized ORF
YPR091C	46.067	1.00	5	151.7347	1	YPR091C	YPR091C SGDID:S000006295,Hypothetical protein, Chr XVI from 718466-716154, reverse complement, Uncharacterized ORF
YGR204W	37.42	1.00	129	4819.3763	1	YGR204W	ADE3 SGDID:S000003436,Cytoplasmic trifunctional enzyme C1-tetrahydrofolate synthase, involved in single carbon metabolism and required for biosynthesis of purines, thymidylate, methionine, and histidine, Chr VII from 905939-908779, Verified ORF
YKL029C	24.46	1.00	33	1886.0899	1	YKL029C	MAE1 SGDID:S000001512,Mitochondrial malic enzyme, catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids, Chr XI from 384368-382359, reverse complement, Verified ORF
YNL039W	26.4	1.00	28	1482.7195	1	YNL039W	BDP1 SGDID:S000004984,Essential subunit of RNA polymerase III transcription factor (TFIIIB), which is involved in transcription of genes encoding tRNAs, 5S rRNA, U6 snRNA, and other small RNAs, Chr XIV from 555049-556833, Verified ORF
YLR271W	14.59	0.82	4	314.2848	1	YLR271W	YLR271W SGDID:S000004261,Hypothetical protein, Chr XII from 682739-683563, Uncharacterized ORF
YDL149W	34.45	0.85	3	103.4798	1	YDL149W	ATG9 SGDID:S000002308,Transmembrane protein involved in formation of Cvt and autophagic vesicles; cycles between the pre-autophagosomal structure and other cytosolic punctate structures, not found in autophagosomes, Chr IV from 184926-187919, Verified ORF
YNL249C	23.806	0.70	2	82.2141	1	YNL249C	MPA43 SGDID:S000005193,Mitochondrial protein of unknown function, Chr XIV from 181023-179395, reverse complement, Verified ORF
YGR187C	18.837	0.99	19	1395.9889	1	YGR187C	HGH1 SGDID:S000003419,Protein of unknown function with similarity to human HMG1 and HMG2; localizes to the cytoplasm, Chr VII from 871421-870237, reverse complement, Verified ORF
YEL020W-A	3.07	0.89	1	405.2812	1	YEL020W-A	TIM9 SGDID:S000007256,Mitochondrial intermembrane space protein, forms a complex with Mrs11p\Tim10p that mediates import and insertion of a subset of polytopic inner membrane proteins; may prevent aggregation of incoming proteins in a chaperone-like manner, Chr V from 117211-117474, Verified ORF
YKR038C	18.55	0.94	3	212.525	1	YKR038C	KAE1 SGDID:S000001746,Putative glycoprotease that interacts with Bud32p, which is a member of the novel protein kinase piD261 family, Chr XI from 512801-511641, reverse complement, Verified ORF
YJL069C	12.36	0.99	5	559.8757	1	YJL069C	UTP18 SGDID:S000003605,Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data, Chr X from 312623-310839, reverse complement, Uncharacterized ORF
YGL054C	2.808	0.87	3	1299.4163	1	YGL054C	ERV14 SGDID:S000003022,Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of specific secretory cargo; required for the delivery of bud-site selection protein Axl2p to cell surface; related to Drosophila cornichon, Chr VII from 401290-400874, reverse complement, Verified ORF
YER060W	6.49	0.68	1	146.4768	1	YER060W	FCY21 SGDID:S000000862,Putative purine-cytosine permease, very similar to Fcy2p but cannot substitute for its function, Chr V from 274565-276151, Verified ORF
YJR016C	24.86	1.00	284	15970.6329	1	YJR016C	ILV3 SGDID:S000003777,Dihydroxyacid dehydratase, catalyzes third step in the common pathway leading to biosynthesis of branched-chain amino acids, Chr X from 466123-464366, reverse complement, Verified ORF
YLR354C	24.586	1.00	146	8301.7545	1	YLR354C	TAL1 SGDID:S000004346,Transaldolase, enzyme in the non-oxidative pentose phosphate pathway; converts sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate to erythrose 4-phosphate and fructose 6-phosphate, Chr XII from 837356-836349, reverse complement, Verified ORF
YDR176W	35.1	0.99	1	39.4305	1	YDR176W	NGG1 SGDID:S000002583,Transcriptional regulator involved in glucose repression of Gal4p-regulated genes; component of transcriptional adaptor and histone acetyltransferase complexes, the ADA complex, the SAGA complex, and the SLIK complex, Chr IV from 814449-816557, Verified ORF
YGL009C	31.113	1.00	184	8267.6264	1	YGL009C	LEU1 SGDID:S000002977,Isopropylmalate isomerase, catalyzes the second step in the leucine biosynthesis pathway, Chr VII from 478657-476318, reverse complement, Verified ORF
YDR222W	20.28	1.00	5	344.6727	1	YDR222W	YDR222W SGDID:S000002630,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern, Chr IV from 910050-911297, Uncharacterized ORF
YIL008W	2.31	0.98	20	11861.7564	1	YIL008W	URM1 SGDID:S000001270,Ubiquitin-like protein with only weak sequence similarity to ubiquitin; depends on the E1-like activating enzyme Uba4p; molecular function of the Urm1p pathway is unknown, but it is required for normal growth, particularly at high temperature, Chr IX from 342533-342832, Verified ORF
YPR115W	55.828	1.00	7	175.2874	1	YPR115W	YPR115W SGDID:S000006319,Hypothetical protein, Chr XVI from 754875-758126, Uncharacterized ORF
YBL009W	24.436	0.99	5	283.1913	1	YBL009W	YBL009W SGDID:S000000105,haspin, Chr II from 207197-209227, Uncharacterized ORF
YPR162C	28.58	0.72	9	316.9696	1	YPR162C	ORC4 SGDID:S000006366,Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing, Chr XVI from 868300-866711, reverse complement, Verified ORF
YFL013C	38.71	0.99	6	214.5201	1	YFL013C	IES1 SGDID:S000001881,Subunit of the INO80 chromatin remodeling complex, Chr VI from 109924-107846, reverse complement, Verified ORF
YEL026W	3.43	1.00	11	4483.3586	1	YEL026W	SNU13 SGDID:S000000752,RNA binding protein, part of U3 snoRNP involved in rRNA processing, part of U4\U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein, Chr V from 101943-102323, Verified ORF
YDR427W	24.98	1.00	4	223.8579	1	YDR427W	RPN9 SGDID:S000002835,Non-ATPase regulatory subunit of the 26S proteasome, has similarity to putative proteasomal subunits in other species; null mutant is temperature sensitive and exhibits cell cycle and proteasome assembly defects, Chr IV from 1322197-1323378, Verified ORF
YAL023C	21.92	1.00	13	829.1015	1	YAL023C	PMT2 SGDID:S000000021,Protein O-mannosyltransferase, transfers mannose residues from dolichyl phosphate-D-mannose to protein serine\threonine residues; acts in a complex with Pmt1p, can instead interact with Pmt5p in some conditions; target for new antifungals, Chr I from 108552-106273, reverse complement, Verified ORF
YAL025C	10.18	0.92	3	379.0235	1	YAL025C	MAK16 SGDID:S000000023,Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for normal concentration of free 60S ribosomal subunits; required for maintenance of M1 satellite double-stranded RNA of the L-A virus, Chr I from 101146-100226, reverse complement, Verified ORF
YDL107W	18.379	0.88	1	66.9369	1	YDL107W	MSS2 SGDID:S000002265,Peripherally bound inner membrane protein of the mitochondrial matrix, required for export of C-terminal tail of Cox2p through the inner membrane, Chr IV from 268921-269976, Verified ORF
YDL024C	12.96	0.82	3	265.3597	1	YDL024C	DIA3 SGDID:S000002182,Protein of unknown function, involved in invasive and pseudohyphal growth, Chr IV from 409854-408448, reverse complement, Verified ORF
YNL163C	37.54	0.94	1	35.0056	1	YNL163C	RIA1 SGDID:S000005107,Cytoplasmic GTPase involved in biogenesis of the 60S ribosome; has similarity to translation elongation factor 2 (Eft1p and Eft2p), Chr XIV from 330075-326743, reverse complement, Verified ORF
YBR065C	19.878	0.84	6	354.4563	1	YBR065C	ECM2 SGDID:S000000269,Pre-mRNA splicing factor, facilitates the cooperative formation of U2\U6 helix II in association with stem II in the spliceosome, function may be regulated by Slu7p, Chr II from 369676-368582, reverse complement, Verified ORF
YOL148C	22.32	1.00	15	939.5112	1	YOL148C	SPT20 SGDID:S000005508,Subunit of the SAGA transcriptional regulatory complex, involved in maintaining the integrity of the complex, Chr XV from 47573-45759, reverse complement, Verified ORF
YJR069C	9.23	1.00	12	1817.542	1	YJR069C	HAM1 SGDID:S000003830,Protein of unknown function that is involved in DNA repair; mutant is sensitive to the base analog, 6-N-hydroxylaminopurine, while gene disruption does not increase the rate of spontaneous mutagenesis, Chr X from 569314-568721, reverse complement, Verified ORF
YGL157W	15.097	1.00	28	2592.8195	1	YGL157W	YGL157W SGDID:S000003125,Oxidoreductase, catalyzes NADPH-dependent reduction of the bicyclic diketone bicyclo[2.2.2]octane-2,6-dione (BCO2,6D) to the chiral ketoalcohol (1R,4S,6S)-6-hydroxybicyclo[2.2.2]octane-2-one (BCO2one6ol), Chr VII from 209011-210054, Verified ORF
YHR196W	25.568	1.00	6	328.0646	1	YHR196W	UTP9 SGDID:S000001239,Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA, Chr VIII from 491931-493658, Verified ORF
YNL061W	21.16	1.00	7	462.4739	1	YNL061W	NOP2 SGDID:S000005005,Probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; localized to the nucleolus; constituent of 66S pre-ribosomal particles, Chr XIV from 510541-512397, Verified ORF
YDR309C	15.29	0.81	1	74.0597	1	YDR309C	GIC2 SGDID:S000002717,Protein of unknown function involved in initiation of budding and cellular polarization, interacts with Cdc42p via the Cdc42\Rac-interactive binding (CRIB) domain, Chr IV from 1080195-1079044, reverse complement, Verified ORF
YLR249W	45.069	1.00	1019	31608.3026	1	YLR249W	YEF3 SGDID:S000004239,Translational elongation factor, stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes by releasing EF-1 alpha from the ribosomal complex; contains two ABC cassettes; binds and hydrolyses ATP, Chr XII from 636782-639916, Verified ORF
YOR046C	28.799	1.00	48	2330.0687	1	YOR046C	DBP5 SGDID:S000005572,Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family involved in mRNA export from the nucleus, Chr XV from 415908-414460, reverse complement, Verified ORF
YBR263W	20.09	1.00	100	6958.6497	1	YBR263W	SHM1 SGDID:S000000467,Mitochondrial serine hydroxymethyltransferase, involved in one-carbon metabolism, Chr II from 736259-737731, Verified ORF
YBL097W	31.3	0.90	3	120.5936	1	YBL097W	BRN1 SGDID:S000000193,Essential protein required for chromosome condensation, likely to function as an intrinsic component of the condensation machinery, may influence multiple aspects of chromosome transmission and dynamics, Chr II from 40828-43092, Verified ORF
YCR054C	25.86	0.99	2	107.0388	1	YCR054C	CTR86 SGDID:S000000650,Essential protein of unknown function, Chr III from 220063-218372, reverse complement, Verified ORF
YKL152C	16.612	1.00	638	53691.269	1	YKL152C	GPM1 SGDID:S000001635,Tetrameric phosphoglycerate mutase, mediates the conversion of 3-phosphoglycerate to 2-phosphoglycerate during glycolysis and the reverse reaction during gluconeogenesis, Chr XI from 164390-163647, reverse complement, Verified ORF
YBL056W	13.29	0.88	1	92.5683	1	YBL056W	PTC3 SGDID:S000000152,Type 2C protein phosphatase; dephosphorylates Hog1p (see also Ptc2p) to limit maximal kinase activity induced by osmotic stress; dephosphorylates T169 phosphorylated Cdc28p (see also Ptc2p); role in DNA checkpoint inactivation, Chr II from 113765-115171, Verified ORF
YER089C	16.83	1.00	32	2658.0966	1	YER089C	PTC2 SGDID:S000000891,Type 2C protein phosphatase; dephosphorylates Hog1p to limit maximal osmostress induced kinase activity; dephosphorylates Ire1p to downregulate the unfolded protein response; dephosphorylates Cdc28p; role in DNA checkpoint inactivation, Chr V from 337336-335942, reverse complement, Verified ORF
YMR076C	62.7	0.93	10	207.3577	1	YMR076C	PDS5 SGDID:S000004681,Protein required for establishment and maintenance of sister chromatid condensation and cohesion, colocalizes with cohesin on chromosomes in an interdependent manner, may function as a protein-protein interaction scaffold, Chr XIII from 420028-416195, reverse complement, Verified ORF
YOR251C	19.619	0.78	2	111.161	1	YOR251C	YOR251C SGDID:S000005777,catalyzes transfer of the sulfane atom of thiosulfate to cyanide to form sulfite and thiocyanate, Chr XV from 803465-802551, reverse complement, Uncharacterized ORF
YNL236W	41.687	0.98	6	197.1885	1	YNL236W	SIN4 SGDID:S000005180,Subunit of the Mediator complex; interacts with the RNA polymerase II holoenzyme to postively or negatively regulate transcription; dispensible for basal transcription, Chr XIV from 206931-209855, Verified ORF
YOR336W	53.29	0.99	3	77.914	1	YOR336W	KRE5 SGDID:S000005863,Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects, Chr XV from 949770-953867, Verified ORF
YEL003W	5.052	1.00	18	4980.9717	1	YEL003W	GIM4 SGDID:S000000729,Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it, Chr V from 148227-148598, Verified ORF
YGR132C	12.599	1.00	16	1775.3697	1	YGR132C	PHB1 SGDID:S000003364,Subunit of the prohibitin complex (Phb1p-Phb2p), a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation, Chr VII from 756457-755594, reverse complement, Verified ORF
YLR410W	55.809	1.00	9	225.4463	1	YLR410W	VIP1 SGDID:S000004402,Protein of unknown function probably involved in the function of the cortical actin cytoskeleton; putative ortholog of S. pombe asp1+, Chr XII from 937539-940979, Verified ORF
YKR019C	18.76	0.88	2	131.1549	1	YKR019C	IRS4 SGDID:S000001727,Protein involved in regulation of phosphatidylinositol 4,5-bisphosphate concentrations; Irs4p and Tax4p bind and activate the phosphatase Inp51p; mutation confers an increase in rDNA silencing, Chr XI from 477706-475859, reverse complement, Verified ORF
YBR101C	17.55	1.00	13	1035.5501	1	YBR101C	FES1 SGDID:S000000305,Hsp70 (Ssa1p) nucleotide exchange factor, cytosolic homolog of Sil1p, which is the nucleotide exchange factor for BiP (Kar2p) in the endoplasmic reticulum, Chr II from 444687-443815, reverse complement, Verified ORF
YHR007C	20.139	1.00	51	3540.2765	1	YHR007C	ERG11 SGDID:S000001049,Lanosterol 14-alpha-demethylase, catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family, Chr VIII from 121678-120086, reverse complement, Verified ORF
YNL139C	62.678	1.00	16	356.8697	1	YNL139C	RLR1 SGDID:S000005083,Subunit of the THO complex, which is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids, Chr XIV from 365719-360926, reverse complement, Verified ORF
YDR083W	18.558	1.00	40	3013.24	1	YDR083W	RRP8 SGDID:S000002490,Nucleolar protein involved in rRNA processing, pre-rRNA cleavage at site A2; also involved in telomere maintenance; mutation is synthetically lethal with a gar1 mutation, Chr IV from 612070-613248, Verified ORF
YFR009W	35.825	1.00	30	1170.6847	1	YFR009W	GCN20 SGDID:S000001905,Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA, Chr VI from 162482-164740, Verified ORF
YNL313C	38.37	1.00	7	255.0416	1	YNL313C	YNL313C SGDID:S000005257,Protein required for cell viability, Chr XIV from 48021-45307, reverse complement, Uncharacterized ORF
YCR051W	10.95	1.00	22	2808.7525	1	YCR051W	YCR051W SGDID:S000000647,Hypothetical protein, Chr III from 214067-214735, Uncharacterized ORF
YOR267C	19.51	1.00	6	429.9311	1	YOR267C	HRK1 SGDID:S000005793,Protein kinase implicated in activation of the plasma membrane H(+)-ATPase Pma1p in response to glucose metabolism; plays a role in ion homeostasis, Chr XV from 824866-822587, reverse complement, Verified ORF
YLR109W	7.24	1.00	140	27033.0085	1	YLR109W	AHP1 SGDID:S000004099,Thiol-specific peroxiredoxin, reduces hydroperoxides to protect against oxidative damage; function in vivo requires covalent conjugation to Urm1p, Chr XII from 368782-369312, Verified ORF
YFR038W	36.83	1.00	4	151.8319	1	YFR038W	YFR038W SGDID:S000001934,Putative ATPase containing the DEAD\H helicase-related sequence motif; YFR038W is not an essential gene, Chr VI from 229367-231928, Uncharacterized ORF
YKL009W	10.42	1.00	19	2549.123	1	YKL009W	MRT4 SGDID:S000001492,Protein involved in mRNA turnover and ribosome assembly, localizes to the nucleolus, Chr XI from 425885-426595, Verified ORF
YOR091W	16.218	1.00	14	1206.8009	1	YOR091W	YOR091W SGDID:S000005617,Hypothetical protein, Chr XV from 493434-494471, Uncharacterized ORF
YJR121W	26.69	1.00	341	17861.2034	1	YJR121W	ATP2 SGDID:S000003882,Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis, Chr X from 647523-649058, Verified ORF
YOL004W	49.178	0.98	1	27.8586	1	YOL004W	SIN3 SGDID:S000005364,DNA binding subunit of Sin3p-Rpd3p histone deacetylase complex, involved in transcriptional repression of meiosis-specific genes during vegetative growth and silencing; involved in telomere maintenance, Chr XV from 316939-321549, Verified ORF
YKR059W	19.09	1.00	511	37421.3873	2	YKR059W,YJL138C	TIF1 SGDID:S000001767,Translation initiation factor eIF4A, identical to Tif2p; DEA(D\H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G, Chr XI from 554629-555816, Verified ORF
YOR063W	17.795	1.00	386	30324.5402	1	YOR063W	RPL3 SGDID:S000005589,Protein component of the large (60S) ribosomal subunit, has similarity to E. coli L3 and rat L3 ribosomal proteins; involved in the replication and maintenance of killer double stranded RNA virus, Chr XV from 444688-445851, Verified ORF
YAR015W	23.855	1.00	59	3457.6219	1	YAR015W	ADE1 SGDID:S000000070,N-succinyl-5-aminoimidazole-4-carboxamide ribotide (SAICAR) synthetase, required for 'de novo' purine nucleotide biosynthesis; red pigment accumulates in mutant cells deprived of adenine, Chr I from 169370-170290, Verified ORF
YJR060W	13.65	0.99	10	1013.9287	1	YJR060W	CBF1 SGDID:S000003821,Helix-loop-helix protein that binds the motif CACRTG, which is present at several sites including MET gene promoters and centromere DNA element I (CDEI); required for nucleosome positioning at this motif; targets Isw1p to DNA, Chr X from 548674-549729, Verified ORF
YBR205W	19.76	0.71	4	200.926	1	YBR205W	KTR3 SGDID:S000000409,Putative alpha-1,2-mannosyltransferase involved in O- and N-linked protein glycosylation; member of the KRE2\MNT1 mannosyltransferase family, Chr II from 633617-634831, Verified ORF
YHR072W-A	2.39	1.00	12	7019.2103	1	YHR072W-A	NOP10 SGDID:S000007455,Constituent of small nucleolar ribonucleoprotein particles containing H\ACA-type snoRNAs, which are required for pseudouridylation and processing of pre-18S rRNA, Chr VIII from 241666-241842, Verified ORF
YIL017C	34.83	0.87	2	69.8394	1	YIL017C	VID28 SGDID:S000001279,Protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm, Chr IX from 320963-318198, reverse complement, Verified ORF
YML110C	13.17	1.00	10	1061.4978	1	YML110C	COQ5 SGDID:S000004578,2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase, involved in ubiquinone (Coenzyme Q) biosynthesis; located in mitochondria, Chr XIII from 50954-50031, reverse complement, Verified ORF
YIL124W	10.9	0.95	5	609.217	1	YIL124W	AYR1 SGDID:S000001386,NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase found in lipid particles, ER, and mitochondrial outer membrane; involved in phosphatidic acid biosynthesis; required for spore germination; capable of metabolizing steroid hormones, Chr IX from 126204-127097, Verified ORF
YLR305C	61.987	1.00	19	428.5069	1	YLR305C	STT4 SGDID:S000004296,Phosphatidylinositol-4-kinase that functions in the Pkc1p protein kinase pathway; required for normal vacuole morphology, cell wall integrity, and actin cytoskeleton organization, Chr XII from 743865-738163, reverse complement, Verified ORF
YLR216C	14.32	1.00	36	3514.5068	1	YLR216C	CPR6 SGDID:S000004206,Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds to Hsp82p and contributes to chaperone activity, Chr XII from 573213-572098, reverse complement, Verified ORF
YNL132W	49.035	1.00	37	1054.8736	1	YNL132W	KRE33 SGDID:S000005076,Essential protein of unknown function; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance, Chr XIV from 375323-378493, Verified ORF
YMR134W	10.19	0.91	16	1997.5244	1	YMR134W	YMR134W SGDID:S000004741,Protein required for cell viability, Chr XIII from 537837-538550, Uncharacterized ORF
YNL149C	7.81	1.00	5	895.0017	1	YNL149C	YNL149C SGDID:S000005093,Essential protein required for maturation of Gas1p and Pho8p; GFP-fusion protein localizes to the endoplasmic reticulum (ER) and YFP-fusion protein to the nuclear envelope-ER network; null mutants have a cell separation defect, Chr XIV from 349758-349369, reverse complement, Uncharacterized ORF
YGR234W	15.851	1.00	168	14816.906	1	YGR234W	YHB1 SGDID:S000003466,Nitric oxide oxidoreductase, flavohemoglobin involved in nitric oxide detoxification; plays a role in the oxidative and nitrosative stress responses, Chr VII from 959908-961107, Verified ORF
YJL092W	56.589	0.97	11	263.595	1	YJL092W	HPR5 SGDID:S000003628,DNA helicase and DNA-dependent ATPase involved in DNA repair, required for proper timing of commitment to meiotic recombination and the transition from Meiosis I to Meiosis II; potential Cdc28p substrate, Chr X from 257340-260864, Verified ORF
YDR158W	12.31	1.00	34	3861.2309	1	YDR158W	HOM2 SGDID:S000002565,Aspartic beta semi-aldehyde dehydrogenase, catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis, Chr IV from 770354-771451, Verified ORF
YCR004C	9.989	1.00	24	3358.8773	1	YCR004C	YCP4 SGDID:S000000597,Protein of unknown function, has sequence and structural similarity to flavodoxins; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern, Chr III from 120316-119573, reverse complement, Verified ORF
YCR057C	40.63	0.86	4	118.3631	1	YCR057C	PWP2 SGDID:S000000653,Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis, Chr III from 223224-220453, reverse complement, Verified ORF
YDR096W	27.52	1.00	7	355.594	1	YDR096W	GIS1 SGDID:S000002503,Transcriptional factor, involved in the expression of genes during nutrient limitation; also involved in the negative regulation of DPP1 and PHR1, Chr IV from 637136-639820, Verified ORF
YML022W	8.678	1.00	25	4027.4047	1	YML022W	APT1 SGDID:S000004484,Adenine phosphoribosyltransferase, catalyzes the formation of AMP from adenine and 5-phosphoribosylpyrophosphate; involved in the salvage pathway of purine nucleotide biosynthesis, Chr XIII from 228937-229500, Verified ORF
YLR086W	68.34	0.96	4	78.5527	1	YLR086W	SMC4 SGDID:S000004076,Subunit of the condensin complex, which reorganizes chromosomes during cell division, forms a stable complex with Smc2p that has ATP-hydrolyzing and DNA-binding activity and promotes knotting of circular DNA; potential Cdc28p substrate, Chr XII from 302244-306500, Verified ORF
YPR173C	20.796	1.00	15	1008.3617	1	YPR173C	VPS4 SGDID:S000006377,AAA-type ATPase required for efficient late endosome to vacuole transport; catalyzes the release of an endosomal membrane-associated class E VPS protein complex; cytoplasmic protein that is also associated with an endosomal compartment, Chr XVI from 887833-886520, reverse complement, Verified ORF
YDR356W	53.73	0.87	8	181.0911	1	YDR356W	SPC110 SGDID:S000002764,Inner plaque spindle pole body (SPB) component, ortholog of human kendrin; involved in connecting nuclear microtubules to SPB; interacts with Tub4p-complex and calmodulin; phosphorylated by Mps1p in cell cycle-dependent manner, Chr IV from 1186100-1188934, Verified ORF
YOR369C	8.32	1.00	229	38478.4056	1	YOR369C	RPS12 SGDID:S000005896,Protein component of the small (40S) ribosomal subunit; has similarity to rat ribosomal protein S12, Chr XV from 1028623-1028192, reverse complement, Verified ORF
YPR137W	24.32	1.00	9	517.3492	1	YPR137W	RRP9 SGDID:S000006341,Protein involved in pre-rRNA processing, associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein, Chr XVI from 802355-804076, Verified ORF
YAL011W	22.79	0.65	1	39.8725	1	YAL011W	SWC3 SGDID:S000000009,Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae, Chr I from 132202-134079, Verified ORF
YMR021C	11.255	0.83	10	1030.9497	1	YMR021C	MAC1 SGDID:S000004623,Copper-sensing transcription factor involved in regulation of genes required for high affinity copper transport, Chr XIII from 318417-317164, reverse complement, Verified ORF
YHR039C-A	5.79	1.00	19	4587.5409	1	YHR039C-A	VMA10 SGDID:S000002100,Vacuolar H+ ATPase subunit G of the catalytic (V1) sector, involved in vacuolar acidification, Chr VIII from 187672-187670,187507-187166, reverse complement, Verified ORF
YJR014W	6.424	0.99	25	5386.1021	1	YJR014W	YJR014W SGDID:S000003775,Hypothetical protein, Chr X from 461744-462340, Uncharacterized ORF
YJR145C	13.538	1.00	176	18174.525	2	YHR203C,YJR145C	RPS4A SGDID:S000003906,Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; identical to Rps4Bp and has similarity to rat S4 ribosomal protein, Chr X from 702984-702971,702714-701943, reverse complement, Verified ORF
YBL034C	70.976	1.00	11	216.6636	1	YBL034C	STU1 SGDID:S000000130,Component of the mitotic spindle that binds to interpolar microtubules via its association with beta-tubulin (Tub2p); required for interpolar microtubules to provide an outward force on the spindle poles, Chr II from 158392-153851, reverse complement, Verified ORF
YNL067W	8.08	1.00	174	30105.2889	1	YNL067W	RPL9B SGDID:S000005011,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Ap and has similarity to E. coli L6 and rat L9 ribosomal proteins, Chr XIV from 499682-500257, Verified ORF
YPL060W	18.53	0.93	4	280.6547	1	YPL060W	LPE10 SGDID:S000005981,Mitochondrial inner membrane magnesium transporter, involved in maintenance of magnesium concentrations inside mitochondria; indirectly affects splicing of group II introns; functionally and structurally related to Mrs2p, Chr XVI from 434520-435761, Verified ORF
YER087W	30.168	0.94	1	43.5598	1	YER087W	YER087W SGDID:S000000889,Hypothetical protein, Chr V from 330572-332302, Uncharacterized ORF
YHL009W-B	83.1099999999999	1.00	28	470.9878	2	YJL113W,YHL009W-B	YHL009W-B SGDID:S000007372,TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition, Chr VIII from 85905-86990,86992-91314, transposable_element_gene
YNL092W	11.06	0.70	3	265.4416	1	YNL092W	YNL092W SGDID:S000005036,Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family, Chr XIV from 450873-452075, Uncharacterized ORF
YJR110W	24.588	0.83	3	141.5732	1	YJR110W	YMR1 SGDID:S000003871,Phosphatidylinositol 3-phosphate [PI(3)P] phosphatase, regulates the localization and levels of PI(3)P; involved in cytoplasm to vacuole (CVT) transport; has similarity to the conserved myotubularin dual specificity phosphatase family, Chr X from 633531-635597, Verified ORF
YKL033W	39.128	0.88	2	62.8825	1	YKL033W	YKL033W SGDID:S000001516,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YKL033W is an essential gene, Chr XI from 375099-378215, Uncharacterized ORF
YNL106C	47.24	0.99	7	205.0823	1	YNL106C	INP52 SGDID:S000005050,Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in endocytosis; hyperosmotic stress causes translocation to actin patches, Chr XIV from 424497-420946, reverse complement, Verified ORF
YBR025C	17.32	1.00	163	13156.629	1	YBR025C	YBR025C SGDID:S000000229,Hypothetical protein, Chr II from 291865-290681, reverse complement, Uncharacterized ORF
YKL150W	16.62	1.00	15	1261.7262	1	YKL150W	MCR1 SGDID:S000001633,Mitochondrial NADH-cytochrome b5 reductase, involved in ergosterol biosynthesis, Chr XI from 166549-167457, Verified ORF
YOR332W	16.78	1.00	113	9414.3729	1	YOR332W	VMA4 SGDID:S000005859,Subunit E of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane, Chr XV from 943653-944354, Verified ORF
YNL208W	5.13	1.00	11	2997.6452	1	YNL208W	YNL208W SGDID:S000005152,Hypothetical protein, Chr XIV from 254419-255018, Uncharacterized ORF
YER055C	12.66	1.00	79	8723.6513	1	YER055C	HIS1 SGDID:S000000857,ATP phosphoribosyltransferase, a hexameric enzyme, catalyzes the first step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control, Chr V from 265784-264891, reverse complement, Verified ORF
YJR123W	7.84	1.00	357	63658.5974	1	YJR123W	RPS5 SGDID:S000003884,Protein component of the small (40S) ribosomal subunit, the least basic of the non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; has similarity to E. coli S7 and rat S5 ribosomal proteins, Chr X from 651817-652494, Verified ORF
YMR318C	15.815	1.00	42	3712.6585	1	YMR318C	ADH6 SGDID:S000004937,NADPH-dependent cinnamyl alcohol dehydrogenase family member with broad substrate specificity; may be involved in fusel alcohol synthesis or in aldehyde tolerance, Chr XIII from 912141-911059, reverse complement, Verified ORF
YGL078C	22.176	1.00	21	1323.8567	1	YGL078C	DBP3 SGDID:S000003046,Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis, Chr VII from 361862-360291, reverse complement, Verified ORF
YKL104C	30.14	1.00	46	2133.6319	1	YKL104C	GFA1 SGDID:S000001587,Glutamine-fructose-6-phosphate amidotransferase, catalyzes the formation of glucosamine-6-P and glutamate from fructose-6-P and glutamine in the first step of chitin biosynthesis, Chr XI from 245017-242864, reverse complement, Verified ORF
YDR086C	3.87	1.00	19	6863.5301	1	YDR086C	SSS1 SGDID:S000002493,Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p) that forms a channel for passage of secretory proteins through the endoplasmic reticulum membrane, and of the Ssh1p complex (Ssh1p-Sbh2p-Sss1p); interacts with Ost4p and Wbp1p, Chr IV from 617167-616925, reverse complement, Verified ORF
YJR094W-A	2.96	1.00	134	63287.5086	2	YPR043W,YJR094W-A	RPL43B SGDID:S000003855,Protein component of the large (60S) ribosomal subunit, identical to Rpl43Ap and has similarity to rat L37a ribosomal protein, Chr X from 608223-608224,608500-608776, Verified ORF
YKL172W	18.17	1.00	8	615.5168	1	YKL172W	EBP2 SGDID:S000001655,Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly, localizes to the nucleolus; constituent of 66S pre-ribosomal particles, Chr XI from 125764-127047, Verified ORF
YDR293C	53.139	1.00	7	184.1575	1	YDR293C	SSD1 SGDID:S000002701,Protein with a role in maintenance of cellular integrity, interacts with components of the TOR pathway; ssd1 mutant of a clinical S. cerevisiae strain displays elevated virulence, Chr IV from 1049388-1045636, reverse complement, Verified ORF
YNL099C	9	0.95	1	147.5658	1	YNL099C	OCA1 SGDID:S000005043,Putative protein tyrosine phosphatase, required for cell cycle arrest in response to oxidative damage of DNA, Chr XIV from 439285-438569, reverse complement, Verified ORF
YKL201C	47.82	0.99	9	260.4791	1	YKL201C	MNN4 SGDID:S000001684,Putative positive regulator of mannosylphosphate transferase (Mnn6p), involved in mannosylphosphorylation of N-linked oligosaccharides; expression increases in late-logarithmic and stationary growth phases, Chr XI from 67467-63931, reverse complement, Verified ORF
YJL128C	21.97	1.00	10	636.3189	1	YJL128C	PBS2 SGDID:S000003664,MAP kinase kinase that plays a pivotal role in the osmosensing signal-transduction pathway, activated under severe osmotic stress, Chr X from 180022-178016, reverse complement, Verified ORF
YFL047W	27.35	0.74	16	605.2005	1	YFL047W	RGD2 SGDID:S000001847,GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p, Chr VI from 40421-42565, Verified ORF
YJR002W	23.27	1.00	11	660.8474	1	YJR002W	MPP10 SGDID:S000003762,Component of the SSU processome, which is required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability; similar to human Mpp10p, Chr X from 438780-440561, Verified ORF
YKL006W	6.74	1.00	215	44594.7235	2	YHL001W,YKL006W	RPL14A SGDID:S000001489,N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Bp and has similarity to rat L14 ribosomal protein; rpl14a csh5 double null mutant exhibits synthetic slow growth, Chr XI from 431549-431677,432076-432363, Verified ORF
YHR102W	26.68	0.79	10	413.9483	1	YHR102W	KIC1 SGDID:S000001144,Protein kinase of the PAK\Ste20 kinase family, required for cell integrity possibly through regulating 1,6-beta-glucan levels in the wall; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body, Chr VIII from 316575-319817, Verified ORF
YCL057W	40.23	1.00	7	243.25	1	YCL057W	PRD1 SGDID:S000000562,Zinc metalloendopeptidase, found in the cytoplasm and intermembrane space of mitochondria; with Cym1p, involved in degradation of mitochondrial proteins and of presequence peptides cleaved from imported proteins, Chr III from 24768-26906, Verified ORF
YKL067W	9.62	1.00	21	3051.7512	1	YKL067W	YNK1 SGDID:S000001550,Nucleoside diphosphate kinase, catalyzes the transfer of gamma phosphates from nucleoside triphosphates, usually ATP, to nucleoside diphosphates by a mechanism that involves formation of an autophosphorylated enzyme intermediate, Chr XI from 314456-314917, Verified ORF
YDR117C	25.506	0.70	6	230.2034	1	YDR117C	YDR117C SGDID:S000002524,Hypothetical protein, Chr IV from 685640-683943, reverse complement, Uncharacterized ORF
YJL157C	33.01	0.99	5	209.6353	1	YJL157C	FAR1 SGDID:S000003693,Cyclin-dependent kinase inhibitor that mediates cell cycle arrest in response to pheromone; also forms a complex with Cdc24p, Ste4p, and Ste18p that may specify the direction of polarized growth during mating; potential Cdc28p substrate, Chr X from 126246-123754, reverse complement, Verified ORF
YDR097C	63.9	0.98	13	278.7234	1	YDR097C	MSH6 SGDID:S000002504,Protein required for mismatch repair in mitosis and meiosis, forms a complex with Msh2p to repair both single-base + insertion-deletion mispairs; potentially phosphorylated by Cdc28p, Chr IV from 643834-640106, reverse complement, Verified ORF
YER120W	10.88	1.00	55	7067.0588	1	YER120W	SCS2 SGDID:S000000922,Integral ER membrane protein that regulates phospholipid metabolism via an interaction with the FFAT motif of Opi1p, also involved in telomeric silencing, disruption causes inositol auxotrophy above 34 degrees C, VAP homolog, Chr V from 401131-401865, Verified ORF
YGL216W	21.58	0.79	18	921.1981	1	YGL216W	KIP3 SGDID:S000003184,Kinesin-related motor protein involved in mitotic spindle positioning , Chr VII from 84884-87301, Verified ORF
YDR002W	8.14	1.00	63	10819.8454	1	YDR002W	YRB1 SGDID:S000002409,Ran GTpase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1, Chr IV from 453042-453647, Verified ORF
YGL207W	46.389	1.00	30	904.0889	1	YGL207W	SPT16 SGDID:S000003175,Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure, Chr VII from 98973-102080, Verified ORF
YJL066C	14.05	1.00	2	199.0025	1	YJL066C	MPM1 SGDID:S000003602,Mitochondrial membrane protein of unknown function, contains no hydrophobic stretches, Chr X from 314789-314031, reverse complement, Verified ORF
YPL106C	35.074	1.00	520	20726.3562	1	YPL106C	SSE1 SGDID:S000006027,ATPase that is a component of the heat shock protein Hsp90 chaperone complex; binds unfolded proteins; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm, Chr XVI from 352272-350191, reverse complement, Verified ORF
YLR256W	45.96	0.90	8	219.0066	1	YLR256W	HAP1 SGDID:S000004246,Zinc finger transcription factor involved in the complex regulation of gene expression in response to levels of heme and oxygen; the S288C sequence differs from other strain backgrounds due to a Ty1 insertion in the carboxy terminus, Chr XII from 646417-650925, Verified ORF
YER006W	27.733	1.00	54	2722.0858	1	YER006W	NUG1 SGDID:S000000808,GTPase that associates with nuclear 60S pre-ribosomes, required for export of 60S ribosomal subunits from the nucleus, Chr V from 162722-164284, Verified ORF
YPR191W	26.37	1.00	40	2120.5805	1	YPR191W	QCR2 SGDID:S000006395,Subunit 2 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; transcription is regulated by Hap1p, Hap2p\Hap3p, and heme, Chr XVI from 919377-920483, Verified ORF
YIR037W	9.065	0.94	1	144.9656	1	YIR037W	HYR1 SGDID:S000001476,Thiol peroxidase that functions as a hydroperoxide receptor to sense intracellular hydroperoxide levels and transduce a redox signal to the Yap1p transcription factor, Chr IX from 423125-423616, Verified ORF
YMR241W	11.5	1.00	32	3890.0667	1	YMR241W	YHM2 SGDID:S000004854,Mitochondrial DNA-binding protein, component of the mitochondrial nucleoid structure, involved in mtDNA replication and segregation of mitochondrial genomes; member of the mitochondrial carrier protein family, Chr XIII from 751960-752904, Verified ORF
YJL189W	0.69	1.00	49	99277.7445	1	YJL189W	RPL39 SGDID:S000003725,Protein component of the large (60S) ribosomal subunit, has similarity to rat L39 ribosomal protein; required for ribosome biogenesis; exhibits genetic interactions with SIS1 and PAB1, Chr X from 75932-75937,76324-76473, Verified ORF
YER132C	69.55	0.99	12	238.7944	1	YER132C	PMD1 SGDID:S000000934,Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expression; required, with Mds3p, for growth under alkaline conditions, Chr V from 430445-425184, reverse complement, Verified ORF
YJL008C	30.36	1.00	47	2164.2179	1	YJL008C	CCT8 SGDID:S000003545,Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo, Chr X from 421579-419873, reverse complement, Verified ORF
YBR260C	25.978	0.99	3	159.829	1	YBR260C	RGD1 SGDID:S000000464,GTPase-activating protein (RhoGAP) for Rho3p and Rho4p, possibly involved in control of actin cytoskeleton organization, Chr II from 734634-732634, reverse complement, Verified ORF
YBR115C	63.14	1.00	22	487.1054	1	YBR115C	LYS2 SGDID:S000000319,Alpha aminoadipate reductase, catalyzes the reduction of alpha-aminoadipate to alpha-aminoadipate 6-semialdehyde, which is the fifth step in biosynthesis of lysine; activation requires posttranslational phosphopantetheinylation by Lys5p, Chr II from 473920-469742, reverse complement, Verified ORF
YJR041C	47.288	1.00	6	177.3802	1	YJR041C	URB2 SGDID:S000003802,Nucleolar protein required for normal metabolism of the rRNA primary transcript, proposed to be involved in ribosome biogenesis, Chr X from 513678-510154, reverse complement, Verified ORF
YFL003C	39.107	0.99	7	247.7328	1	YFL003C	MSH4 SGDID:S000001891,Protein involved in meiotic recombination, required for normal levels of crossing over, colocalizes with Zip2p to discrete foci on meiotic chromosomes, has homology to bacterial MutS protein, Chr VI from 137152-134516, reverse complement, Verified ORF
YGL056C	16.06	1.00	4	348.1924	1	YGL056C	SDS23 SGDID:S000003024,One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC\cyclosome regulation, Chr VII from 397624-396041, reverse complement, Verified ORF
YOL120C	7.81	1.00	45	8055.0157	2	YOL120C,YNL301C	RPL18A SGDID:S000005480,Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to rat L18 ribosomal protein; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation, Chr XV from 94402-94291,93843-93395, reverse complement, Verified ORF
YPR029C	34.489	1.00	22	891.7579	1	YPR029C	APL4 SGDID:S000006233,Gamma-adaptin, large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in vesicle mediated transport, Chr XVI from 626964-624466, reverse complement, Verified ORF
YLR065C	4.58	0.98	1	299.1338	1	YLR065C	YLR065C SGDID:S000004055,Putative protein of unknown function; YLR065C is not an essential gene, Chr XII from 266919-266374, reverse complement, Uncharacterized ORF
YPL134C	12.68	0.78	1	85.9963	1	YPL134C	ODC1 SGDID:S000006055,Mitochondrial inner membrane transporter, exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for use in lysine and glutamate biosynthesis and in lysine catabolism, Chr XVI from 299502-298570, reverse complement, Verified ORF
YDR011W	45.37	1.00	6	184.8789	1	YDR011W	SNQ2 SGDID:S000002418,ABC transporter protein involved in multidrug resistance and resistance to singlet oxygen species, Chr IV from 465916-470421, Verified ORF
YHR165C	95.9370000000001	0.99	7	100.9838	1	YHR165C	PRP8 SGDID:S000001208,Component of the U4\U6-U5 snRNP complex, involved in the second catalytic step of splicing, Chr VIII from 436950-429709, reverse complement, Verified ORF
YER078C	17.666	0.99	7	548.4031	1	YER078C	YER078C SGDID:S000000880,Metallopeptidase, localized to the mitochondrial matrix, Chr V from 318338-316803, reverse complement, Uncharacterized ORF
YPL270W	32.64	0.88	10	376.9098	1	YPL270W	MDL2 SGDID:S000006191,Half-type ATP-binding cassette (ABC) transporter of the inner mitochondrial membrane, Chr XVI from 30482-32803, Verified ORF
YNL062C	15.078	0.96	3	267.026	1	YNL062C	GCD10 SGDID:S000005006,Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p, required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression, Chr XIV from 510213-508777, reverse complement, Verified ORF
YLR129W	46.192	0.74	1	22.3959	1	YLR129W	DIP2 SGDID:S000004119,Nucleolar protein, specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex, Chr XII from 399658-402489, Verified ORF
YML001W	10.706	1.00	12	1566.9636	1	YML001W	YPT7 SGDID:S000004460,GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion, similar to mammalian Rab7, Chr XIII from 267174-267800, Verified ORF
YKL185W	21.64	0.88	3	170.5499	1	YKL185W	ASH1 SGDID:S000001668,Zinc-finger inhibitor of HO transcription; mRNA is localized and translated in the distal tip of anaphase cells, resulting in accumulation of Ash1p in daughter cell nuclei and inhibition of HO expression; potential Cdc28p substrate, Chr XI from 94504-96270, Verified ORF
YOR272W	16.87	0.91	2	150.8207	1	YOR272W	YTM1 SGDID:S000005798,Constituent of 66S pre-ribosomal particles, required for maturation of the large ribosomal subunit, Chr XV from 832812-834194, Verified ORF
YML106W	12.75	1.00	36	3947.2735	1	YML106W	URA5 SGDID:S000004574,One of two orotate phosphoribosyltransferase isozymes (see also URA10) that catalyze the fifth enzymatic step in de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate, Chr XIII from 56773-57453, Verified ORF
YOL040C	3.93	1.00	116	41263.9075	1	YOL040C	RPS15 SGDID:S000005400,Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S19 and rat S15 ribosomal proteins, Chr XV from 253576-253148, reverse complement, Verified ORF
YBR078W	7.89	0.99	12	2104.9624	1	YBR078W	ECM33 SGDID:S000000282,GPI-anchored protein of unknown function, has a possible role in apical bud growth; GPI-anchoring on the plasma membrane crucial to function; similar to Sps2p and Pst1p, Chr II from 393118-393175,393506-394854, Verified ORF
YOR261C	17.3	1.00	36	2909.1178	1	YOR261C	RPN8 SGDID:S000005787,Essential, non-ATPase regulatory subunit of the 26S proteasome; has similarity to the human p40 proteasomal subunit and to another S. cerevisiae regulatory subunit, Rpn11p, Chr XV from 816931-815915, reverse complement, Verified ORF
YHR012W	9.99	0.94	1	131.5428	1	YHR012W	VPS29 SGDID:S000001054,Endosomal protein that is a subunit of the membrane-associated retromer complex essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval, Chr VIII from 129475-129522,129642-130442, Verified ORF
YDR261C	24.98	0.96	17	913.3403	1	YDR261C	EXG2 SGDID:S000002669,Exo-1,3-beta-glucanase, involved in cell wall beta-glucan assembly; may be anchored to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor, Chr IV from 979205-977517, reverse complement, Verified ORF
YLR367W	7.98	1.00	185	32409.6058	2	YJL190C,YLR367W	RPS22B SGDID:S000004359,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Ap and has similarity to E. coli S8 and rat S15a ribosomal proteins, Chr XII from 856441-856573,857057-857316, Verified ORF
YDL046W	4.11	0.91	1	309.5312	1	YDL046W	NPC2 SGDID:S000002204,Functional homolog of human NPC2\He1, which is a cholesterol-binding protein whose deficiency causes Niemann-Pick type C2 disease involving retention of cholesterol in lysosomes, Chr IV from 371237-371758, Verified ORF
YER125W	35.6	1.00	16	628.3113	1	YER125W	RSP5 SGDID:S000000927,Ubiquitin-protein ligase involved in ubiquitin-mediated protein degradation; plays a role in heat shock element (HSE)-mediated gene expression and multivesicular body sorting; contains a hect (homologous to E6-AP carboxyl terminus) domain, Chr V from 410185-412614, Verified ORF
YCL061C	49.33	0.92	4	104.2897	1	YCL061C	MRC1 SGDID:S000000566,S-phase checkpoint protein found at replication forks, required for DNA replication; also required for Rad53p activation during DNA replication stress, where it forms a replication-pausing complex with Tof1p and is phosphorylated by Mec1p; protein involved in replication checkpoint, Chr III from 22106-18816, reverse complement, Verified ORF
YFL022C	22.749	1.00	134	8234.6927	1	YFL022C	FRS2 SGDID:S000001872,Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase, forms a tetramer with Frs1p to form active enzyme; evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase based on protein sequence, but substrate binding is similar, Chr VI from 95008-93497, reverse complement, Verified ORF
YDR517W	9.9	0.95	1	134.1508	1	YDR517W	GRH1 SGDID:S000002925,Protein involved in the spindle assembly checkpoint; homolog of human GRASP65, which is a Golgi localized protein that functions in postmitotic reassembly of Golgi stacks, Chr IV from 1477231-1478349, Uncharacterized ORF
YAL001C	60.235	1.00	5	116.0448	1	YAL001C	TFC3 SGDID:S000000001,Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauB domain of TFIIIC that binds DNA at the BoxB promoter sites of tRNA and similar genes; cooperates with Tfc6p in DNA binding, Chr I from 151168-151099,151008-147596, reverse complement, Verified ORF
YIL033C	22.29	1.00	9	564.4654	1	YIL033C	BCY1 SGDID:S000001295,Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA), a component of a signaling pathway that controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation, Chr IX from 291668-290418, reverse complement, Verified ORF
YLL018C	27.28	1.00	210	10761.6742	1	YLL018C	DPS1 SGDID:S000003941,Cytoplasmic aspartyl-tRNA synthetase, homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp); class II aminoacyl tRNA synthetase; binding to its own mRNA may confer autoregulation, Chr XII from 111574-109901, reverse complement, Verified ORF
YIL001W	20.875	0.96	11	707.2001	1	YIL001W	YIL001W SGDID:S000001263,Hypothetical protein, Chr IX from 353937-355478, Uncharacterized ORF
YJR132W	29.36	1.00	10	476.1555	1	YJR132W	NMD5 SGDID:S000003893,Karyopherin, a carrier protein involved in nuclear import of proteins; importin beta homolog, Chr X from 669438-672584, Verified ORF
YKL127W	25.254	1.00	15	830.3591	1	YKL127W	PGM1 SGDID:S000001610,Phosphoglucomutase, minor isoform; catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism, Chr XI from 203185-204897, Verified ORF
YJR147W	10.41	0.82	1	110.1204	1	YJR147W	HMS2 SGDID:S000003908,Protein with similarity to heat shock transcription factors; overexpression suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant, Chr X from 704112-705188, Verified ORF
YER021W	22.678	1.00	13	801.3892	1	YER021W	RPN3 SGDID:S000000823,Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to the p58 subunit of the human 26S proteasome; temperature-sensitive alleles cause metaphase arrest, suggesting a role for the proteasome in cell cycle control, Chr V from 196947-198518, Verified ORF
YDR382W	9.17	1.00	276	42076.9894	1	YDR382W	RPP2B SGDID:S000002790,Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm, Chr IV from 1239484-1239816, Verified ORF
YKL014C	82.289	1.00	9	152.8993	1	YKL014C	URB1 SGDID:S000001497,Nucleolar protein required for the normal accumulation of 25S and 5.8S rRNAs, associated with the 27SA2 pre-ribosomal particle; proposed to be involved in the biogenesis of the 60S ribosomal subunit, Chr XI from 416556-411262, reverse complement, Verified ORF
YML014W	11.14	0.96	13	1566.1534	1	YML014W	TRM9 SGDID:S000004476,tRNA methyltransferase, catalyzes the esterification of modified uridine nucleotides in tRNAs, creating 5-methylcarbonylmethyluridine in tRNA(Arg3) and 5-methylcarbonylmethyl-2-thiouridine in tRNA(Glu); may have a role in stress response, Chr XIII from 243225-244064, Verified ORF
YNL102W	65.528	0.99	7	147.8465	1	YNL102W	POL1 SGDID:S000005046,Catalytic subunit of the DNA polymerase alpha-primase complex, required for the initiation of DNA replication during mitotic DNA synthesis and premeiotic DNA synthesis, Chr XIV from 430089-434495, Verified ORF
YDR409W	39.28	0.97	16	552.3637	1	YDR409W	SIZ1 SGDID:S000002817,SUMO ligase that promotes the attachment of sumo (Smt3p; small ubiquitin-related modifier) to proteins; binds Ubc9p and may bind septins; specifically required for sumoylation of septins in vivo; localized to the septin ring, Chr IV from 1289398-1292112, Verified ORF
YDR365C	35.168	1.00	8	318.0147	1	YDR365C	ESF1 SGDID:S000002773,Nucleolar protein involved in pre-rRNA processing; depletion causes severely decreased 18S rRNA levels, Chr IV from 1206375-1204489, reverse complement, Verified ORF
YMR272C	11.03	1.00	6	760.4674	1	YMR272C	SCS7 SGDID:S000004885,Sphingolipid alpha-hydroxylase, functions in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids, has both cytochrome b5-like and hydroxylase\desaturase domains, not essential for growth, Chr XIII from 810776-809622, reverse complement, Verified ORF
YIR036C	14.37	1.00	4	389.142	1	YIR036C	YIR036C SGDID:S000001475,Putative protein of unknown function; sequence similarity with short-chain dehydrogenase\reductase family members; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YIR036C is a non-essential gene, Chr IX from 422862-422071, reverse complement, Uncharacterized ORF
YJL039C	63.749	0.99	10	217.1034	1	YJL039C	NUP192 SGDID:S000003576,Essential structural subunit of the nuclear pore complex (NPC), localizes to the nuclear periphery of nuclear pores, homologous to human p205, Chr X from 373716-368665, reverse complement, Verified ORF
YPR024W	37.688	0.90	4	133.5378	1	YPR024W	YME1 SGDID:S000006228,Subunit, with Mgr1p, of the mitochondrial inner membrane i-AAA protease complex, which is responsible for degradation of unfolded or misfolded mitochondrial gene products; mutation causes an elevated rate of mitochondrial turnover, Chr XVI from 610478-612721, Verified ORF
YKL143W	13.45	0.97	4	403.2871	1	YKL143W	LTV1 SGDID:S000001626,Protein required for growth at low temperature, Chr XI from 176786-178177, Verified ORF
YKR103W	44.98	0.99	6	184.617	1	YKR103W	NFT1 SGDID:S000001811,Putative transporter of the multidrug resistance-associated protein (MRP) subfamily; adjacent ORFs YKR103W and YKR104W are merged in different strain backgrounds., Chr XI from 652718-656374, Verified ORF
YDL205C	13.96	0.82	1	82.117	1	YDL205C	HEM3 SGDID:S000002364,Phorphobilinogen deaminase, catalyzes the conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; expression is regulated by Hap2p-Hap3p, Chr IV from 93746-92763, reverse complement, Verified ORF
YLR259C	29.358	1.00	312	14857.0655	1	YLR259C	HSP60 SGDID:S000004249,Tetradecameric mitochondrial chaperonin required for ATP-dependent folding of precursor polypeptides and complex assembly; prevents aggregation and mediates protein refolding after heat shock; role in mtDNA transmission; similarity to groEL, Chr XII from 665004-663286, reverse complement, Verified ORF
YDL081C	2.74	1.00	50	25510.8162	1	YDL081C	RPP1A SGDID:S000002239,Ribosomal protein P1 alpha, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; accumulation of P1 in the cytoplasm is regulated by phosphorylation and interaction with the P2 stalk component, Chr IV from 310122-309802, reverse complement, Verified ORF
YKL073W	37.5	1.00	15	559.197	1	YKL073W	LHS1 SGDID:S000001556,Molecular chaperone of the endoplasmic reticulum lumen, involved in polypeptide translocation and folding; member of the Hsp70 family; localizes to the lumen of the ER; regulated by the unfolded protein response pathway, Chr XI from 296074-298719, Verified ORF
YDL154W	34.616	0.98	11	435.3582	1	YDL154W	MSH5 SGDID:S000002313,Protein of the MutS family, forms a dimer with Msh4p that facilitates crossovers between homologs during meiosis; msh5-Y823H mutation confers tolerance to DNA alkylating agents; homologs present in C. elegans and humans, Chr IV from 178335-181040, Verified ORF
YGL144C	25.68	0.85	2	92.5462	1	YGL144C	ROG1 SGDID:S000003112,Protein with putative serine active lipase domain, Chr VII from 234512-232455, reverse complement, Verified ORF
YDR496C	22.09	1.00	6	379.7173	1	YDR496C	PUF6 SGDID:S000002904,Pumilio-homology domain protein that binds ASH1 mRNA at PUF consensus sequences in the 3' UTR and represses its translation, resulting in proper asymmetric localization of ASH1 mRNA, Chr IV from 1443395-1441425, reverse complement, Verified ORF
YBR088C	15.27	1.00	55	5035.3372	1	YBR088C	POL30 SGDID:S000000292,Proliferating cell nuclear antigen (PCNA), functions as the sliding clamp for DNA polymerase delta; may function as a docking site for other proteins required for mitotic and meiotic chromosomal DNA replication and for DNA repair, Chr II from 425760-424984, reverse complement, Verified ORF
YDR390C	26.03	0.72	2	77.338	1	YDR390C	UBA2 SGDID:S000002798,Nuclear protein that acts as a heterodimer with Aos1p to activate Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability, Chr IV from 1256839-1254929, reverse complement, Verified ORF
YFL042C	29.1	1.00	13	624.5328	1	YFL042C	YFL042C SGDID:S000001852,Putative protein of unknown function; YFL042C is not an essential gene, Chr VI from 47744-45720, reverse complement, Uncharacterized ORF
YFR006W	23.532	1.00	5	297.0407	1	YFR006W	YFR006W SGDID:S000001902,Putative X-Pro aminopeptidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YFR006W is not an essential gene, Chr VI from 156139-157746, Uncharacterized ORF
YBL036C	14.678	1.00	20	1904.8817	1	YBL036C	YBL036C SGDID:S000000132,Single-domain racemase, possibly non-specific due to the lack of the second domain, which presumably determines specificity, Chr II from 151223-150450, reverse complement, Verified ORF
YGL202W	20.27	1.00	91	6276.139	1	YGL202W	ARO8 SGDID:S000003170,Aromatic aminotransferase, expression is regulated by general control of amino acid biosynthesis, Chr VII from 116063-117565, Verified ORF
YOL147C	9.28	0.99	19	2833.6468	1	YOL147C	PEX11 SGDID:S000005507,Peroxisomal membrane protein required for peroxisome proliferation and medium-chain fatty acid oxidation, most abundant protein in the peroxisomal membrane, regulated by Adr1p and Pip2p-Oaf1p, promoter contains ORE and UAS1-like elements, Chr XV from 48642-47932, reverse complement, Verified ORF
YCL040W	20.229	1.00	40	2764.3338	1	YCL040W	GLK1 SGDID:S000000545,Glucokinase, catalyzes the phosphorylation of glucose at C6 in the first irreversible step of glucose metabolism; one of three glucose phosphorylating enzymes; expression regulated by non-fermentable carbon sources, Chr III from 50838-52340, Verified ORF
YDL146W	22.68	0.97	1	59.7906	1	YDL146W	LDB17 SGDID:S000002305,Protein of unknown function; GFP-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; null mutant shows a reduced affinity for the alcian blue dye suggesting a decreased net negative charge of the cell surface, Chr IV from 192751-194226, Verified ORF
YPL145C	18.524	1.00	61	4603.6253	1	YPL145C	KES1 SGDID:S000006066,Member of the oxysterol binding protein family, which includes seven yeast homologs; involved in negative regulation of Sec14p-dependent Golgi complex secretory functions, peripheral membrane protein that localizes to the Golgi complex, Chr XVI from 279698-278394, reverse complement, Verified ORF
YER073W	25.665	1.00	39	2124.3606	1	YER073W	ALD5 SGDID:S000000875,Mitochondrial aldehyde dehydrogenase, involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed, Chr V from 304027-305589, Verified ORF
YHR042W	31.278	1.00	36	1609.0459	1	YHR042W	NCP1 SGDID:S000001084,NADP-cytochrome P450 reductase; involved in ergosterol biosynthesis; associated and coordinately regulated with Erg11p, Chr VIII from 190536-192611, Verified ORF
YPL158C	25.22	0.98	21	1140.7886	1	YPL158C	YPL158C SGDID:S000006079,Hypothetical protein, Chr XVI from 254309-252033, reverse complement, Uncharacterized ORF
YJR007W	15.919	1.00	50	4390.9564	1	YJR007W	SUI2 SGDID:S000003767,Alpha subunit of the translation initiation factor eIF2, involved in the identification of the start codon; phosphorylation of Ser51 is required for regulation of translation by inhibiting the exchange of GDP for GTP, Chr X from 450935-451849, Verified ORF
YNL069C	12.92	1.00	176	19043.8637	1	YNL069C	RPL16B SGDID:S000005013,N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p, Chr XIV from 495002-494975,494525-493957, reverse complement, Verified ORF
YMR189W	31.31	1.00	5	223.2501	1	YMR189W	GCV2 SGDID:S000004801,P subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm, Chr XIII from 637499-640603, Verified ORF
YKL105C	49.007	0.65	8	148.3372	1	YKL105C	YKL105C SGDID:S000001588,Putative protein of unknown function, Chr XI from 242227-238829, reverse complement, Uncharacterized ORF
YOR137C	20.086	0.72	6	300.6735	1	YOR137C	SIA1 SGDID:S000005663,Protein of unassigned function involved in activation of the Pma1p plasma membrane H+-ATPase by glucose, Chr XV from 583682-581814, reverse complement, Verified ORF
YPL163C	1.97	0.92	1	652.8697	1	YPL163C	SVS1 SGDID:S000006084,Cell wall and vacuolar protein, required for wild-type resistance to vanadate, Chr XVI from 242699-241917, reverse complement, Verified ORF
YMR047C	18.71	0.99	2	147.9436	1	YMR047C	NUP116 SGDID:S000004650,Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a repetitive GLFG motif that interacts with mRNA export factor Mex67p and with karyopherin Kap95p; homologous to Nup100p, Chr XIII from 366704-363363, reverse complement, Verified ORF
YOR161W-A	0.48	0.90	28	73394.6182	1	YOR161W-A	YOR161W-A SGDID:S000028713,Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching, Chr XV from 637575-637655, Dubious ORF
YER131W	3.53	1.00	39	15445.2454	2	YGL189C,YER131W	RPS26B SGDID:S000000933,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps26Ap and has similarity to rat S26 ribosomal protein, Chr V from 423948-424307, Verified ORF
YPL036W	20.82	0.92	3	185.3246	1	YPL036W	PMA2 SGDID:S000005957,Plasma membrane H+-ATPase, isoform of Pma1p, involved in pumping protons out of the cell; regulator of cytoplasmic pH and plasma membrane potential, Chr XVI from 482841-485684, Verified ORF
YCL010C	13.92	0.82	1	82.353	1	YCL010C	SGF29 SGDID:S000000516,SaGa associated Factor 29kDa; Probable 29kKDa Subunit of SAGA histone acetyltransferase complex, Chr III from 104350-103571, reverse complement, Verified ORF
YNL293W	26.164	1.00	13	694.6149	1	YNL293W	MSB3 SGDID:S000005237,GTPase-activating protein for Sec4p and several other Rab GTPases, regulates exocytosis via its action on Sec4p, also required for proper actin organization; similar to Msb4p; both Msb3p and Msb4p localize to sites of polarized growth, Chr XIV from 80640-82541, Verified ORF
YDR172W	24.607	1.00	39	2215.6994	1	YDR172W	SUP35 SGDID:S000002579,Translation termination factor eRF3; altered protein conformation creates the [PSI(+)] prion, a dominant cytoplasmically inherited protein aggregate that alters translational fidelity and creates a nonsense suppressor phenotype, Chr IV from 808321-810378, Verified ORF
YJR024C	10.327	0.95	2	257.2079	1	YJR024C	YJR024C SGDID:S000003785,Putative protein of unknown function; localizes to the cytoplasm; potential substrate of Smt3p sumoylation; expression downregulated by the antifungal drug caspofungin and deletion mutant exhibits enhanced caspofungin resistance, Chr X from 470879-470145, reverse complement, Uncharacterized ORF
YBR042C	16.17	0.98	27	2287.6244	1	YBR042C	YBR042C SGDID:S000000246,Hypothetical protein, Chr II from 321609-320416, reverse complement, Uncharacterized ORF
YNL085W	36.149	1.00	3	116.0192	1	YNL085W	MKT1 SGDID:S000005029,Protein that forms a complex with Pbp1p that may mediate posttranscriptional regulation of HO endonuclease; involved in propagation of M2 dsRNA satellite of L-A virus, Chr XIV from 467133-469625, Verified ORF
YNR046W	3	0.67	8	2497.747	1	YNR046W	TRM112 SGDID:S000005329,Subunit of an adoMet-dependent tRNA methyltransferase (MTase) complex (Trm11p-Trm112p), required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; putative zinc binding subunit of other MTase-related proteins, Chr XIV from 707790-708197, Verified ORF
YML069W	21.188	0.99	3	195.9617	1	YML069W	POB3 SGDID:S000004534,Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), which facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure, Chr XIII from 135500-137158, Verified ORF
YML125C	14.869	1.00	4	376.0825	1	YML125C	YML125C SGDID:S000004594,Essential protein required for maturation of Gas1p and Pho8p; GFP-fusion protein localizes to the endoplasmic reticulum; null mutants have a cell separation defect, Chr XIII from 21700-20762, reverse complement, Uncharacterized ORF
YOL057W	33.438	1.00	11	459.8935	1	YOL057W	YOL057W SGDID:S000005418,Putative metalloprotease, Chr XV from 220766-222901, Uncharacterized ORF
YKL145W	26.59	1.00	16	841.2141	1	YKL145W	RPT1 SGDID:S000001628,One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for optimal CDC20 transcription; interacts with Rpn12p and the E3 ubiquitin-protein ligase Ubr1p, Chr XI from 174218-175621, Verified ORF
YLR314C	26.84	1.00	11	572.9478	1	YLR314C	CDC3 SGDID:S000004306,Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM, Chr XII from 764137-762575, reverse complement, Verified ORF
YFR030W	50.388	1.00	7	194.2118	1	YFR030W	MET10 SGDID:S000001926,Subunit alpha of assimilatory sulfite reductase, which is responsible for the conversion of sulfite into sulfide, Chr VI from 213300-216407, Verified ORF
YNL287W	38.12	1.00	49	1797	1	YNL287W	SEC21 SGDID:S000005231,Gamma subunit of coatomer, a heptameric protein complex that together with Arf1p forms the COPI coat; involved in  ER to Golgi transport of selective cargo, Chr XIV from 91994-94801, Verified ORF
YGR103W	27.188	1.00	16	822.7116	1	YGR103W	NOP7 SGDID:S000003335,Nucleolar protein involved in rRNA processing and 60S ribosomal subunit biogenesis; constituent of several different pre-ribosomal particles, Chr VII from 695421-697238, Verified ORF
YDL126C	39.53	1.00	275	9725.4743	1	YDL126C	CDC48 SGDID:S000002284,ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p and Ufd1p participates in retrotranslocation of ubiquitinated proteins from the ER into the cytosol for degradation by the proteasome, Chr IV from 238664-236157, reverse complement, Verified ORF
YLR061W	4.41	1.00	89	28213.4586	1	YLR061W	RPL22A SGDID:S000004051,Protein component of the large (60S) ribosomal subunit, has similarity to Rpl22Bp and to rat L22 ribosomal protein, Chr XII from 263195-263206,263596-263949, Verified ORF
YJL005W	88.4140000000001	1.00	15	237.1783	1	YJL005W	CYR1 SGDID:S000003542,Adenylate cyclase, required for cAMP production and cAMP-dependent protein kinase signaling; involved in cell cycle control and glucose and nitrogen repression of sporulation, Chr X from 425073-431153, Verified ORF
YDR103W	34.098	0.84	4	137.7575	1	YDR103W	STE5 SGDID:S000002510,Scaffold protein that, in response to pheromone, shuttles from the nucleus to the plasma membrane and assembles kinases Ste11p, Ste7p, and Fus3p into a specific signaling complex; active oligomeric form interacts with Ste4p-Ste18p complex, Chr IV from 658347-661100, Verified ORF
YOR362C	11.198	1.00	31	3870.1352	1	YOR362C	PRE10 SGDID:S000005889,20S proteasome alpha-type subunit, Chr XV from 1018744-1017878, reverse complement, Verified ORF
YBR162C	6.28	0.99	1	220.3842	1	YBR162C	TOS1 SGDID:S000000366,Covalently-bound cell wall protein of unknown function; identified as a cell cycle regulated SBF target gene; deletion mutants are highly resistant to treatment with beta-1,3-glucanase; has sequence similarity to YJL171C, Chr II from 564565-563198, reverse complement, Uncharacterized ORF
YJR006W	21.51	1.00	8	519.9415	1	YJR006W	HYS2 SGDID:S000003766,DNA polymerase III (delta) subunit, essential for cell viability; involved in DNA replication and DNA repair, Chr X from 449117-450580, Verified ORF
YMR276W	8.5	1.00	19	3124.9249	1	YMR276W	DSK2 SGDID:S000004889,Nuclear-enriched ubiquitin-like polyubiquitin-binding protein, required for spindle pole body (SPB) duplication and for transit through the G2\M phase of the cell cycle, involved in proteolysis, interacts with the proteasome, Chr XIII from 818826-819947, Verified ORF
YJL115W	7.42	0.97	2	365.5129	1	YJL115W	ASF1 SGDID:S000003651,Nucleosome assembly factor, involved in chromatin assembly after DNA replication, anti-silencing protein that causes derepression of silent loci when overexpressed, Chr X from 196207-197046, Verified ORF
YLR044C	25.748	1.00	1530	83071.6511	1	YLR044C	PDC1 SGDID:S000004034,Major of three pyruvate decarboxylase isozymes, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde; subject to glucose-, ethanol-, and autoregulation; involved in amino acid catabolism, Chr XII from 234082-232391, reverse complement, Verified ORF
YGR251W	10.496	0.85	3	339.6419	1	YGR251W	YGR251W SGDID:S000003483,Putative protein of unknown function; deletion mutant has defects in pre-rRNA processing; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the nucleolus; YGR251W is an essential gene, Chr VII from 995644-996234, Uncharacterized ORF
YBL030C	14.86	1.00	85	7996.5936	1	YBL030C	PET9 SGDID:S000000126,Major ADP\ATP carrier of the mitochondrial inner membrane, exchanges cytosolic ADP for mitochondrially synthesized ATP; required for viability in many common lab strains carrying a mutation in the polymorphic SAL1 gene, Chr II from 164000-163044, reverse complement, Verified ORF
YLR276C	29.965	1.00	76	3545.7182	1	YLR276C	DBP9 SGDID:S000004266,ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 60S ribosomal subunit, Chr XII from 696832-695048, reverse complement, Verified ORF
YJL099W	28.36	0.99	7	341.611	1	YJL099W	CHS6 SGDID:S000003635,Protein of unknown function, involved in chitin biosynthesis by regulating Chs3p localization, Chr X from 239332-241572, Verified ORF
YOR217W	38.716	1.00	8	288.8713	1	YOR217W	RFC1 SGDID:S000005743,Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon, Chr XV from 749302-751887, Verified ORF
YGR065C	13.48	0.75	3	233.3444	1	YGR065C	VHT1 SGDID:S000003297,High-affinity plasma membrane H+-biotin (vitamin H) symporter; mutation results in fatty acid auxotrophy; 12 transmembrane domain containing major facilitator subfamily member; mRNA levels negatively regulated by iron deprivation and biotin, Chr VII from 619862-618081, reverse complement, Verified ORF
YLR422W	78.593	0.98	7	122.0239	1	YLR422W	YLR422W SGDID:S000004414,Hypothetical protein, Chr XII from 965894-971692, Uncharacterized ORF
YGR061C	47.15	1.00	160	4743.9838	1	YGR061C	ADE6 SGDID:S000003293,Formylglycinamidine-ribonucleotide (FGAM)-synthetase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway, Chr VII from 615969-611893, reverse complement, Verified ORF
YBR049C	29.28	1.00	50	2387.2826	1	YBR049C	REB1 SGDID:S000000253,RNA polymerase I enhancer binding protein; DNA binding protein which binds to genes transcribed by both RNA polymerase I and RNA polymerase II; required for termination of RNA polymerase I transcription, Chr II from 336816-334384, reverse complement, Verified ORF
YFR010W	25.94	1.00	19	1023.973	1	YFR010W	UBP6 SGDID:S000001906,Ubiquitin-specific protease situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; deletion causes hypersensitivity to cycloheximide and other toxic compounds, Chr VI from 165060-166559, Verified ORF
YML124C	13.23	1.00	13	1373.689	1	YML124C	TUB3 SGDID:S000004593,Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p, Chr XIII from 23684-23660,23361-22049, reverse complement, Verified ORF
YBR111C	6.54	0.96	1	205.2099	1	YBR111C	YSA1 SGDID:S000000315,Nudix hydrolase family member with ADP-ribose pyrophosphatase activity, Chr II from 461867-461172, reverse complement, Verified ORF
YJR097W	6.058	0.95	1	219.2296	1	YJR097W	JJJ3 SGDID:S000003858,Protein of unknown function, contains a J-domain, which is a region with homology to the E. coli DnaJ protein, Chr X from 612331-612849, Verified ORF
YDL178W	21.835	0.98	9	564.7032	1	YDL178W	DLD2 SGDID:S000002337,D-lactate dehydrogenase, located in the mitochondrial matrix, Chr IV from 139523-141115, Verified ORF
YOR374W	29.009	1.00	55	2650.5429	1	YOR374W	ALD4 SGDID:S000005901,Mitochondrial aldehyde dehydrogenase, required for growth on ethanol and conversion of acetaldehyde to acetate; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed, Chr XV from 1039838-1041397, Verified ORF
YKR028W	43.857	0.98	3	93.7159	1	YKR028W	SAP190 SGDID:S000001736,Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p, Chr XI from 493900-497196, Verified ORF
YIR021W	19.039	0.69	4	202.6608	1	YIR021W	MRS1 SGDID:S000001460,Protein required for the splicing of two mitochondrial group I introns (BI3 in COB and AI5beta in COX1); forms a splicing complex, containing four subunits of Mrs1p and two subunits of the BI3-encoded maturase, that binds to the BI3 RNA, Chr IX from 397291-398382, Verified ORF
YBL088C	108.873	1.00	17	218.2899	1	YBL088C	TEL1 SGDID:S000000184,Protein kinase, primarily involved in telomere length regulation; contributes to cell cycle checkpoint control in response to DNA damage; functionally redundant with Mec1p; homolog of human ataxia telangiectasia (ATM) gene, Chr II from 59379-51016, reverse complement, Verified ORF
YML105C	11.92	1.00	10	1172.8126	1	YML105C	SEC65 SGDID:S000004573,Subunit of the signal recognition particle (SRP), involved in protein targeting to the ER; interacts with Srp54p; homolog of mammalian SRP19, Chr XIII from 58687-57866, reverse complement, Verified ORF
YKL035W	23.57	1.00	79	4685.6777	1	YKL035W	UGP1 SGDID:S000001518,UDP-glucose pyrophosphorylase (UGPase), catalyses the reversible formation of UDP-Glc from glucose 1-phosphate and UTP, involved in a wide variety of metabolic pathways, expression modulated by Pho85p through Pho4p, Chr XI from 369534-371033, Verified ORF
YGR027C	4.26	0.99	33	10721.2259	2	YLR333C,YGR027C	RPS25A SGDID:S000003259,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Bp and has similarity to rat S25 ribosomal protein, Chr VII from 534462-534136, reverse complement, Verified ORF
YNL012W	24.3	0.83	8	382.0029	1	YNL012W	SPO1 SGDID:S000004957,Meiosis-specific protein with similarity to phospholipase B, required for meiotic spindle pole body duplication and separation; required for spore formation, Chr XIV from 609687-609791,609876-611666, Verified ORF
YDR141C	76.4	0.99	5	90.5767	1	YDR141C	DOP1 SGDID:S000002548,Protein of unknown function, essential for viability, involved in establishing cellular polarity and morphogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern, Chr IV from 739994-734898, reverse complement, Verified ORF
YGL171W	23.05	1.00	10	606.5044	1	YGL171W	ROK1 SGDID:S000003139,ATP-dependent RNA helicase of the DEAD box family; required for 18S rRNA synthesis, Chr VII from 182396-184090, Verified ORF
YLR115W	40.538	0.88	5	151.7383	1	YLR115W	CFT2 SGDID:S000004105,Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein., Chr XII from 377986-380565, Verified ORF
YEL031W	41.57	1.00	31	1042.5252	1	YEL031W	SPF1 SGDID:S000000757,P-type ATPase, ion transporter of the ER membrane involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1, Chr V from 90258-93905, Verified ORF
YBR151W	16.01	0.97	7	592.9026	1	YBR151W	APD1 SGDID:S000000355,Protein of unknown function, required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus, Chr II from 545022-545972, Verified ORF
YDL147W	18.268	0.97	3	222.6931	1	YDL147W	RPN5 SGDID:S000002306,Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to mammalian p55 subunit and to another S. cerevisiae regulatory subunit, Rpn7p, Chr IV from 190925-192262, Verified ORF
YJL129C	30.94	0.92	7	290.9849	1	YJL129C	TRK1 SGDID:S000003665,Component of the Trk1p-Trk2p potassium transport system; 180 kDa high affinity potassium transporter, Chr X from 177225-173518, reverse complement, Verified ORF
YDR533C	13.718	0.85	1	86.6229	1	YDR533C	HSP31 SGDID:S000002941,Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp32p, Hsp33p, and Sno4p; member of the DJ-1\ThiJ\PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease; exists as a dimer, Chr IV from 1502152-1501439, reverse complement, Verified ORF
YKL191W	11.92	1.00	6	703.6876	1	YKL191W	DPH2 SGDID:S000001674,Protein required, along with Dph1p, Kti11p, Jjj3p, and Dph5p, for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph1p and Kti11p, Chr XI from 81040-82644, Verified ORF
YDL100C	13.97	1.00	5	500.3553	1	YDL100C	GET3 SGDID:S000002258,ATPase, subunit of the GET complex; required for the retrieval of HDEL proteins from the Golgi to the ER in an ERD2 dependent fashion; involved in resistance to heat and metal stress, Chr IV from 283176-282112, reverse complement, Verified ORF
YGR198W	30.57	0.87	4	159.1434	1	YGR198W	YGR198W SGDID:S000003430,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; YGR198W is an essential gene, Chr VII from 894698-897151, Uncharacterized ORF
YBR177C	25.594	0.99	1	54.0756	1	YBR177C	EHT1 SGDID:S000000381,Possible serine hydrolase, localized to both lipid particles and mitochondrial outer membrane; may be involved in lipid metabolism; null mutant slightly temperature sensitive at 37C, Chr II from 586157-584802, reverse complement, Verified ORF
YJL034W	30.79	1.00	186	8445.1655	1	YJL034W	KAR2 SGDID:S000003571,ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding in the ER and may play a role in ER export of soluble proteins; regulates the unfolded protein response via interaction with Ire1p, Chr X from 381244-383292, Verified ORF
YBR081C	63.47	1.00	12	264.3124	1	YBR081C	SPT7 SGDID:S000000285,Subunit of the SAGA transcriptional regulatory complex, involved in proper assembly of the complex; also present as a C-terminally truncated form in the SLIK\SALSA transcriptional regulatory complex, Chr II from 405245-401247, reverse complement, Verified ORF
YNR059W	26.915	0.98	6	305.4132	1	YNR059W	MNT4 SGDID:S000005342,Putative alpha-1,3-mannosyltransferase, not required for protein O-glycosylation, Chr XIV from 736803-738545, Verified ORF
YDR034C	25.908	0.65	4	140.2957	1	YDR034C	LYS14 SGDID:S000002441,Transcriptional activator involved in regulation of genes of the lysine biosynthesis pathway; requires 2-aminoadipate semialdehyde as co-inducer, Chr IV from 512106-509734, reverse complement, Verified ORF
YBR033W	27.75	0.99	13	648.3663	1	YBR033W	YBR033W SGDID:S000000237,Non-essential protein of unknown function, Chr II from 301944-304703, Uncharacterized ORF
YDR144C	14.11	1.00	8	792.6252	1	YDR144C	MKC7 SGDID:S000002551,GPI-anchored aspartyl protease (yapsin) involved in protein processing; shares functions with Yap3p and Kex2p, Chr IV from 746098-744308, reverse complement, Verified ORF
YIL094C	16.45	1.00	33	2804.4838	1	YIL094C	LYS12 SGDID:S000001356,Homo-isocitrate dehydrogenase, an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate, Chr IX from 187629-186514, reverse complement, Verified ORF
YIL002W-A	6.75	1.00	16	3313.7605	1	YIL002W-A	YIL002W-A SGDID:S000028835,Identified by expression profiling and mass spectrometry, Chr IX from 350298-350507, Uncharacterized ORF
YAL049C	10.388	1.00	7	942.0436	1	YAL049C	YAL049C SGDID:S000000047,Hypothetical protein, Chr I from 52596-51856, reverse complement, Uncharacterized ORF
YMR078C	37.65	0.98	6	218.3319	1	YMR078C	CTF18 SGDID:S000004683,Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint, Chr XIII from 424727-422502, reverse complement, Verified ORF
YIL078W	39.02	1.00	145	5195.0011	1	YIL078W	THS1 SGDID:S000001340,Threonyl-tRNA synthetase, essential cytoplasmic protein, Chr IX from 212496-214700, Verified ORF
YOL162W	5.15	0.83	4	901.2302	1	YOL162W	YOL162W SGDID:S000005522,Hypothetical protein, member of the Dal5p subfamily of the major facilitator family, Chr XV from 10118-10765, Uncharacterized ORF
YKR084C	23.026	0.96	3	174.8553	1	YKR084C	HBS1 SGDID:S000001792,GTP binding protein with sequence similarity to the elongation factor class of G proteins, EF-1alpha and Sup35p; associates with Dom34p, and shares a similar genetic relationship with genes that encode ribosomal protein components, Chr XI from 598532-596697, reverse complement, Verified ORF
YKL209C	37.61	0.97	6	216.3338	1	YKL209C	STE6 SGDID:S000001692,ATP-binding cassette (ABC) transporter required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport, contains 12 transmembrane domains and two ATP binding domains, expressed only in MATa cells, Chr XI from 46296-42424, reverse complement, Verified ORF
YNR053C	31.27	1.00	22	983.5574	1	YNR053C	NOG2 SGDID:S000005336,Putative GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation, Chr XIV from 723113-722304,721772-721122, reverse complement, Verified ORF
YHR121W	11.329	0.93	3	344.2845	1	YHR121W	LSM12 SGDID:S000001163,Protein containing an Lsm domain and an AD domain; may bind RNA and have a role in RNA processing, Chr VIII from 352759-353322, Uncharacterized ORF
YBR246W	16.11	1.00	11	954.5574	1	YBR246W	YBR246W SGDID:S000000450,Hypothetical protein, Chr II from 711586-712749, Uncharacterized ORF
YKL180W	7.98	1.00	164	28730.6776	1	YKL180W	RPL17A SGDID:S000001663,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similarity to E. coli L22 and rat L17 ribosomal proteins; copurifies with the components of the outer kinetochore DASH complex, Chr XI from 109274-109582,109889-110134, Verified ORF
YGR037C	6.57	1.00	95	20214.5067	1	YGR037C	ACB1 SGDID:S000003269,Acyl-CoA-binding protein, transports newly synthesized acyl-CoA esters from fatty acid synthetase (Fas1p-Fas2p) to acyl-CoA-consuming processes, Chr VII from 559998-559735, reverse complement, Verified ORF
YDR071C	9.19	1.00	31	4715.7534	1	YDR071C	PAA1 SGDID:S000002478,Polyamine acetyltransferase; acetylates polyamines such as putrescine, spermidine and spermine; may be involved in transcription and\or DNA replication via regulation of levels of polyamines bound to chromosomal DNA, Chr IV from 589400-588825, reverse complement, Verified ORF
YHR107C	22.218	1.00	12	755.0595	1	YHR107C	CDC12 SGDID:S000001149,Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM, Chr VIII from 328039-326816, reverse complement, Verified ORF
YLL066C	49.33	0.99	5	140.281	6	YDR545W,YLR467W,YLR466W,YOR396W,YLL066C,YML133C	YLL066C SGDID:S000003989,Putative protein of unknown function with similarity to helicases; YLL066C is not an essential gene, Chr XII from 9836-9550,9450-6120, reverse complement, Uncharacterized ORF
YER112W	3.52	0.92	4	1461.5378	1	YER112W	LSM4 SGDID:S000000914,Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA, Chr V from 387228-387791, Verified ORF
YML123C	12.99	1.00	16	1721.9309	1	YML123C	PHO84 SGDID:S000004592,High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p, Chr XIII from 25801-24038, reverse complement, Verified ORF
YCR018C-A	0.44	0.78	1	2478.2598	1	YCR018C-A	YCR018C-A SGDID:S000007230,Similar to probable membrane protein YLR334C and ORF YOL106W, Chr III from 151860-151606, reverse complement, Dubious ORF
YBR191W	7.258	1.00	45	8667.6319	2	YBR191W,YPL079W	RPL21A SGDID:S000000395,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl21Bp and has similarity to rat L21 ribosomal protein, Chr II from 606265-606275,606664-607135, Verified ORF
YIL038C	30.99	0.94	1	42.4044	1	YIL038C	NOT3 SGDID:S000001300,Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation, Chr IX from 282651-280141, reverse complement, Verified ORF
YGL083W	36.797	0.71	2	53.9486	1	YGL083W	SCY1 SGDID:S000003051,Putative kinase, suppressor of GTPase mutant, similar to bovine rhodopsin kinase, Chr VII from 353061-355475, Verified ORF
YDR346C	16.38	1.00	50	4267.377	1	YDR346C	SVF1 SGDID:S000002754,Protein with a potential role in cell survival pathways, required for the diauxic growth shift; expression in mammalian cells increases survival under conditions inducing apoptosis, Chr IV from 1168653-1167208, reverse complement, Verified ORF
YDR001C	40.869	1.00	3	102.62	1	YDR001C	NTH1 SGDID:S000002408,Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses; may be phosphorylated by Cdc28p, Chr IV from 452472-450217, reverse complement, Verified ORF
YBL045C	18.28	1.00	39	2982.5884	1	YBL045C	COR1 SGDID:S000000141,Core subunit of the ubiquinol-cytochrome c reductase complex (bc1 complex), which is a component of the mitochondrial inner membrane electron transport chain, Chr II from 135519-134146, reverse complement, Verified ORF
YDR091C	24.116	1.00	63	3652.0791	1	YDR091C	RLI1 SGDID:S000002498,Essential iron-sulfur protein required for ribosome biogenesis and translation initiation; facilitates binding of a multifactor complex (MFC) of translation initiation factors to the small ribosomal subunit; predicted ABC family ATPase, Chr IV from 628531-626705, reverse complement, Verified ORF
YMR229C	94.146	1.00	50	742.4599	1	YMR229C	RRP5 SGDID:S000004842,Protein required for the synthesis of both 18S and 5.8S rRNA; C-terminal region is crucial for the formation of 18S rRNA and N-terminal region is required for the 5.8S rRNA; component of small ribosomal subunit (SSU) processosome, Chr XIII from 731122-725933, reverse complement, Verified ORF
YLR149C	20.92	0.91	23	1398.6609	1	YLR149C	YLR149C SGDID:S000004139,Putative protein of unknown function; YLR149C is not an essential gene, Chr XII from 439824-437632, reverse complement, Uncharacterized ORF
YKR092C	8.29	0.99	2	333.8993	1	YKR092C	SRP40 SGDID:S000001800,Nucleolar, serine-rich protein with a role in preribosome assembly or transport; may function as a chaperone of small nucleolar ribonucleoprotein particles (snoRNPs); immunologically and structurally to rat Nopp140, Chr XI from 613527-612307, reverse complement, Verified ORF
YIL156W	41.84	1.00	16	534.6052	1	YIL156W	UBP7 SGDID:S000001418,Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, Chr IX from 48091-51306, Verified ORF
YOR286W	7.9	0.99	3	525.5744	1	YOR286W	YOR286W SGDID:S000005812,The authentic, non-tagged protein was localized to the mitochondria, Chr XV from 850279-850728, Uncharacterized ORF
YOR315W	14.948	0.99	2	185.1769	1	YOR315W	SFG1 SGDID:S000005842,Nuclear protein, putative transcription factor required for growth of superficial pseudohyphae (which do not invade the agar substrate) but not for invasive pseudohyphal growth; may act together with Phd1p; potential Cdc28p substrate, Chr XV from 904757-905797, Verified ORF
YNL010W	10.46	1.00	17	2272.0723	1	YNL010W	YNL010W SGDID:S000004955,Hypothetical protein, Chr XIV from 613636-614361, Uncharacterized ORF
YMR208W	13.28	0.93	1	97.9015	1	YMR208W	ERG12 SGDID:S000004821,Mevalonate kinase, acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate, Chr XIII from 684466-685797, Verified ORF
YNR019W	12.17	0.97	2	222.8517	1	YNR019W	ARE2 SGDID:S000005302,Acyl-CoA:sterol acyltransferase, isozyme of Are1p; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen, Chr XIV from 665341-667269, Verified ORF
YPL235W	25.75	0.99	6	322.4884	1	YPL235W	RVB2 SGDID:S000006156,Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; member of the RUVB-like protein family, Chr XVI from 103232-104647, Verified ORF
YFL010C	2.93	1.00	41	19562.3555	1	YFL010C	WWM1 SGDID:S000001884,WW domain containing protein of unknown function; binds to Mca1p, a caspase-related protease that regulates H2O2-induced apoptosis; overexpression causes Gi phase growth arrest and clonal death that is suppressed by overexpression of MCA1, Chr VI from 115737-115102, reverse complement, Verified ORF
YBR218C	48.807	1.00	57	1632.6671	1	YBR218C	PYC2 SGDID:S000000422,Pyruvate carboxylase isoform, cytoplasmic enzyme that converts pyruvate to oxaloacetate; highly similar to isoform Pyc1p but differentially regulated; mutations in the human homolog are associated with lactic acidosis, Chr II from 662244-658702, reverse complement, Verified ORF
YNL079C	15.59	1.00	79	7084.1196	1	YNL079C	TPM1 SGDID:S000005023,Major isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; acetylated by the NatB complex and acetylated form binds actin most efficiently, Chr XIV from 479166-478567, reverse complement, Verified ORF
YJL207C	88.557	0.97	10	153.1276	1	YJL207C	YJL207C SGDID:S000003743,Protein of unknown function, proposed to function as a large AP-1 accessory protein; colocalizes with clathrin to the late-Golgi apparatus; YJL207C is a non-essential gene, Chr X from 47433-41389, reverse complement, Uncharacterized ORF
YHR104W	18.5	1.00	4	302.2686	1	YHR104W	GRE3 SGDID:S000001146,Aldose reductase involved in methylglyoxal, d-xylose and arabinose metabolism; stress induced (osmotic, ionic, oxidative, heat shock, starvation and heavy metals); regulated by the HOG pathway, Chr VIII from 323412-324395, Verified ORF
YLR089C	17.77	1.00	12	944.0581	1	YLR089C	YLR089C SGDID:S000004079,Putative alanine transaminase (glutamic pyruvic transaminase), Chr XII from 320016-318238, reverse complement, Uncharacterized ORF
YOR361C	37.538	1.00	67	2495.2185	1	YOR361C	PRT1 SGDID:S000005888,Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes, Chr XV from 1017650-1015359, reverse complement, Verified ORF
YLL008W	30.44	1.00	16	734.8187	1	YLL008W	DRS1 SGDID:S000003931,Nucleolar DEAD-box protein required for ribosome assembly and function, including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles, Chr XII from 131728-133986, Verified ORF
YPL226W	59.398	1.00	115	2706.6427	1	YPL226W	NEW1 SGDID:S000006147,ATP binding cassette family member; Asn\Gln-rich rich region supports [NU+] prion formation, susceptibility to [PSI+] prion induction and aggregation of a fragment of the human Machado-Joseph Disease protein, Chr XVI from 121767-125357, Verified ORF
YPL111W	13.658	1.00	4	409.4282	1	YPL111W	CAR1 SGDID:S000006032,Arginase, responsible for arginine degradation, expression responds to both induction by arginine and nitrogen catabolite repression; disruption enhances freeze tolerance, Chr XVI from 339943-340944, Verified ORF
YML031W	17.77	0.74	10	582.1691	1	YML031W	NDC1 SGDID:S000004493,Nuclear envelope protein with multiple putative transmembrane domains, required for nuclear pore complex assembly and spindle pole body duplication; required for meiosis II, Chr XIII from 214189-216156, Verified ORF
YHR146W	19.73	1.00	16	1133.6991	1	YHR146W	CRP1 SGDID:S000001189,Protein that binds to cruciform DNA structures, Chr VIII from 390303-391700, Verified ORF
YOR065W	10.54	0.98	6	779.9048	1	YOR065W	CYT1 SGDID:S000005591,Cytochrome c1, component of the mitochondrial respiratory chain; expression is regulated by the heme-activated, glucose-repressed Hap2p\3p\4p\5p CCAAT-binding complex, Chr XV from 447441-448370, Verified ORF
YNR014W	4.48	0.98	42	12844.0581	1	YNR014W	YNR014W SGDID:S000005297,Hypothetical protein, Chr XIV from 652467-653105, Uncharacterized ORF
YOL061W	18.16	1.00	15	1154.7296	1	YOL061W	PRS5 SGDID:S000005422,5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes, Chr XV from 212244-213734, Verified ORF
YGL146C	6.38	0.95	1	208.165	1	YGL146C	YGL146C SGDID:S000003114,Hypothetical protein, Chr VII from 229691-228756, reverse complement, Uncharacterized ORF
YER043C	18.57	1.00	256	19272.2745	1	YER043C	SAH1 SGDID:S000000845,S-adenosyl-L-homocysteine hydrolase, catabolizes S-adenosyl-L-homocysteine which is formed after donation of the activated methyl group of S-adenosyl-L-methionine (AdoMet) to an acceptor, Chr V from 237118-235769, reverse complement, Verified ORF
YMR054W	25.286	0.83	6	275.3303	1	YMR054W	STV1 SGDID:S000004658,Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole, Chr XIII from 383302-385974, Verified ORF
YDL014W	10.11	1.00	190	26272.8603	1	YDL014W	NOP1 SGDID:S000002172,Nucleolar protein, component of the small subunit processome complex, which is required for processing of pre-18S rRNA; has similarity to mammalian fibrillarin, Chr IV from 427361-428344, Verified ORF
YGL026C	31.31	1.00	172	7679.8067	1	YGL026C	TRP5 SGDID:S000002994,Tryptophan synthase involved in tryptophan biosynthesis, regulated by the general control system of amino acid biosynthesis, Chr VII from 448540-446417, reverse complement, Verified ORF
YCL064C	13.049	1.00	7	749.9386	1	YCL064C	CHA1 SGDID:S000000569,Catabolic L-serine (L-threonine) deaminase, catalyzes the degradation of both L-serine and L-threonine; required to use serine or threonine as the sole nitrogen source, transcriptionally induced by serine and threonine, Chr III from 16880-15798, reverse complement, Verified ORF
YDR264C	24.617	1.00	6	340.7383	1	YDR264C	AKR1 SGDID:S000002672,Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats, Chr IV from 998319-996025, reverse complement, Verified ORF
YDR493W	5.17	0.88	2	475.9124	1	YDR493W	YDR493W SGDID:S000002901,The authentic, non-tagged protein was localized to the mitochondria, Chr IV from 1436209-1436580, Uncharacterized ORF
YMR231W	42.06	1.00	5	166.1902	1	YMR231W	PEP5 SGDID:S000004844,Peripheral vacuolar membrane protein required for protein trafficking and vacuole biogenesis; forms complex with Pep3p that promotes vesicular docking\fusion reactions in conjunction with SNARE proteins, also interacts with Pep7p, Chr XIII from 733544-736633, Verified ORF
YGL022W	21.59	1.00	16	1036.0298	1	YGL022W	STT3 SGDID:S000002990,Subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins; forms a subcomplex with Ost3p and Ost4p and is directly involved in catalysis, Chr VII from 452409-454565, Verified ORF
YLR192C	11.25	1.00	47	5840.5029	1	YLR192C	HCR1 SGDID:S000004182,Dual function protein involved in translation initiation as a substoichiometric component of eukaryotic translation initiation factor 3 (eIF3) and required for processing of 20S pre-rRNA; binds to eIF3 subunits Rpg1p and Prt1p and 18S rRNA, Chr XII from 539591-538794, reverse complement, Verified ORF
YOR265W	8.37	1.00	9	1503.2179	1	YOR265W	RBL2 SGDID:S000005791,Protein involved in microtubule morphogenesis, required for protection from excess free beta-tubulin; proposed to be involved the folding of beta-tubulin, Chr XV from 820453-820773, Verified ORF
YBR143C	24.525	1.00	38	2166.1049	1	YBR143C	SUP45 SGDID:S000000347,Polypeptide release factor involved in translation termination; mutant form acts as a recessive omnipotent suppressor, Chr II from 532176-530863, reverse complement, Verified ORF
YOR326W	75.55	1.00	20	370.0841	1	YOR326W	MYO2 SGDID:S000005853,One of two type V myosins, involved in polarized distribution of mitochondria; required for mitochondrion and vacuole inheritance and nuclear spindle orientation; moves multiple cargo; reversibly phosphorylated in vivo, Chr XV from 925718-930442, Verified ORF
YJR064W	27.169	1.00	14	720.376	1	YJR064W	CCT5 SGDID:S000003825,Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo, Chr X from 555829-557517, Verified ORF
YOR038C	35.32	0.80	6	189.9876	1	YOR038C	HIR2 SGDID:S000005564,Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3, and H4 genes; recruits Swi-Snf complexes to histone gene promoters; promotes heterochromatic gene silencing with Asf1p, Chr XV from 405388-402761, reverse complement, Verified ORF
YIL103W	17.35	0.99	7	558.3913	1	YIL103W	DPH1 SGDID:S000001365,Protein required, along with Dph2p, Kti11p, Jjj3p, and Dph5p, for synthesis of diphthamide, which is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph2p and Kti11p, Chr IX from 171748-173025, Verified ORF
YLR426W	11.84	0.96	9	1020.1568	1	YLR426W	YLR426W SGDID:S000004418,Putative protein of unknown function localized to the mitochondria; proposed to be involved in resistance to mechlorethamine and streptozotocin, Chr XII from 987059-987138,987210-988110, Uncharacterized ORF
YOR276W	4.23	0.99	4	1308.7591	1	YOR276W	CAF20 SGDID:S000005802,Phosphoprotein of the mRNA cap-binding complex involved in translational control, repressor of cap-dependent translation initiation, competes with eIF4G for binding to eIF4E, Chr XV from 841332-841817, Verified ORF
YGR261C	35.456	0.97	12	458.9529	1	YGR261C	APL6 SGDID:S000003493,Beta3-like subunit of the yeast AP-3 complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; exists in both cytosolic and peripherally associated membrane-bound pools, Chr VII from 1016756-1014327, reverse complement, Verified ORF
YGR253C	11.38	1.00	9	1105.6181	1	YGR253C	PUP2 SGDID:S000003485,Alpha subunit of the 20S proteasome involved in ubiquitin-dependent catabolism; human homolog is subunit zeta, Chr VII from 999145-998363, reverse complement, Verified ORF
YDR055W	10.67	1.00	9	1179.1878	1	YDR055W	PST1 SGDID:S000002462,Cell wall protein that contains a putative GPI-attachment site; secreted by regenerating protoplasts; up-regulated by activation of the cell integrity pathway, as mediated by Rlm1p; upregulated by cell wall damage via disruption of FKS1, Chr IV from 563525-564859, Verified ORF
YDL190C	38.37	1.00	6	218.6071	1	YDL190C	UFD2 SGDID:S000002349,Ubiquitin chain assembly factor (E4) that cooperates with a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2), and a ubiquitin protein ligase (E3) to conjugate ubiquitin to substrates; also functions as an E3, Chr IV from 121593-118708, reverse complement, Verified ORF
YLR335W	35.13	1.00	20	795.8967	1	YLR335W	NUP2 SGDID:S000004327,Protein involved in nucleocytoplasmic transport, binds to either the nucleoplasmic or cytoplasmic faces of the nuclear pore complex depending on Ran-GTP levels; also has a role in chromatin organization, Chr XII from 797430-799592, Verified ORF
YMR190C	56.84	0.69	1	16.9707	1	YMR190C	SGS1 SGDID:S000004802,Nucleolar DNA helicase of the RecQ family involved in maintenance of genome integrity, regulates chromosome synapsis and meiotic crossing over; has similarity to human BLM and WRN helicases implicated in Bloom and Werner syndromes, Chr XIII from 645257-640914, reverse complement, Verified ORF
YJR017C	10.948	1.00	13	1660.0205	1	YJR017C	ESS1 SGDID:S000003778,Peptidylprolyl-cis\trans-isomerase (PPIase) specific for phosphorylated serine and threonine residues N-terminal to proline; regulates phosphorylation of the RNA polymerase II large subunit (Rpo21p) C-terminal domain, Chr X from 466948-466436, reverse complement, Verified ORF
YKR048C	14.339	1.00	54	5264.7749	1	YKR048C	NAP1 SGDID:S000001756,Protein that interacts with mitotic cyclin Clb2p; required for the regulation of microtubule dynamics during mitosis; controls bud morphogenesis; involved in the transport of H2A and H2B histones to the nucleus, Chr XI from 526282-525029, reverse complement, Verified ORF
YDR129C	32.34	1.00	57	2463.9946	1	YDR129C	SAC6 SGDID:S000002536,Fimbrin, actin-bundling protein; cooperates with Scp1p (calponin\transgelin) in the organization and maintenance of the actin cytoskeleton, Chr IV from 715376-715356,715244-713337, reverse complement, Verified ORF
YMR099C	15.65	1.00	45	4019.7873	1	YMR099C	YMR099C SGDID:S000004705,Hypothetical protein, Chr XIII from 464826-463933, reverse complement, Uncharacterized ORF
YLL026W	43.09	1.00	77	2498.1536	1	YLL026W	HSP104 SGDID:S000003949,Heat shock protein that cooperates with Ydj1p (Hsp40) and Ssa1p (Hsp70) to refold and reactivate previously denatured, aggregated proteins; responsive to stresses including: heat, ethanol, and sodium arsenite; involved in [PSI+] propagation, Chr XII from 88622-91348, Verified ORF
YMR027W	26.263	1.00	26	1383.9931	1	YMR027W	YMR027W SGDID:S000004629,High level expression reduced Ty3 Transposition, Chr XIII from 325876-327288, Uncharacterized ORF
YGR135W	12.55	1.00	17	1893.6953	1	YGR135W	PRE9 SGDID:S000003367,20S proteasome beta-type subunit; the only nonessential 20S subunit, Chr VII from 761397-762173, Verified ORF
YHR099W	155.96	1.00	27	242.0223	1	YHR099W	TRA1 SGDID:S000001141,Subunit of SAGA and NuA4 histone acetyltransferase complexes; interacts with acidic activators (e.g., Gal4p) which leads to transcription activation; similar to human TRRAP, which is a cofactor for c-Myc mediated oncogenic transformation, Chr VIII from 302764-313998, Verified ORF
YMR283C	18.15	0.98	18	1358.7102	1	YMR283C	RIT1 SGDID:S000004896,2'-O-ribosyl phosphate transferase, modifies the initiator methionine tRNA at position 64 to distinguish it from elongator methionine tRNA, Chr XIII from 836866-835325, reverse complement, Verified ORF
YER083C	7.83	1.00	5	892.7156	1	YER083C	GET2 SGDID:S000000885,Subunit of the GET complex; required for meiotic nuclear division and for the retrieval of HDEL proteins from the Golgi to the ER in an ERD2 dependent fashion; may be involved in cell wall function, Chr V from 327027-326170, reverse complement, Verified ORF
YLR360W	14.508	0.69	8	531.9079	1	YLR360W	VPS38 SGDID:S000004352,Part of a Vps34p phosphatidylinositol 3-kinase complex that functions in carboxypeptidase Y (CPY) sorting; binds Vps30p and Vps34p to promote production of phosphatidylinositol 3-phosphate (PtdIns3P) which stimulates kinase activity, Chr XII from 846102-847421, Verified ORF
YBR137W	7.02	0.95	1	189.187	1	YBR137W	YBR137W SGDID:S000000341,Protein of unknown function; localized to the cytoplasm; binds to Replication Protein A (RPA); YBR137W is not an essential gene, Chr II from 513038-513577, Uncharacterized ORF
YBR011C	22.33	1.00	340	21286.0514	1	YBR011C	IPP1 SGDID:S000000215,Cytoplasmic inorganic pyrophosphatase (PPase), catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase, Chr II from 257973-257110, reverse complement, Verified ORF
YJR062C	23.878	0.99	6	347.771	1	YJR062C	NTA1 SGDID:S000003823,Amidase, removes the amide group from N-terminal asparagine and glutamine residues to generate proteins with N-terminal aspartate and glutamate residues that are targets of ubiquitin-mediated degradation, Chr X from 554764-553391, reverse complement, Verified ORF
YKL212W	30.328	1.00	26	1198.4902	1	YKL212W	SAC1 SGDID:S000001695,Lipid phosphoinositide phosphatase of the ER and Golgi, involved in protein trafficking and secretion, Chr XI from 34544-36415, Verified ORF
YNL281W	8.45	0.98	2	324.2681	1	YNL281W	HCH1 SGDID:S000005225,Heat shock protein regulator that binds to Hsp90p and may stimulate ATPase activity; originally identified as a high-copy number suppressor of a HSP90 loss-of-function mutation; GFP-fusion protein localizes to the cytoplasm and nucleus, Chr XIV from 108467-108928, Verified ORF
YPL082C	76.405	1.00	13	237.8627	1	YPL082C	MOT1 SGDID:S000006003,Essential abundant protein involved in regulation of transcription, removes Spt15p (TBP) from DNA via its C-terminal ATPase activity, forms a complex with TBP that binds TATA DNA with high affinity but with altered specificity, Chr XVI from 404080-398477, reverse complement, Verified ORF
YDR063W	4.26	0.69	1	226.4354	1	YDR063W	YDR063W SGDID:S000002470,Hypothetical protein, Chr IV from 578661-579110, Uncharacterized ORF
YLR247C	70.178	1.00	5	99.6033	1	YLR247C	YLR247C SGDID:S000004237,Hypothetical protein, Chr XII from 633356-628686, reverse complement, Uncharacterized ORF
YHL030W	82.09	1.00	11	187.33	1	YHL030W	ECM29 SGDID:S000001022,Major component of the proteasome; tethers the proteasome core particle to the regulatory particle, and enhances the stability of the proteasome, Chr VIII from 40082-45688, Verified ORF
YLR419W	74.017	1.00	18	339.9741	1	YLR419W	YLR419W SGDID:S000004411,Hypothetical protein, Chr XII from 958425-962732, Uncharacterized ORF
YOR142W	14.17	1.00	33	3255.7346	1	YOR142W	LSC1 SGDID:S000005668,Alpha subunit of succinyl-CoA ligase, which is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate, Chr XV from 593058-594047, Verified ORF
YLR430W	100.657	1.00	17	236.1075	1	YLR430W	SEN1 SGDID:S000004422,Nuclear protein, putative helicase required for processing of tRNAs, rRNAs, and small nuclear RNAs; potential Cdc28p substrate, Chr XII from 993431-1000126, Verified ORF
YDR304C	10.078	1.00	51	7074.5811	1	YDR304C	CPR5 SGDID:S000002712,Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the endoplasmic reticulum, catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; transcriptionally induced in response to unfolded proteins in the ER, Chr IV from 1072553-1071876, reverse complement, Verified ORF
YHR001W-A	2.05	0.77	2	1050.1994	1	YHR001W-A	QCR10 SGDID:S000003529,Subunit of the ubiqunol-cytochrome c oxidoreductase complex, involved in aerobic respiration, Chr VIII from 107821-107826,107890-108117, Verified ORF
YML051W	14.098	0.82	1	81.3132	1	YML051W	GAL80 SGDID:S000004515,Transcriptional regulator involved in the repression of GAL genes in the absence of galactose; inhibits transcriptional activation by Gal4p; inhibition relieved by Gal3p or Gal1p binding, Chr XIII from 171594-172901, Verified ORF
YCL014W	84.214	1.00	16	265.6076	1	YCL014W	BUD3 SGDID:S000000520,Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding, Chr III from 96281-101191, Verified ORF
YDR422C	28.36	0.65	2	64.0828	1	YDR422C	SIP1 SGDID:S000002830,Alternate beta-subunit of the Snf1p kinase complex, may confer substrate specificity; vacuolar protein containing KIS (Kinase-Interacting Sequence) and ASC (Association with Snf1 kinase Complex) domains involved in protein interactions, Chr IV from 1317765-1315318, reverse complement, Verified ORF
YIL014W	22.495	0.84	3	156.6099	1	YIL014W	MNT3 SGDID:S000001276,Alpha-1,3-mannosyltransferase, adds the fourth and fifth alpha-1,3-linked mannose residues to O-linked glycans during protein O-glycosylation, Chr IX from 326101-327993, Verified ORF
YBR057C	11.88	0.93	2	218.8776	1	YBR057C	MUM2 SGDID:S000000261,Cytoplasmic protein essential for meiotic DNA replication and sporulation; interacts with Orc2p, which is a component of the origin recognition complex, Chr II from 353291-352191, reverse complement, Verified ORF
YOR153W	40.02	1.00	61	2130.8734	1	YOR153W	PDR5 SGDID:S000005679,Short-lived membrane ABC (ATP-binding cassette) transporter, actively exports various drugs, expression regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth, Chr XV from 619841-624376, Verified ORF
YPL032C	21.92	0.93	13	771.0644	1	YPL032C	SVL3 SGDID:S000005953,Protein of unknown function, mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck, Chr XVI from 491362-488885, reverse complement, Verified ORF
YDL051W	13.37	1.00	11	1150.181	1	YDL051W	LHP1 SGDID:S000002209,RNA binding protein required for maturation of tRNA and snRNA precursors; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen, Chr IV from 363952-364779, Verified ORF
YLL040C	136.978	1.00	19	193.9133	1	YLL040C	VPS13 SGDID:S000003963,Protein of unknown function; heterooligomeric or homooligomeric complex; peripherally associated with membranes; homologous to human COH1; involved in sporulation, vacuolar protein sorting and protein-Golgi retention, Chr XII from 63644-54210, reverse complement, Verified ORF
YEL071W	23.102	1.00	60	3630.8355	1	YEL071W	DLD3 SGDID:S000000797,D-lactate dehydrogenase, part of the retrograde regulon which consists of genes whose expression is stimulated by damage to mitochondria and reduced in cells grown with glutamate as the sole nitrogen source, located in the cytoplasm, Chr V from 16355-17845, Verified ORF
YLR389C	47.256	0.95	2	56.2084	1	YLR389C	STE23 SGDID:S000004381,Metalloprotease involved, with homolog Axl1p, in N-terminal processing of pro-a-factor to the mature form; member of the insulin-degrading enzyme family, Chr XII from 902660-899577, reverse complement, Verified ORF
YGR157W	26.13	0.92	4	196.8853	1	YGR157W	CHO2 SGDID:S000003389,Phosphatidylethanolamine methyltransferase (PEMT), catalyzes the first step in the conversion of phosphatidylethanolamine to phosphatidylcholine during the methylation pathway of phosphatidylcholine biosynthesis, Chr VII from 802445-805054, Verified ORF
YJL072C	8.25	0.89	8	1206.51	1	YJL072C	PSF2 SGDID:S000003608,Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p), which is localized to DNA replication origins and implicated in assembly of the DNA replication machinery, Chr X from 305779-305138, reverse complement, Verified ORF
YNL263C	10.9	0.89	1	114.148	1	YNL263C	YIF1 SGDID:S000005207,Integral membrane protein required for the fusion of ER-derived COPII transport vesicles with the Golgi; interacts with Yip1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles, Chr XIV from 147841-146897, reverse complement, Verified ORF
YOR061W	13.59	0.99	6	611.0431	1	YOR061W	CKA2 SGDID:S000005587,Alpha' catalytic subunit of casein kinase 2, a Ser\Thr protein kinase with roles in cell growth and proliferation; the holoenzyme also contains CKA1, CKB1 and CKB2, the many substrates include transcription factors and all RNA polymerases, Chr XV from 441536-442555, Verified ORF
YPL154C	14.55	1.00	58	5572.7545	1	YPL154C	PEP4 SGDID:S000006075,Vacuolar aspartyl protease (proteinase A), required for the posttranslational precursor maturation of vacuolar proteinases; synthesized as a zymogen, self-activates, Chr XVI from 260930-259713, reverse complement, Verified ORF
YDR033W	4.68	1.00	51	15234.5361	1	YDR033W	MRH1 SGDID:S000002440,Protein that localizes primarily to the plasma membrane, also found at the nuclear envelope; has similarity to Hsp30p and Yro2p, which are induced during heat shock, Chr IV from 508144-509106, Verified ORF
YPR154W	5.91	0.96	2	454.1702	1	YPR154W	PIN3 SGDID:S000006358,Protein that induces appearance of [PIN+] prion when overproduced, Chr XVI from 834561-835208, Verified ORF
YDR303C	34.22	1.00	6	245.1185	1	YDR303C	RSC3 SGDID:S000002711,One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; essential gene required for regulation of ribosomal protein genes and the cell wall\stress response; highly similar to Rsc30p, Chr IV from 1071382-1068725, reverse complement, Verified ORF
YKL148C	23.909	1.00	7	409.2998	1	YKL148C	SDH1 SGDID:S000001631,Flavoprotein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxidation of succinate to the transfer of electrons to ubiquinone, Chr XI from 171134-169212, reverse complement, Verified ORF
YNL241C	28.66	1.00	76	3707.1684	1	YNL241C	ZWF1 SGDID:S000005185,Glucose-6-phosphate dehydrogenase (G6PD), catalyzes the first step of the pentose phosphate pathway; involved in adapting to oxidatve stress; homolog of the human G6PD which is deficient in patients with hemolytic anemia, Chr XIV from 197944-196427, reverse complement, Verified ORF
YDR038C	36.19	1.00	17	656.6973	3	YDR039C,YDR038C,YDR040C	ENA5 SGDID:S000002445,Protein with similarity to P-type ATPase sodium pumps, Chr IV from 530694-527419, reverse complement, Verified ORF
YGR238C	34.92	0.72	3	86.4737	1	YGR238C	KEL2 SGDID:S000003470,Protein that functions in a complex with Kel1p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate, Chr VII from 968692-966044, reverse complement, Verified ORF
YEL011W	29.64	0.75	4	141.4972	1	YEL011W	GLC3 SGDID:S000000737,Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern, Chr V from 133120-135234, Verified ORF
YJL217W	11.06	0.98	10	1238.7277	1	YJL217W	YJL217W SGDID:S000003753,Cytoplasmic protein of unknown function; expression induced by calcium shortage and via the copper sensing transciption factor Mac1p during conditons of copper deficiency; mRNA is cell cycle regulated, peaking in G1 phase, Chr X from 23133-23729, Uncharacterized ORF
YML103C	54.658	1.00	6	153.4625	1	YML103C	NUP188 SGDID:S000004571,Subunit of the nuclear pore complex (NPC), involved in the structural organization of the complex and of the nuclear envelope, also involved in nuclear envelope permeability, interacts with Pom152p and Nic96p, Chr XIII from 67549-62582, reverse complement, Verified ORF
YIL051C	7.26	1.00	189	36394.0255	1	YIL051C	MMF1 SGDID:S000001313,Mitochondrial protein involved in maintenance of the mitochondrial genome, Chr IX from 258279-257842, reverse complement, Verified ORF
YLR397C	35.97	1.00	10	388.6551	1	YLR397C	AFG2 SGDID:S000004389,ATPase of the CDC48\PAS1\SEC18 (AAA) family, forms a hexameric complex; may be involved in degradation of aberrant mRNAs, Chr XII from 914892-912550, reverse complement, Verified ORF
YDL140C	58.099	1.00	31	745.9297	1	YDL140C	RPO21 SGDID:S000002299,RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime, Chr IV from 210562-205361, reverse complement, Verified ORF
YPL129W	9.33	1.00	10	1498.3844	1	YPL129W	TAF14 SGDID:S000006050,Subunit (30 kDa) of TFIID, TFIIF, and SWI\SNF complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, contains a YEATS domain, Chr XVI from 305297-305305,305411-306136, Verified ORF
YKL058W	6.44	0.99	17	3653.4499	1	YKL058W	TOA2 SGDID:S000001541,TFIIA small subunit; involved in transcriptional activation, acts as antirepressor or as coactivator; homologous to smallest subunit of human and Drosophila TFIIA, Chr XI from 329810-330178, Verified ORF
YOR204W	26.74	1.00	143	7476.1765	1	YOR204W	DED1 SGDID:S000005730,ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, required for translation initiation of all yeast mRNAs; mutations in human DEAD-box DBY are a frequent cause of male infertility, Chr XV from 722912-724726, Verified ORF
YOR367W	14.478	0.99	6	573.5651	1	YOR367W	SCP1 SGDID:S000005894,Component of yeast cortical actin cytoskeleton, binds and cross links actin filaments; originally identified by its homology to calponin (contains a calponin-like repeat) but the Scp1p domain structure is more similar to transgelin, Chr XV from 1026005-1026607, Verified ORF
YOL059W	13.547	1.00	40	4127.8297	1	YOL059W	GPD2 SGDID:S000005420,NAD-dependent glycerol 3-phosphate dehydrogenase, homolog of Gpd1p, expression is controlled by an oxygen-independent signaling pathway required to regulate metabolism under anoxic conditions; located in cytosol and mitochondria, Chr XV from 217126-218448, Verified ORF
YOR165W	38.924	0.97	6	209.0308	1	YOR165W	SEY1 SGDID:S000005691,Protein of unknown function, contains two predicted GTP-binding motifs GXXXXGKS and DXXG near the N-terminus, homolog of the Arabidopsis gene RHD3 (Root Hair Defective), Chr XV from 644567-646897, Verified ORF
YJR088C	11.87	0.99	2	233.195	1	YJR088C	YJR088C SGDID:S000003848,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum, Chr X from 587288-586410, reverse complement, Uncharacterized ORF
YJL089W	23.83	0.67	1	39.3057	1	YJL089W	SIP4 SGDID:S000003625,C6 zinc cluster transcriptional activator that binds to the carbon source-responsive element (CSRE) of gluconeogenic genes; involved in the positive regulation of gluconeogenesis; regulated by Snf1p protein kinase; localized to the nucleus, Chr X from 265843-268332, Verified ORF
YCR014C	27.99	1.00	5	249.7307	1	YCR014C	POL4 SGDID:S000000607,DNA polymerase IV, undergoes pair-wise interactions with Dnl4p-Lif1p and Rad27p to mediate repair of DNA double-strand breaks by non-homologous end joining (NHEJ); homologous to mammalian DNA polymerase beta, Chr III from 140931-139183, reverse complement, Verified ORF
YJR109C	44.98	1.00	55	1709.4175	1	YJR109C	CPA2 SGDID:S000003870,Large subunit of carbamoyl phosphate synthetase, which catalyzes a step in the synthesis of citrulline, an arginine precursor, Chr X from 632857-629501, reverse complement, Verified ORF
YOR022C	30.758	0.97	8	352.7025	1	YOR022C	YOR022C SGDID:S000005548,Hypothetical protein, Chr XV from 375857-373710, reverse complement, Uncharacterized ORF
YNL176C	11.56	0.99	16	1915.5886	1	YNL176C	YNL176C SGDID:S000005120,Hypothetical protein, Chr XIV from 306982-305072, reverse complement, Uncharacterized ORF
YKL068W	16.08	0.73	1	63.466	1	YKL068W	NUP100 SGDID:S000001551,Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a repetitive GLFG motif that interacts with mRNA export factor Mex67p and with karyopherin Kap95p; homologous to Nup116p, Chr XI from 309843-312722, Verified ORF
YHR020W	33.96	1.00	214	8809.4948	1	YHR020W	YHR020W SGDID:S000001062,Putative protein of unknown function, has similarity to proline-tRNA ligase; YHR020W is an essential gene, Chr VIII from 143989-146055, Uncharacterized ORF
YDR454C	11.46	1.00	112	13662.7561	1	YDR454C	GUK1 SGDID:S000002862,Guanylate kinase, converts GMP to GDP; required for growth and mannose outer chain elongation of cell wall N-linked glycoproteins, Chr IV from 1366819-1366256, reverse complement, Verified ORF
YMR235C	21.407	1.00	27	1763.2458	1	YMR235C	RNA1 SGDID:S000004848,GTPase activating protein (GAP) for Gsp1p, involved in nuclear transport, Chr XIII from 742734-741511, reverse complement, Verified ORF
YGR123C	17.03	1.00	7	574.63	1	YGR123C	PPT1 SGDID:S000003355,Protein serine\threonine phosphatase with similarity to human phosphatase PP5; present in both the nucleus and cytoplasm; expressed during logarithmic growth, Chr VII from 738208-736667, reverse complement, Verified ORF
YGL099W	33.17	1.00	32	1348.6815	1	YGL099W	LSG1 SGDID:S000003067,Putative GTPase involved in 60S ribosomal subunit biogenesis; required for the release of Nmd3p from 60S subunits in the cytoplasm, Chr VII from 314634-316556, Verified ORF
YJL187C	32.355	0.99	6	256.6551	1	YJL187C	SWE1 SGDID:S000003723,Protein kinase that regulates the G2\M transition by inhibition of Cdc28p kinase activity; localizes to the nucleus and to the daughter side of the mother-bud neck; homolog of S. pombe Wee1p; potential Cdc28p substrate, Chr X from 79261-76802, reverse complement, Verified ORF
YBL050W	16.128	1.00	25	2167.0274	1	YBL050W	SEC17 SGDID:S000000146,Peripheral membrane protein required for vesicular transport between ER and Golgi and for the 'priming' step in homotypic vacuole fusion, part of the cis-SNARE complex; has similarity to alpha-SNAP, Chr II from 125128-125157,125274-126122, Verified ORF
YBR269C	9.48	0.99	4	583.9716	1	YBR269C	YBR269C SGDID:S000000473,The authentic, non-tagged protein was localized to the mitochondria, Chr II from 742571-742155, reverse complement, Uncharacterized ORF
YJR039W	45.71	0.96	5	146.8029	1	YJR039W	YJR039W SGDID:S000003800,Hypothetical protein, Chr X from 503851-507216, Uncharacterized ORF
YDR408C	7.08	0.99	1	195.482	1	YDR408C	ADE8 SGDID:S000002816,Phosphoribosyl-glycinamide transformylase, catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway, Chr IV from 1288851-1288207, reverse complement, Verified ORF
YDL019C	54.138	0.86	15	333.1136	1	YDL019C	OSH2 SGDID:S000002177,Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability, Chr IV from 421511-417660, reverse complement, Verified ORF
YJR059W	27.64	0.96	1	48.5554	1	YJR059W	PTK2 SGDID:S000003820,Putative serine\threonine protein kinase involved in regulation of ion transport across plasma membrane; enhances spermine uptake, Chr X from 545702-548158, Verified ORF
YJL148W	11.57	0.95	2	229.5752	1	YJL148W	RPA34 SGDID:S000003684,RNA polymerase I subunit A34.5, Chr X from 140356-141057, Verified ORF
YOR095C	16.2	1.00	24	2071.1003	1	YOR095C	RKI1 SGDID:S000005621,Ribose-5-phosphate ketol-isomerase, catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway; participates in pyridoxine biosynthesis, Chr XV from 504329-503553, reverse complement, Verified ORF
YNL258C	32.63	0.71	5	152.0954	1	YNL258C	DSL1 SGDID:S000005202,Endoplasmic reticulum (ER)-localized peripheral membrane protein required for Golgi-to-ER retrograde traffic; component of the ER target site that interacts with coatomer, the major component of the COPI vesicle protein coat, Chr XIV from 160374-158110, reverse complement, Verified ORF
YPR159W	16.95	1.00	6	494.8646	1	YPR159W	KRE6 SGDID:S000006363,Protein required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; appears functionally redundant with Skn1p, Chr XVI from 857579-859741, Verified ORF
YMR198W	36.27	0.89	5	171.521	1	YMR198W	CIK1 SGDID:S000004811,Kinesin-associated protein required for both karyogamy and mitotic spindle organization, interacts stably and specifically with Kar3p and may function to target this kinesin to a specific cellular role; has similarity to Vik1p, Chr XIII from 659744-661528, Verified ORF
YKL112W	23.47	1.00	4	238.2603	1	YKL112W	ABF1 SGDID:S000001595,DNA binding protein with possible chromatin-reorganizing activity involved in transcriptional activation, gene silencing, and DNA replication and repair, Chr XI from 226214-228409, Verified ORF
YML086C	25.46	1.00	13	713.8218	1	YML086C	ALO1 SGDID:S000004551,D-Arabinono-1,4-lactone oxidase, catalyzes the final step in biosynthesis of D-erythroascorbic acid, which is protective against oxidative stress, Chr XIII from 97371-95791, reverse complement, Verified ORF
YHR089C	6.71	1.00	31	6458.6847	1	YHR089C	GAR1 SGDID:S000001131,Protein component of the H\ACA snoRNP pseudouridylase complex, involved in the modification and cleavage of the 18S pre-rRNA, Chr VIII from 283300-282683, reverse complement, Verified ORF
YMR116C	14.777	1.00	393	37180.1544	1	YMR116C	ASC1 SGDID:S000004722,WD repeat protein (G-beta like protein) involved in translation regulation; required for repression of Gcn4p activity in the absence of amino-acid starvation; core component of the ribosome; ortholog of mammalian RACK1, Chr XIII from 500687-500151,499877-499455, reverse complement, Verified ORF
YKR095W-A	5.47	0.90	7	1610.1195	1	YKR095W-A	YKR095W-A SGDID:S000028512,Protein of unknown function, conserved in Ashbya gossypii, Chr XI from 625506-625543,625619-625847, Uncharacterized ORF
YAL044C	5.09	1.00	53	14556.7022	1	YAL044C	GCV3 SGDID:S000000042,H subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm, Chr I from 58463-57951, reverse complement, Verified ORF
YOR122C	3.6	1.00	19	7378.2949	1	YOR122C	PFY1 SGDID:S000005648,Profilin, actin- and phosphatidylinositol 4,5-bisphosphate-binding protein, plays a role in cytoskeleton organization, required for normal timing of actin polymerization in response to thermal stress; localizes to plasma membrane and cytosol, Chr XV from 552888-552876,552666-552299, reverse complement, Verified ORF
YKL197C	39.98	0.97	1	33.9182	1	YKL197C	PEX1 SGDID:S000001680,AAA-family ATPase peroxin required for peroxisome biogenesis, contains two 230 amino acid ATP-binding AAA cassettes, upregulated in anaerobiosis; Pex1p and Pex6p interact via their N-terminal AAA-cassettes, Chr XI from 73870-70739, reverse complement, Verified ORF
YCL054W	34.07	1.00	5	205.1647	1	YCL054W	SPB1 SGDID:S000000559,AdoMet-dependent methyltransferase involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the putative tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants, Chr III from 31449-33974, Verified ORF
YNL268W	12.95	0.99	2	213.7471	1	YNL268W	LYP1 SGDID:S000005212,Lysine permease; one of three amino acid permeases (Alp1p, Can1p, Lyp1p) responsible for uptake of cationic amino acids, Chr XIV from 138551-140386, Verified ORF
YDL029W	17.41	1.00	33	2649.8426	1	YDL029W	ARP2 SGDID:S000002187,Essential component of the Arp2\3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity, Chr IV from 399337-399358,399482-400635, Verified ORF
YDR403W	22.208	0.95	5	299.0123	1	YDR403W	DIT1 SGDID:S000002811,Sporulation-specific enzyme required for spore wall maturation, involved in the production of a soluble LL-dityrosine-containing precursor of the spore wall; transcripts accumulate at the time of prospore enclosure, Chr IV from 1274594-1276204, Verified ORF
YOL121C	7.92	1.00	353	62309.5244	2	YNL302C,YOL121C	RPS19A SGDID:S000005481,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Bp and has similarity to rat S19 ribosomal protein, Chr XV from 92850-92831,92440-92026, reverse complement, Verified ORF
YLR420W	13.65	1.00	27	2765.2603	1	YLR420W	URA4 SGDID:S000004412,Dihydroorotase, catalyzes the third enzymatic step in the de novo biosynthesis of pyrimidines, converting carbamoyl-L-aspartate into dihydroorotate, Chr XII from 963782-964876, Verified ORF
YNL151C	11.12	0.99	1	124.4615	1	YNL151C	RPC31 SGDID:S000005095,RNA polymerase III subunit C31; contains HMG-like C-terminal domain, Chr XIV from 348523-347768, reverse complement, Verified ORF
YDL225W	29.33	0.95	3	135.8431	1	YDL225W	SHS1 SGDID:S000002384,One of five related septins (Cdc3p, Cdc10p, Cdc11p, Cdc12p, Shs1p) that form a cortical filamentous collar at the mother-bud neck which is necessary for normal morphogenesis and cytokinesis, Chr IV from 52446-54101, Verified ORF
YBR149W	19.16	1.00	9	656.6771	1	YBR149W	ARA1 SGDID:S000000353,Large subunit of NADP+ dependent arabinose dehydrogenase, involved in carbohydrate metabolism; small subunit is unidentified, Chr II from 539981-541015, Verified ORF
YCL016C	13.618	0.93	2	190.9433	1	YCL016C	DCC1 SGDID:S000000521,Subunit of a complex with Ctf8p and Ctf18p that shares some components with Replication Factor C, required for sister chromatid cohesion and telomere length maintenance, Chr III from 95763-94621, reverse complement, Verified ORF
YPL255W	24.318	0.93	7	374.2467	1	YPL255W	BBP1 SGDID:S000006176,Protein required for the spindle pole body (SPB) duplication, localized at the central plaque periphery; forms a complex with a nuclear envelope protein Mps2p and SPB components Spc29p and Kar1p; required for mitotic functions of Cdc5p, Chr XVI from 67725-68882, Verified ORF
YNL112W	22.84	1.00	42	2570.7396	1	YNL112W	DBP2 SGDID:S000005056,Essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing, Chr XIV from 413641-414913,415916-416283, Verified ORF
YCR072C	18.228	0.93	2	142.6523	1	YCR072C	RSA4 SGDID:S000000668,WD-repeat protein involved in ribosome biogenesis; required for maturation and efficient intra-nuclear transport or pre-60S ribosomal subunits, localizes to the nucleolus, Chr III from 242348-240801, reverse complement, Verified ORF
YKR093W	13.42	0.91	1	94.7968	1	YKR093W	PTR2 SGDID:S000001801,Integral membrane peptide transporter, mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p, Chr XI from 615372-617177, Verified ORF
YDR342C	10.45	1.00	21	2809.3633	2	YDR343C,YDR342C	HXT7 SGDID:S000002750,High-affinity glucose transporter of the major facilitator superfamily, nearly identical to Hxt6p, expressed at high basal levels relative to other HXTs, expression repressed by high glucose levels, Chr IV from 1155922-1154210, reverse complement, Verified ORF
YDR226W	17.14	1.00	163	13294.7966	1	YDR226W	ADK1 SGDID:S000002634,Adenylate kinase, required for purine metabolism; localized to the cytoplasm and the mitochondria; lacks cleavable signal sequence, Chr IV from 916482-917150, Verified ORF
YHL019C	21.33	0.98	1	64.2303	1	YHL019C	APM2 SGDID:S000001011,Protein of unknown function, homologous to the medium chain of mammalian clathrin-associated protein complex; involved in vesicular transport, Chr VIII from 69545-67728, reverse complement, Verified ORF
YDR471W	5.9	1.00	241	57104.4487	2	YHR010W,YDR471W	RPL27B SGDID:S000002879,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Ap and has similarity to rat L27 ribosomal protein, Chr IV from 1401762-1401792,1402177-1402556, Verified ORF
YJL080C	70.767	1.00	199	3931.2186	1	YJL080C	SCP160 SGDID:S000003616,Essential RNA-binding G protein effector of mating response pathway, predominantly associated with nuclear envelope and ER, interacts in mRNA-dependent manner with translating ribosomes via multiple KH domains, similar to vertebrate vigilins, Chr X from 289143-285475, reverse complement, Verified ORF
YOR380W	13.85	0.97	7	685.3697	1	YOR380W	RDR1 SGDID:S000005907,Transcriptional repressor involved in the control of multidrug resistance; negatively regulates expression of the PDR5 gene; member of the Gal4p family of zinc cluster proteins, Chr XV from 1051288-1052928, Verified ORF
YLR298C	10.26	0.98	3	400.5944	1	YLR298C	YHC1 SGDID:S000004289,Component of the U1 snRNP complex required for pre-mRNA splicing; putative ortholog of human U1C protein, which is involved in formation of a complex between U1 snRNP and the pre-mRNA 5' splice site, Chr XII from 725418-724723, reverse complement, Verified ORF
YFL044C	9.4	0.99	5	736.177	1	YFL044C	OTU1 SGDID:S000001850,Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p; may contribute to regulation of protein degradation by deubiquitylating substrates that have been ubiquitylated by Ufd2p; member of the Ovarian Tumor (OTU) family, Chr VI from 45560-44655, reverse complement, Verified ORF
YHR039C	23.98	0.99	7	404.007	1	YHR039C	MSC7 SGDID:S000001081,Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids, Chr VIII from 186802-184868, reverse complement, Verified ORF
YGR109W-B	66.118	0.99	8	167.4597	1	YGR109W-B	YGR109W-B SGDID:S000007347,TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition, Chr VII from 707614-708463,708465-712258, transposable_element_gene
YOR089C	12.52	0.93	2	207.689	1	YOR089C	VPS21 SGDID:S000005615,GTPase required for transport during endocytosis and for correct sorting of vacuolar hydrolases; localized in endocytic intermediates; detected in mitochondria; geranylgeranylation required for membrane association; mammalian Rab5 homolog, Chr XV from 490830-490198, reverse complement, Verified ORF
YJR117W	18.005	1.00	10	776.4469	1	YJR117W	STE24 SGDID:S000003878,Highly conserved zinc metalloprotease that functions in two steps of a-factor maturation, C-terminal CAAX proteolysis and the first step of N-terminal proteolytic processing; contains multiple transmembrane spans, Chr X from 641923-643284, Verified ORF
YBR245C	68.99	0.98	10	198.5842	1	YBR245C	ISW1 SGDID:S000000449,Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase that forms a complex with Ioc2p and Ioc4p to regulate transcription elongation, and a complex with Ioc3p to repress transcription initiation, Chr II from 711534-708145, reverse complement, Verified ORF
YIL009W	23.42	0.96	2	114.6091	1	YIL009W	FAA3 SGDID:S000001271,Long chain fatty acyl-CoA synthetase, has a preference for C16 and C18 fatty acids; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, Chr IX from 339341-341425, Verified ORF
YOR271C	12.82	0.97	3	317.329	1	YOR271C	YOR271C SGDID:S000005797,Hypothetical protein, Chr XV from 832041-831058, reverse complement, Uncharacterized ORF
YIL126W	63.988	0.97	12	254.3076	1	YIL126W	STH1 SGDID:S000001388,ATPase component of the ATP-dependent RSC chromatin remodeling complex required for kinetochore function in chromosome segregation; required for expression of early meiotic genes; essential helicase-related protein homologous to Snf2p, Chr IX from 117992-122071, Verified ORF
YLR048W	6.72	1.00	207	43063.1688	1	YLR048W	RPS0B SGDID:S000004038,Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal, Chr XII from 242233-242322,242682-243350, Verified ORF
YMR196W	53.066	0.95	3	75.0815	1	YMR196W	YMR196W SGDID:S000004809,Hypothetical protein, Chr XIII from 655075-658341, Uncharacterized ORF
YOR219C	37.6	1.00	4	148.7226	1	YOR219C	STE13 SGDID:S000005745,Dipeptidyl aminopeptidase, Golgi integral membrane protein that cleaves on the carboxyl side of repeating -X-Ala- sequences, required for maturation of alpha factor, transcription is induced by a-factor, Chr XV from 755010-752215, reverse complement, Verified ORF
YDR166C	43.63	0.87	5	139.3827	1	YDR166C	SEC5 SGDID:S000002573,Essential 107kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis, Chr IV from 789218-786303, reverse complement, Verified ORF
YLR299W	27.297	0.85	1	43.532	1	YLR299W	ECM38 SGDID:S000004290,Gamma-glutamyltranspeptidase, major glutathione-degrading enzyme; expression induced mainly by nitrogen starvation, Chr XII from 726071-728053, Verified ORF
YDR214W	17.37	0.93	4	299.3974	1	YDR214W	AHA1 SGDID:S000002622,Co-chaperone that binds to Hsp82p and activates its ATPase activity; similar to Hch1p; expression is regulated by stresses such as heat shock, Chr IV from 892872-893924, Verified ORF
YOR195W	55.747	0.77	7	135.1674	1	YOR195W	SLK19 SGDID:S000005721,Kinetochore-associated protein required for normal segregation of chromosomes in meiosis and mitosis; component of the FEAR regulatory network, which promotes Cdc14p release from the nucleolus during anaphase; potential Cdc28p substrate, Chr XV from 712867-715332, Verified ORF
YER114C	45.295	1.00	6	185.185	1	YER114C	BOI2 SGDID:S000000916,Protein implicated in polar growth, functionally redundant with Boi1p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain, Chr V from 393708-390586, reverse complement, Verified ORF
YDL194W	20.47	0.87	1	59.4163	1	YDL194W	SNF3 SGDID:S000002353,Plasma membrane glucose sensor that regulates glucose transport; has 12 predicted transmembrane segments; long cytoplasmic C-terminal tail is required for low glucose induction of hexose transporter genes HXT2 and HXT4, Chr IV from 111581-114235, Verified ORF
YIL076W	10.7	0.95	4	496.4833	1	YIL076W	SEC28 SGDID:S000001338,Epsilon-COP subunit of the coatomer; regulates retrograde Golgi-to-ER protein traffic; stabilizes Cop1p, the alpha-COP and the coatomer complex; non-essential for cell growth, Chr IX from 216655-217545, Verified ORF
YOR192C-C	3.75	0.81	1	301.9664	1	YOR192C-C	YOR192C-C SGDID:S000028857,Identified by expression profiling and mass spectrometry, Chr XV from 704225-703989, reverse complement, Uncharacterized ORF
YJL191W	6.6	1.00	177	37491.6231	2	YJL191W,YCR031C	RPS14B SGDID:S000003727,Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins, Chr X from 73786-73795,74204-74610, Verified ORF
YGR267C	10.94	1.00	13	1661.2345	1	YGR267C	FOL2 SGDID:S000003499,GTP-cyclohydrolase I, catalyzes the first step in the folic acid biosynthetic pathway, Chr VII from 1025741-1025010, reverse complement, Verified ORF
YIL002C	39.39	0.69	1	24.4888	1	YIL002C	INP51 SGDID:S000001264,Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in phosphatidylinositol 4,5-bisphosphate homeostasis and in endocytosis; null mutation confers cold-tolerant growth, Chr IX from 353428-350588, reverse complement, Verified ORF
YDR518W	15.43	0.99	3	269.0886	1	YDR518W	EUG1 SGDID:S000002926,Protein disulfide isomerase of the endoplasmic reticulum lumen, function overlaps with that of Pdi1p; may interact with nascent polypeptides in the ER, Chr IV from 1478600-1480153, Verified ORF
YGR185C	18.31	1.00	62	4733.782	1	YGR185C	TYS1 SGDID:S000003417,Cytoplasmic tyrosyl-tRNA synthetase, class I aminoacyl-tRNA synthetase that aminoacylates tRNA(Tyr), required for cytoplasmic protein synthesis, interacts with positions 34 and 35 of the anticodon of tRNATyr, Chr VII from 867525-866341, reverse complement, Verified ORF
YKR014C	15.147	0.99	3	274.1162	1	YKR014C	YPT52 SGDID:S000001722,GTPase, similar to Ypt51p and Ypt53p and to mammalian rab5; required for vacuolar protein sorting and endocytosis, Chr XI from 465714-465010, reverse complement, Verified ORF
YOR178C	30.028	0.89	1	41.4351	1	YOR178C	GAC1 SGDID:S000005704,Regulatory subunit for Glc7p type-1 protein phosphatase (PP1), tethers Glc7p to Gsy2p glycogen synthase, binds Hsf1p heat shock transcription factor, required for induction of some HSF-regulated genes under heat shock, Chr XV from 670242-667861, reverse complement, Verified ORF
YPL068C	8.67	1.00	36	5804.814	1	YPL068C	YPL068C SGDID:S000005989,Hypothetical protein, Chr XVI from 425093-424212, reverse complement, Uncharacterized ORF
YLR328W	17.77	1.00	8	629.372	1	YLR328W	NMA1 SGDID:S000004320,Nicotinic acid mononucleotide adenylyltransferase, involved in NAD(+) salvage pathway, Chr XII from 784913-786118, Verified ORF
YDL176W	24.042	0.89	2	103.5033	1	YDL176W	YDL176W SGDID:S000002335,Hypothetical protein, Chr IV from 142098-144224, Uncharacterized ORF
YDR487C	8.39	1.00	40	6665.0428	1	YDR487C	RIB3 SGDID:S000002895,3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase), required for riboflavin biosynthesis from ribulose-5-phosphate, also has an unrelated function in mitochondrial respiration, Chr IV from 1428972-1428346, reverse complement, Verified ORF
YJR077C	15.26	1.00	32	2931.5705	1	YJR077C	MIR1 SGDID:S000003838,Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria; functionally redundant with Pic2p but more abundant than Pic2 under normal conditions, Chr X from 578105-577170, reverse complement, Verified ORF
YNR013C	18.32	1.00	4	305.2385	1	YNR013C	PHO91 SGDID:S000005296,Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth, Chr XIV from 651714-649030, reverse complement, Verified ORF
YKR018C	31.68	1.00	5	220.6427	1	YKR018C	YKR018C SGDID:S000001726,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus, Chr XI from 475543-473366, reverse complement, Uncharacterized ORF
YFL005W	14.42	1.00	14	1357.2744	1	YFL005W	SEC4 SGDID:S000001889,Secretory vesicle-associated Rab GTPase essential for exocytosis; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane, Chr VI from 130329-130976, Verified ORF
YLR342W	56.129	1.00	132	3287.6951	1	YLR342W	FKS1 SGDID:S000004334,Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling, Chr XII from 809997-815627, Verified ORF
YGR275W	8.31	0.99	5	832.7393	1	YGR275W	RTT102 SGDID:S000003507,Component of both the SWI\SNF and RSC chromatin remodeling complexes, suggested role in chromosome maintenance; possible weak regulator of Ty1 transposition, Chr VII from 1043282-1043755, Verified ORF
YFL004W	47.258	1.00	46	1360.7783	1	YFL004W	VTC2 SGDID:S000001890,Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in protein localization and non-autophagic vacuolar fusion, Chr VI from 131805-134291, Verified ORF
YLR449W	13.2	1.00	33	3494.9818	1	YLR449W	FPR4 SGDID:S000004441,Nuclear protein, putative peptidyl-prolyl cis-trans isomerase (PPIase) with similarity to Fpr3p; overproduction suppresses the growth defect resulting from the absence of E3 ubiquitin-protein ligase Tom1p, Chr XII from 1030830-1032008, Verified ORF
YNL290W	21.488	1.00	3	195.1776	1	YNL290W	RFC3 SGDID:S000005234,Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon, Chr XIV from 86218-87240, Verified ORF
YLR277C	31.827	0.98	5	215.2312	1	YLR277C	YSH1 SGDID:S000004267,Putative endonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex required for 3' processing of mRNAs, Chr XII from 699497-697158, reverse complement, Verified ORF
YHR166C	22	0.93	24	1418.3271	1	YHR166C	CDC23 SGDID:S000001209,Subunit of the anaphase-promoting complex\cyclosome (APC\C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase\anaphase transition, Chr VIII from 439052-437172, reverse complement, Verified ORF
YDL007W	21.88	1.00	27	1725.1281	1	YDL007W	RPT2 SGDID:S000002165,One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for normal peptide hydrolysis by the core 20S particle, Chr IV from 438044-439357, Verified ORF
YPL225W	8.93	1.00	7	1095.8509	1	YPL225W	YPL225W SGDID:S000006146,Hypothetical protein, Chr XVI from 126006-126446, Uncharacterized ORF
YDR358W	25.613	0.94	17	872.2103	1	YDR358W	GGA1 SGDID:S000002766,Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi, Chr IV from 1190052-1191725, Verified ORF
YFR052W	15.16	1.00	10	922.1587	1	YFR052W	RPN12 SGDID:S000001948,Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p, Chr VI from 252492-253316, Verified ORF
YGR203W	6.17	0.87	7	1379.8664	1	YGR203W	YGR203W SGDID:S000003435,Putative protein with sequence similarity to protein tyrosine phosphatases of the CDC25-like phosphatase family; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus, Chr VII from 905242-905688, Uncharacterized ORF
YJR036C	42.747	0.99	11	356.1452	1	YJR036C	HUL4 SGDID:S000003797,Protein with similarity to hect domain E3 ubiquitin-protein ligases, not essential for viability, Chr X from 503306-500628, reverse complement, Verified ORF
YPL218W	13.478	1.00	72	7468.1315	1	YPL218W	SAR1 SGDID:S000006139,GTPase, GTP-binding protein of the ARF family, component of COPII coat of vesicles; required for transport vesicle formation during ER to Golgi protein transport, Chr XVI from 138697-138724,138864-139408, Verified ORF
YLL005C	34.67	0.84	3	101.6135	1	YLL005C	SPO75 SGDID:S000003928,Meiosis-specific protein of unknown function, required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis, Chr XII from 140545-137939, reverse complement, Verified ORF
YPR037C	6.78	0.87	6	1076.3306	1	YPR037C	ERV2 SGDID:S000006241,Flavin-linked sulfhydryl oxidase localized to the endoplasmic reticulum lumen, involved in disulfide bond formation within the ER, Chr XVI from 647035-646445, reverse complement, Verified ORF
YJL145W	16.54	0.97	1	81.9862	1	YJL145W	SFH5 SGDID:S000003681,Putative phosphatidylinositol transfer protein (PITP), exhibits phosphatidylinositol- but not phosphatidylcholine-transfer activity, mainly localized to cytosol and microsomes, similar to Sec14p; may be PITP regulator rather than actual PITP, Chr X from 145079-145963, Verified ORF
YML008C	16.32	1.00	85	7281.2121	1	YML008C	ERG6 SGDID:S000004467,Delta(24)-sterol C-methyltransferase, converts zymosterol to fecosterol in the ergosterol biosynthetic pathway by methylating position C-24; localized to both lipid particles and mitochondrial outer membrane, Chr XIII from 252990-251839, reverse complement, Verified ORF
YHR098C	25.05	0.96	4	214.303	1	YHR098C	SFB3 SGDID:S000001140,Member of the Sec24p family; forms a complex, with Sec23p, that is involved in sorting of Pma1p into COPII vesicles; peripheral ER membrane protein; potential Cdc28p substrate, Chr VIII from 301937-299148, reverse complement, Verified ORF
YLR206W	18.65	1.00	7	524.7157	1	YLR206W	ENT2 SGDID:S000004196,Epsin-like protein required for endocytosis and actin patch assembly and functionally redundant with Ent1p; contains clathrin-binding motif at C-terminus, Chr XII from 554580-556421, Verified ORF
YOR244W	22.528	0.90	2	111.7004	1	YOR244W	ESA1 SGDID:S000005770,Histone acetyltransferase catalytic subunit of the native multisubunit complex (NuA4) that acetylates four conserved internal lysines of histone H4 N-terminal tail; required for cell cycle progression, Chr XV from 792532-793869, Verified ORF
YMR314W	12.495	1.00	24	2685.2201	1	YMR314W	PRE5 SGDID:S000004931,20S proteasome alpha-type subunit, Chr XIII from 901708-902412, Verified ORF
YHR190W	17.32	1.00	10	807.1551	1	YHR190W	ERG9 SGDID:S000001233,Farnesyl-diphosphate farnesyl transferase (squalene synthase), joins two farnesyl pyrophosphate moieties to form squalene in the sterol biosynthesis pathway, Chr VIII from 484845-486179, Verified ORF
YLR386W	30.198	1.00	4	185.1768	1	YLR386W	VAC14 SGDID:S000004378,Protein involved in regulated synthesis of PtdIns(3,5)P(2), in control of trafficking of some proteins to the vacuole lumen via the MVB, and in maintenance of vacuole size and acidity; activator of Fab1p, Chr XII from 893628-896270, Verified ORF
YPR035W	8.97	0.90	6	841.6009	1	YPR035W	GLN1 SGDID:S000006239,Glutamine synthetase (GS), synthesizes glutamine from glutamate and ammonia; with Glt1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source and by amino acid limitation, Chr XVI from 642205-643317, Verified ORF
YMR015C	20.369	0.86	1	59.0246	1	YMR015C	ERG5 SGDID:S000004617,C-22 sterol desaturase, a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs, Chr XIII from 302484-300868, reverse complement, Verified ORF
YPR145W	25.159	1.00	144	8001.5482	1	YPR145W	ASN1 SGDID:S000006349,Asparagine synthetase, isozyme of Asn2p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway, Chr XVI from 822616-824334, Verified ORF
YFL014W	6.94	1.00	4	805.7594	1	YFL014W	HSP12 SGDID:S000001880,Plasma membrane localized protein that protects membranes from desiccation; induced by heat shock, oxidative stress, osmostress, stationary phase entry, glucose depletion, oleate and alcohol; regulated by the HOG and Ras-Pka pathways, Chr VI from 107250-107579, Verified ORF
YKL078W	34.57	1.00	9	363.9552	1	YKL078W	DHR2 SGDID:S000001561,Predominantly nucleolar DEAH-box RNA helicase, required for 18S rRNA synthesis, Chr XI from 288489-290696, Verified ORF
YDR155C	8.665	1.00	183	29524.832	1	YDR155C	CPR1 SGDID:S000002562,Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A, Chr IV from 768997-768509, reverse complement, Verified ORF
YBR112C	22.199	1.00	15	944.6322	1	YBR112C	CYC8 SGDID:S000000316,General transcriptional co-repressor, acts together with Tup1p; also acts as part of a transcriptional co-activator complex that recruits the SWI\SNF and SAGA complexes to promoters, Chr II from 465764-462864, reverse complement, Verified ORF
YER133W	11.64	0.99	6	713.4086	1	YER133W	GLC7 SGDID:S000000935,Catalytic subunit of type 1 serine\threonine protein phosphatase, involved in many processes including glycogen metabolism, sporulation, and mitosis; interacts with multiple regulatory subunits; predominantly isolated with Sds22p, Chr V from 432491-432667,433193-433954, Verified ORF
YNL247W	40.96	1.00	37	1262.8352	1	YNL247W	YNL247W SGDID:S000005191,Protein required for cell viability, Chr XIV from 182876-185179, Uncharacterized ORF
YBR248C	33.26	1.00	29	1218.9353	1	YBR248C	HIS7 SGDID:S000000452,Imidazole glycerol phosphate synthase (glutamine amidotransferase:cyclase), catalyzes the fifth and sixth steps of histidine biosynthesis and also produces 5-aminoimidazole-4-carboxamide ribotide (AICAR), a purine precursor, Chr II from 716460-714802, reverse complement, Verified ORF
YPL222W	32.52	0.99	35	1489.5586	1	YPL222W	YPL222W SGDID:S000006143,The authentic, non-tagged protein was localized to the mitochondria., Chr XVI from 130161-132227, Uncharacterized ORF
YGR180C	20.3	1.00	129	8883.7961	1	YGR180C	RNR4 SGDID:S000003412,Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits, Chr VII from 856306-855269, reverse complement, Verified ORF
YHR049W	13.288	1.00	29	3051.0076	1	YHR049W	FSH1 SGDID:S000001091,Serine hydrolase that localizes to both the nucleus and cytoplasm; sequence is similar to Fsh2p and Fsh3p, Chr VIII from 206455-207186, Verified ORF
YLL004W	31.34	0.68	3	90.9988	1	YLL004W	ORC3 SGDID:S000003927,Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing, Chr XII from 141072-142922, Verified ORF
YBL052C	28.81	0.87	13	548.8128	1	YBL052C	SAS3 SGDID:S000000148,Histone acetyltransferase catalytic subunit of NuA3 complex that acetylates histone H3, involved in transcriptional silencing; homolog of the mammalian MOZ proto-oncogene; sas3 gcn5 double mutation confers lethality, Chr II from 121877-119382, reverse complement, Verified ORF
YCL045C	22.386	1.00	6	374.6965	1	YCL045C	YCL045C SGDID:S000000550,Hypothetical protein, Chr III from 46905-44623, reverse complement, Uncharacterized ORF
YDL135C	13.597	1.00	10	1028.1626	1	YDL135C	RDI1 SGDID:S000002294,Rho GDP dissociation inhibitor involved in the localization and regulation of Cdc42p, Chr IV from 219288-218680, reverse complement, Verified ORF
YMR237W	23.298	1.00	4	240.0193	1	YMR237W	YMR237W SGDID:S000004850,Protein that colocalizes with clathrin-coated vesicles; involved in transport at the trans-Golgi, Chr XIII from 743748-745922, Uncharacterized ORF
YDL197C	23.98	0.99	2	115.4305	1	YDL197C	ASF2 SGDID:S000002356,Anti-silencing protein that causes derepression of silent loci when overexpressed, Chr IV from 106495-104918, reverse complement, Verified ORF
YNL244C	6.66	1.00	32	6717.0821	1	YNL244C	SUI1 SGDID:S000005188,Translation initiation factor eIF1; component of a complex involved in recognition of the initiator codon; modulates translation accuracy at the initiation phase, Chr XIV from 187497-187171, reverse complement, Verified ORF
YJL111W	27.457	1.00	72	3665.9313	1	YJL111W	CCT7 SGDID:S000003647,Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo, Chr X from 207795-209447, Verified ORF
YOR093C	70.047	1.00	22	439.0743	1	YOR093C	YOR093C SGDID:S000005619,Hypothetical protein, Chr XV from 502453-497507, reverse complement, Uncharacterized ORF
YER086W	28.69	1.00	46	2241.4662	1	YER086W	ILV1 SGDID:S000000888,Threonine deaminase, catalyzes the first step in isoleucine biosynthesis; expression is under general amino acid control; ILV1 locus exhibits highly positioned nucleosomes whose organization is independent of known ILV1 regulation, Chr V from 328473-330203, Verified ORF
YNL135C	8.14	1.00	44	7556.7174	1	YNL135C	FPR1 SGDID:S000005079,Peptidyl-prolyl cis-trans isomerase (PPIase), binds to the drugs FK506 and rapamycin; also binds to the nonhistone chromatin binding protein Hmo1p and may regulate its assembly or function, Chr XIV from 372228-371884, reverse complement, Verified ORF
YHL015W	7.31	1.00	104	19889.363	1	YHL015W	RPS20 SGDID:S000001007,Protein component of the small (40S) ribosomal subunit; overproduction suppresses mutations affecting RNA polymerase III-dependent transcription; has similarity to E. coli S10 and rat S20 ribosomal proteins, Chr VIII from 75409-75774, Verified ORF
YDR529C	7.42	0.99	1	186.5246	1	YDR529C	QCR7 SGDID:S000002937,Subunit 7 of the ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inner membrane electron transport chain; oriented facing the mitochondrial matrix; N-terminus appears to play a role in complex assembly, Chr IV from 1496540-1496157, reverse complement, Verified ORF
YBR072W	10.93	1.00	60	7674.251	1	YBR072W	HSP26 SGDID:S000000276,Small heat shock protein with chaperone activity that is regulated by a heat induced transition from an inactive oligomeric (24-mer) complex to an active dimer; induced by heat, upon entry into stationary phase, and during sporulation, Chr II from 382027-382671, Verified ORF
YNL284C-B	59.63	1.00	24	562.6668	1	YNL284C-B	YNL284C-B SGDID:S000007387,TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition, Chr XIV from 102232-100928,100926-96964, reverse complement, transposable_element_gene
YML071C	34.03	0.98	5	201.2978	1	YML071C	COG8 SGDID:S000004536,Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments, Chr XIII from 131572-129749, reverse complement, Verified ORF
YCL024W	50.14	0.95	7	185.4138	1	YCL024W	KCC4 SGDID:S000000529,Protein kinase of the bud neck involved in the septin checkpoint, associates with septin proteins, negatively regulates Swe1p by phosphorylation, shows structural homology to bud neck kinases Gin4p and Hsl1p, Chr III from 79162-82275, Verified ORF
YPR184W	62.568	1.00	9	201.0921	1	YPR184W	GDB1 SGDID:S000006388,Glycogen debranching enzyme containing glucanotranferase and alpha-1,6-amyloglucosidase activities, required for glycogen degradation, Chr XVI from 902040-906650, Verified ORF
YGR193C	22.45	1.00	24	1494.5133	1	YGR193C	PDX1 SGDID:S000003425,Dihydrolipoamide dehydrogenase (E3)-binding protein (E3BP) of the mitochondrial pyruvate dehydrogenase (PDH) complex, plays a structural role in the complex by binding and positioning E3 to the dihydrolipoamide acetyltransferase (E2) core, Chr VII from 885746-884514, reverse complement, Verified ORF
YMR130W	14.17	0.98	2	193.3709	1	YMR130W	YMR130W SGDID:S000004737,Hypothetical protein, Chr XIII from 532118-533026, Uncharacterized ORF
YMR260C	4.73	1.00	45	13300.1422	1	YMR260C	TIF11 SGDID:S000004873,Translation initiation factor eIF1A, essential protein that forms a complex with Sui1p (eIF1) and the 40S ribosomal subunit and scans for the start codon; C-terminus associates with Fun12p (eIF5B); N terminus interacts with eIF2 and eIF3, Chr XIII from 789838-789377, reverse complement, Verified ORF
YDR481C	17.4	1.00	5	401.722	1	YDR481C	PHO8 SGDID:S000002889,Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides, Chr IV from 1420242-1418542, reverse complement, Verified ORF
YBR035C	11.66	0.97	4	465.1982	1	YBR035C	PDX3 SGDID:S000000239,Pyridoxine (pyridoxamine) phosphate oxidase, has homologs in E. coli and Myxococcus xanthus; transcription is under the general control of nitrogen metabolism , Chr II from 306955-306269, reverse complement, Verified ORF
YCR002C	14.41	0.99	2	192.0906	1	YCR002C	CDC10 SGDID:S000000595,Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM, Chr III from 118346-117378, reverse complement, Verified ORF
YGL232W	16.08	0.69	1	59.9884	1	YGL232W	TAN1 SGDID:S000003201,Putative tRNA acetyltransferase, RNA-binding protein required for the formation of the modified nucleoside N(4)-acetylcytidine in serine and leucine tRNAs but not required for the same modification in 18S rRNA, Chr VII from 62075-62131,62190-63002, Verified ORF
YFR037C	27.389	0.99	8	404.2536	1	YFR037C	RSC8 SGDID:S000001933,One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; essential for viability and mitotic growth; homolog of SWI\SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters, Chr VI from 229173-227500, reverse complement, Verified ORF
YAL016W	21.68	1.00	18	1160.695	1	YAL016W	TPD3 SGDID:S000000014,Regulatory subunit A of the heterotrimeric protein phosphatase 2A, which also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and for transcription by RNA polymerase III, Chr I from 124880-126787, Verified ORF
YLR264W	3.33	1.00	50	20990.8818	2	YLR264W,YOR167C	RPS28B SGDID:S000004254,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein, Chr XII from 673133-673336, Verified ORF
YLR135W	26.18	1.00	10	533.9926	1	YLR135W	SLX4 SGDID:S000004125,Subunit of a complex, with Slx1p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p, Chr XII from 413282-415528, Verified ORF
YML072C	66.105	1.00	46	972.8109	1	YML072C	TCB3 SGDID:S000004537,Contains three calcium and lipid binding domains; localized to the bud; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; mRNA is targeted to the bud via the mRNA transport system involving She2p; C-terminal portion of Tcb1p, Tcb2p and Tcb3p interact, Chr XIII from 129367-124730, reverse complement, Verified ORF
YPL153C	29.498	0.76	11	396.2037	1	YPL153C	RAD53 SGDID:S000006074,Protein kinase, required for cell-cycle arrest in response to DNA damage; activated by trans autophosphorylation when interacting with hyperphosphorylated Rad9p, Chr XVI from 264191-261726, reverse complement, Verified ORF
YKL017C	27.939	1.00	15	750.5598	1	YKL017C	HCS1 SGDID:S000001500,Hexameric DNA polymerase alpha-associated DNA helicase A involved in lagging strand DNA synthesis; contains single-stranded DNA stimulated ATPase and dATPase activities; replication protein A stimulates helicase and ATPase activities, Chr XI from 406884-404833, reverse complement, Verified ORF
YDL072C	9.76	0.66	1	94.5363	1	YDL072C	YDL072C SGDID:S000002230,Endoplasmic reticulum transmembrane protein, homolog of human BAP31 protein, Chr IV from 330447-329836, reverse complement, Uncharacterized ORF
YPL190C	17.76	0.87	3	205.4482	1	YPL190C	NAB3 SGDID:S000006111,Single stranded DNA binding protein; acidic ribonucleoprotein; required for termination of non-poly(A) transcripts and efficient splicing; interacts with Nrd1p, Chr XVI from 187724-185316, reverse complement, Verified ORF
YBR283C	8.43	1.00	20	3316.7087	1	YBR283C	SSH1 SGDID:S000000487,Subunit of the Ssh1 translocon complex; Sec61p homolog involved in co-translational pathway of protein translocation; not essential, Chr II from 770411-768939, reverse complement, Verified ORF
YOR209C	23.378	1.00	26	1554.787	1	YOR209C	NPT1 SGDID:S000005735,Nicotinate phosphoribosyltransferase, acts in the salvage pathway of NAD+ biosynthesis; required for silencing at rDNA and telomeres and has a role in silencing at mating-type loci; localized to the nucleus, Chr XV from 737727-736438, reverse complement, Verified ORF
YGR196C	38.408	1.00	8	291.1878	1	YGR196C	FYV8 SGDID:S000003428,Protein of unknown function, required for survival upon exposure to K1 killer toxin, Chr VII from 892191-889738, reverse complement, Verified ORF
YMR152W	14.6	0.95	2	181.9305	1	YMR152W	YIM1 SGDID:S000004760,Protein of unknown function; proposed to be involved in responding to DNA damaging agents, Chr XIII from 563095-564192, Verified ORF
YBR023C	41.815	1.00	13	434.6264	1	YBR023C	CHS3 SGDID:S000000227,Chitin synthase III, catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan, Chr II from 287925-284428, reverse complement, Verified ORF
YNL083W	27.48	0.86	5	218.7543	1	YNL083W	SAL1 SGDID:S000005027,Probable transporter, member of the Ca2+-binding subfamily of the mitochondrial carrier family, with two EF-hand motifs; Pet9p and Sal1p have an overlapping function critical for viability; polymorphic in different S. cerevisiae strains, Chr XIV from 471379-473016, Verified ORF
YMR061W	34.13	1.00	7	286.7257	1	YMR061W	RNA14 SGDID:S000004665,Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of mRNA 3' ends; bridges interaction between Rna15p and Hrp1p in the CF I complex, Chr XIII from 392754-394787, Verified ORF
YBR069C	14.36	1.00	7	681.4727	1	YBR069C	TAT1 SGDID:S000000273,Amino acid transport protein for valine, leucine, isoleucine, and tyrosine, low-affinity tryptophan and histidine transporter; overexpression confers FK506 resistance, Chr II from 378430-376571, reverse complement, Verified ORF
YPL117C	9.89	0.99	20	2798.8125	1	YPL117C	IDI1 SGDID:S000006038,Isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP isomerase), catalyzes an essential activation step in the isoprenoid biosynthetic pathway; required for viability, Chr XVI from 328729-327863, reverse complement, Verified ORF
YML073C	11.61	1.00	159	19145.6368	1	YML073C	RPL6A SGDID:S000004538,N-terminally acetylated protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA, Chr XIII from 124172-124158,123742-123227, reverse complement, Verified ORF
YDR513W	7.39	1.00	22	4161.8186	1	YDR513W	GRX2 SGDID:S000002921,Cytoplasmic glutaredoxin, thioltransferase, glutathione-dependent disulfide oxidoreductase involved in maintaining redox state of target proteins, also exhibits glutathione peroxidase activity, expression induced in response to stress, Chr IV from 1471009-1471440, Verified ORF
YJR030C	30.75	0.86	4	156.3933	1	YJR030C	YJR030C SGDID:S000003791,Putative protein of unknown function; expression repressed in carbon limited vs carbon replete chemostat cultures; YJR030C is a non-essential gene, Chr X from 486111-483874, reverse complement, Uncharacterized ORF
YOR311C	6.38	0.99	1	216.9299	1	YOR311C	HSD1 SGDID:S000005838,Endoplasmic reticulum (ER)-resident membrane protein, overproduction induces enlargement of ER-like membrane structures and suppresses a temperature-sensitive sly1 mutation, Chr XV from 899925-899053, reverse complement, Verified ORF
YPR069C	15.8	1.00	129	11413.9912	1	YPR069C	SPE3 SGDID:S000006273,Spermidine synthase, involved in biosynthesis of spermidine and also in biosynthesis of pantothenic acid; spermidine is required for growth of wild-type cells, Chr XVI from 685434-684553, reverse complement, Verified ORF
YMR293C	24.99	0.78	1	43.6348	1	YMR293C	YMR293C SGDID:S000004907,protein similar to bacterial glutamyl-tRNA amidotransferases, Chr XIII from 856792-855398, reverse complement, Uncharacterized ORF
YPL143W	6.12	1.00	95	21700.8675	1	YPL143W	RPL33A SGDID:S000006064,N-terminally acetylated ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Bp and has similarity to rat L35a; rpl33a null mutant exhibits slow growth while rpl33a rpl33b double null mutant is inviable, Chr XVI from 282121-282139,282665-282969, Verified ORF
YNL064C	19.042	1.00	154	11306.1065	1	YNL064C	YDJ1 SGDID:S000005008,Protein chaperone involved in regulation of the HSP90 and HSP70 functions; involved in protein translocation across membranes; member of the DnaJ family, Chr XIV from 507098-505869, reverse complement, Verified ORF
YIR026C	16.439	1.00	4	340.1649	1	YIR026C	YVH1 SGDID:S000001465,Protein phosphatase involved in vegetative growth at low temperatures, sporulation, and glycogen accumulation; transcription induced by low temperature and nitrogen starvation; member of the dual-specificity family of protein phosphatases, Chr IX from 405964-404870, reverse complement, Verified ORF
YCL031C	7.99	0.89	3	467.164	1	YCL031C	RRP7 SGDID:S000000536,Essential protein involved in rRNA processing and ribosome biogenesis, Chr III from 65568-64675, reverse complement, Verified ORF
YJR106W	9.71	0.97	1	139.6552	1	YJR106W	ECM27 SGDID:S000003867,Non-essential protein of unknown function, Chr X from 624752-626929, Verified ORF
YGL151W	43.341	0.92	3	89.0256	1	YGL151W	NUT1 SGDID:S000003119,Component of the RNA polymerase II mediator complex, which is required for transcriptional activation and also has a role in basal transcription, Chr VII from 217529-220927, Verified ORF
YER102W	7.82	1.00	290	51843.7201	2	YER102W,YBL072C	RPS8B SGDID:S000000904,Protein component of the small (40S) ribosomal subunit; identical to Rps8Bp and has similarity to rat S8 ribosomal protein, Chr V from 363096-363698, Verified ORF
YJR053W	24.28	0.86	2	99.034	1	YJR053W	BFA1 SGDID:S000003814,Component of the GTPase-activating Bfa1p-Bub2p complex involved in multiple cell cycle checkpoint pathways that control exit from mitosis, Chr X from 533942-535666, Verified ORF
YKL120W	14.64	1.00	11	1050.4043	1	YKL120W	OAC1 SGDID:S000001603,Mitochondrial inner membrane transporter, transports oxaloacetate, sulfate, and thiosulfate; member of the mitochondrial carrier family, Chr XI from 216988-217962, Verified ORF
YMR142C	7.38	1.00	170	32203.0845	1	YMR142C	RPL13B SGDID:S000004750,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein, Chr XIII from 551206-551203,550800-550205, reverse complement, Verified ORF
YDL040C	48.42	1.00	18	519.6998	1	YDL040C	NAT1 SGDID:S000002198,Subunit of the N-terminal acetyltransferase NatA (Nat1p, Ard1p, Nat5p); N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing, Chr IV from 381435-378871, reverse complement, Verified ORF
YAL036C	18.24	1.00	6	459.866	1	YAL036C	RBG1 SGDID:S000000034,Member of the DRG family of GTP-binding proteins; interacts with translating ribosomes, Chr I from 76153-75044, reverse complement, Verified ORF
YDR488C	18.2	1.00	5	384.0639	1	YDR488C	PAC11 SGDID:S000002896,Dynein intermediate chain, acts in the cytoplasmic dynein pathway, forms cortical cytoplasmic microtubule capture site with Num1p; null mutant is defective in nuclear migration, essential in the absence of CIN8, Chr IV from 1430781-1429180, reverse complement, Verified ORF
YPL019C	45.683	1.00	149	4559.703	1	YPL019C	VTC3 SGDID:S000005940,Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion, Chr XVI from 517016-514509, reverse complement, Verified ORF
YJL167W	12.468	1.00	78	8745.864	1	YJL167W	ERG20 SGDID:S000003703,Farnesyl pyrophosphate synthetase, has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis, Chr X from 105008-106066, Verified ORF
YOR198C	22.57	1.00	53	3282.8362	1	YOR198C	BFR1 SGDID:S000005724,Component of mRNP complexes associated with polyribosomes; implicated in secretion and nuclear segregation; multicopy suppressor of BFA (Brefeldin A) sensitivity, Chr XV from 720066-718654, reverse complement, Verified ORF
YPL085W	77.65	1.00	27	486.1017	1	YPL085W	SEC16 SGDID:S000006006,COPII vesicle coat protein required for ER transport vesicle budding and autophagosome formation; Sec16p is bound to the periphery of ER membranes and may act to stabilize initial COPII complexes; interacts with Sec23p, Sec24p and Sec31p, Chr XVI from 387064-393651, Verified ORF
YOR308C	25.48	0.99	3	162.9528	1	YOR308C	SNU66 SGDID:S000005835,Component of the U4\U6.U5 snRNP complex involved in pre-mRNA splicing via spliceosome; has homology to human SART-1 and to an S. pombe protein; snu66 null mutation confers cold-sensitivity but is not lethal at normal growth temperatures, Chr XV from 896384-894621, reverse complement, Verified ORF
YLR014C	42.237	1.00	13	430.284	1	YLR014C	PPR1 SGDID:S000004004,Zinc finger transcription factor containing a Zn(2)-Cys(6) binuclear cluster domain, positively regulates transcription of genes involved in uracil biosynthesis; activity may be modulated by interaction with Tup1p, Chr XII from 174981-172267, reverse complement, Verified ORF
YHR195W	18.5	1.00	7	528.9702	1	YHR195W	NVJ1 SGDID:S000001238,Nuclear envelope protein that interacts with the vacuolar membrane protein Vac8p to promote formation of nucleus-vacuole junctions during piecemeal microautophagy of the nucleus (PMN), Chr VIII from 490747-491712, Verified ORF
YEL051W	5.51	1.00	6	1522.3151	1	YEL051W	VMA8 SGDID:S000000777,Subunit D of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; plays a role in the coupling of proton transport and ATP hydrolysis, Chr V from 58378-59148, Verified ORF
YPL195W	51.73	1.00	4	108.0991	1	YPL195W	APL5 SGDID:S000006116,Delta adaptin-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway, suppressor of loss of casein kinase 1 function, Chr XVI from 176222-179020, Verified ORF
YMR165C	33.428	1.00	15	627.3151	1	YMR165C	PAH1 SGDID:S000004775,Mg sup 2+ \sup -dependent phosphatidate (PA) phosphatase, catalyzes the dephosphorylation of PA to yield diacylglycerol and P sub i \sub , responsible for de novo lipid synthesis; homologous to mammalian lipin 1, Chr XIII from 592627-590039, reverse complement, Verified ORF
YGL241W	33.307	0.99	4	166.2128	1	YGL241W	KAP114 SGDID:S000003210,Karyopherin, responsible for nuclear import of Spt15p, histones H2A and H2B, and Nap1p; amino terminus shows similarity to those of other importins, particularly Cse1p; localization is primarily nuclear, Chr VII from 45445-48459, Verified ORF
YGR237C	32.02	1.00	8	349.2798	1	YGR237C	YGR237C SGDID:S000003469,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, Chr VII from 965660-963303, reverse complement, Uncharacterized ORF
YHR143W-A	2.05	0.99	14	9451.7947	1	YHR143W-A	RPC10 SGDID:S000001185,RNA polymerase subunit, found in RNA polymerase complexes I, II, and III, Chr VIII from 387236-387448, Verified ORF
YMR106C	22.66	0.82	1	50.5893	1	YMR106C	YKU80 SGDID:S000004712,Subunit of the telomeric Ku complex (Yku70p-Yku80p), involved in telomere length maintenance, structure and telomere position effect; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair, Chr XIII from 480189-478300, reverse complement, Verified ORF
YJR010W	19.01	0.99	5	364.0223	1	YJR010W	MET3 SGDID:S000003771,ATP sulfurylase, catalyzes the primary step of intracellular sulfate activation, essential for assimilatory reduction of sulfate to sulfide, involved in methionine metabolism, Chr X from 456154-457689, Verified ORF
YLL050C	8.67	1.00	98	15801.9939	1	YLL050C	COF1 SGDID:S000003973,Cofilin, promotes actin filament depolarization in a pH-dependent manner; binds both actin monomers and filaments and severs filaments , thought to be regulated by phosphorylation at SER4, ubiquitous and essential in eukaryotes, Chr XII from 40413-40400,40220-39803, reverse complement, Verified ORF
YBR202W	38.985	0.86	6	185.0363	1	YBR202W	CDC47 SGDID:S000000406,Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase, Chr II from 625767-628304, Verified ORF
YMR002W	1.07	0.99	4	5173.8796	1	YMR002W	YMR002W SGDID:S000004604,Hypothetical protein, Chr XIII from 272193-272663, Uncharacterized ORF
YCR021C	6.11	0.87	2	398.119	1	YCR021C	HSP30 SGDID:S000000615,Hydrophobic plasma membrane localized, stress-responsive protein that negatively regulates the H(+)-ATPase Pma1p; induced by heat shock, ethanol treatment, weak organic acid, glucose limitation, and entry into stationary phase, Chr III from 157103-156105, reverse complement, Verified ORF
YJL130C	98.368	1.00	422	5997.4069	1	YJL130C	URA2 SGDID:S000003666,Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase), catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP, Chr X from 172286-165642, reverse complement, Verified ORF
YHR063C	16.63	0.99	3	249.6715	1	YHR063C	PAN5 SGDID:S000001105,2-dehydropantoate 2-reductase, part of the pantothenic acid pathway, structurally homologous to E. coli panE, Chr VIII from 225171-224032, reverse complement, Verified ORF
YGR133W	6.82	0.81	14	2324.5216	1	YGR133W	PEX4 SGDID:S000003365,Peroxisomal ubiquitin conjugating enzyme required for peroxisomal matrix protein import and peroxisome biogenesis, Chr VII from 756901-757452, Verified ORF
YDR122W	47.158	0.69	2	40.9099	1	YDR122W	KIN1 SGDID:S000002529,Serine\threonine protein kinase involved in regulation of exocytosis; localizes to the cytoplasmic face of the plasma membrane; closely related to Kin2p, Chr IV from 694697-697891, Verified ORF
YDR023W	22.539	1.00	199	12343.0743	1	YDR023W	SES1 SGDID:S000002430,Cytosolic seryl-tRNA synthetase, class II aminoacyl-tRNA synthetase that aminoacylates tRNA(Ser), displays tRNA-dependent amino acid recognition which enhances discrimination of the serine substrate, interacts with peroxin Pex21p, Chr IV from 489505-490893, Verified ORF
YNL256W	34.07	0.93	5	190.8032	1	YNL256W	FOL1 SGDID:S000005200,Multifunctional enzyme of the folic acid biosynthesis pathway, has dihydropteroate synthetase, dihydro-6-hydroxymethylpterin pyrophosphokinase, and dihydroneopterin aldolase activities, Chr XIV from 164624-167098, Verified ORF
YML100W	37.682	0.98	10	363.5775	1	YML100W	TSL1 SGDID:S000004566,Large subunit of trehalose 6-phosphate synthase (Tps1p)\phosphatase (Tps2p) complex, which converts uridine-5'-diphosphoglucose and glucose 6-phosphate to trehalose, homologous to Tps3p and may share function, Chr XIII from 70624-73920, Verified ORF
YOL063C	27.45	0.90	4	183.3433	1	YOL063C	CRT10 SGDID:S000005424,Protein required for normal hydroxyurea resistance; one of constitutive RNR transcription (CRT) regulators, Chr XV from 210265-207392, reverse complement, Verified ORF
YGL049C	33.269	0.99	2	83.2013	1	YGL049C	TIF4632 SGDID:S000003017,Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4631p, Chr VII from 409607-406863, reverse complement, Verified ORF
YHR197W	31.685	1.00	9	397.0943	1	YHR197W	RIX1 SGDID:S000001240,Essential protein involved in the processing of the ITS2 region of the rRNA locus; required for the maturation and nuclear export of the 60S ribosomal subunit, Chr VIII from 493896-496187, Verified ORF
YHR009C	18.983	0.97	3	214.3053	1	YHR009C	YHR009C SGDID:S000001051,Putative protein of unknown function; not an essential gene, Chr VIII from 125675-124104, reverse complement, Uncharacterized ORF
YBL068W	14.074	1.00	3	297.9947	1	YBL068W	PRS4 SGDID:S000000164,5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes, Chr II from 92412-93395, Verified ORF
YKR010C	32.817	0.94	6	240.262	1	YKR010C	TOF2 SGDID:S000001718,Nonessential mitochondrial protein of unknown function with sequence similarity to Net1p; identified as a topoisomerase I (Top1p) binding protein; displays synthetic genetic interactions with TOP1 and HPR1, Chr XI from 460882-458567, reverse complement, Verified ORF
YDR135C	53.51	0.99	4	103.4582	1	YDR135C	YCF1 SGDID:S000002542,Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR, Chr IV from 727548-723001, reverse complement, Verified ORF
YOR118W	28.41	0.93	6	274.5793	1	YOR118W	YOR118W SGDID:S000005644,Hypothetical protein, Chr XV from 546858-548561, Uncharacterized ORF
YLR448W	11.56	1.00	171	20679.6502	1	YLR448W	RPL6B SGDID:S000004440,Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA, Chr XII from 1028850-1028864,1029249-1029764, Verified ORF
YNL001W	19.528	0.86	15	923.4999	1	YNL001W	DOM34 SGDID:S000004946,Probable RNA-binding protein, functions in protein translation to promote G1 progression and differentiation, required for meiotic cell division, Chr XIV from 627458-628618, Verified ORF
YKL015W	19.17	0.69	3	150.9569	1	YKL015W	PUT3 SGDID:S000001498,Transcriptional activator of proline utilization genes, constitutively binds PUT1 and PUT2 promoter sequences and undergoes a conformational change to form the active state; has a Zn(2)-Cys(6) binuclear cluster domain, Chr XI from 408187-411126, Verified ORF
YFR051C	11.39	1.00	6	736.4316	1	YFR051C	RET2 SGDID:S000001947,Delta subunit of the coatomer complex (COPI), which coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER, Chr VI from 251790-250150, reverse complement, Verified ORF
YGR094W	53.067	1.00	292	7692.4242	1	YGR094W	VAS1 SGDID:S000003326,Mitochondrial and cytoplasmic valyl-tRNA synthetase, Chr VII from 672190-675504, Verified ORF
YBR019C	25.027	0.75	5	209.4726	1	YBR019C	GAL10 SGDID:S000000223,UDP-glucose-4-epimerase, catalyzes the interconversion of UDP-galactose and UDP-D-glucose in galactose metabolism; also catalyzes the conversion of alpha-D-glucose or alpha-D-galactose to their beta-anomers, Chr II from 278352-276253, reverse complement, Verified ORF
YLL063C	18.46	0.87	2	131.7717	1	YLL063C	AYT1 SGDID:S000003986,Acetyltransferase; catalyzes trichothecene 3-O-acetylation, suggesting a possible role in trichothecene biosynthesis, Chr XII from 16072-14648, reverse complement, Verified ORF
YOR239W	23.27	1.00	16	961.2326	1	YOR239W	ABP140 SGDID:S000005765,Nonessential protein that binds actin filaments and localizes to actin patches and cables, has similarity to S-adenosylmethionine (AdoMet)-dependent methyltransferases, Chr XV from 784858-785688,785690-786745, Verified ORF
YNL103W-A	1.29	0.67	3	2178.2677	1	YNL103W-A	YNL103W-A SGDID:S000028701,Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching, Chr XIV from 426721-426810, Dubious ORF
YNL098C	15.599	0.97	3	260.7961	1	YNL098C	RAS2 SGDID:S000005042,GTP-binding protein that regulates the nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes, Chr XIV from 440572-439604, reverse complement, Verified ORF
YLR332W	7.5	0.96	1	178.943	1	YLR332W	MID2 SGDID:S000004324,O-glycosylated plasma membrane protein that acts as a sensor for cell wall integrity signaling and activates the pathway; interacts with Rom2p, a guanine nucleotide exchange factor for Rho1p, and with cell integrity pathway protein Zeo1p, Chr XII from 790676-791806, Verified ORF
YGR232W	9.61	0.98	2	285.1265	1	YGR232W	NAS6 SGDID:S000003464,Regulatory, non-ATPase subunit of the 26S proteasome; homolog of the human oncoprotein gankyrin, which interacts with the retinoblastoma tumor suppressor (Rb) and cyclin-dependent kinase 4\6, Chr VII from 953963-954649, Verified ORF
YMR006C	14.64	0.67	1	63.9791	1	YMR006C	PLB2 SGDID:S000004608,Phospholipase B (lysophospholipase) involved in phospholipid metabolism; displays transacylase activity in vitro; overproduction confers resistance to lysophosphatidylcholine, Chr XIII from 279681-277561, reverse complement, Verified ORF
YDL022W	9.16	1.00	35	5341.6752	1	YDL022W	GPD1 SGDID:S000002180,NAD-dependent glycerol-3-phosphate dehydrogenase, key enzyme of glycerol synthesis, essential for growth under osmotic stress; expression regulated by high-osmolarity glycerol response pathway; homolog of Gpd2p, Chr IV from 411822-412997, Verified ORF
YER024W	35.545	0.73	6	172.2663	1	YER024W	YAT2 SGDID:S000000826,Carnitine acetyltransferase; has similarity to Yat1p, which is a carnitine acetyltransferase associated with the mitochondrial outer membrane, Chr V from 202191-204962, Verified ORF
YAL066W	4.488	0.99	3	925.1422	1	YAL066W	YAL066W SGDID:S000000061,Hypothetical protein, Chr I from 10092-10400, Dubious ORF
YHR064C	24.14	1.00	345	19979.5978	1	YHR064C	SSZ1 SGDID:S000001106,Hsp70 protein that interacts with Zuo1p (a DnaJ homolog) to form a ribosome-associated complex that binds the ribosome via the Zuo1p subunit; also involved in pleiotropic drug resistance via sequential activation of PDR1 and PDR5; binds ATP, Chr VIII from 227143-225527, reverse complement, Verified ORF
YPL273W	12.069	1.00	13	1505.8335	1	YPL273W	SAM4 SGDID:S000006194,S-adenosylmethionine-homocysteine methyltransferase, functions along with Mht1p in the conversion of S-adenosylmethionine (AdoMet) to methionine to control the methionine\AdoMet ratio, Chr XVI from 25087-26064, Verified ORF
YBR189W	10.16	1.00	198	27244.3464	1	YBR189W	RPS9B SGDID:S000000393,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Bp and has similarity to E. coli S4 and rat S9 ribosomal proteins, Chr II from 604503-604509,604923-605503, Verified ORF
YJL183W	15.63	0.68	4	243.2847	1	YJL183W	MNN11 SGDID:S000003719,Subunit of a Golgi mannosyltransferase complex that also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, and mediates elongation of the polysaccharide mannan backbone; has homology to Mnn10p, Chr X from 84066-85334, Verified ORF
YHR003C	19.57	0.87	2	124.2977	1	YHR003C	YHR003C SGDID:S000001045,Protein of unknown function, localized to the mitochondrial outer membrane, Chr VIII from 111312-110023, reverse complement, Verified ORF
YOR151C	45.43	1.00	19	584.6766	1	YOR151C	RPB2 SGDID:S000005677,RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit, Chr XV from 616672-612998, reverse complement, Verified ORF
YOL058W	14.988	1.00	11	1026.0154	1	YOL058W	ARG1 SGDID:S000005419,Arginosuccinate synthetase, catalyzes the formation of L-argininosuccinate from citrulline and L-aspartate in the arginine biosynthesis pathway; potential Cdc28p substrate, Chr XV from 219210-220472, Verified ORF
YML126C	17.1	1.00	78	6376.8089	1	YML126C	ERG13 SGDID:S000004595,3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase, catalyzes the formation of HMG-CoA from acetyl-CoA and acetoacetyl-CoA; involved in the second step in mevalonate biosynthesis, Chr XIII from 20536-19061, reverse complement, Verified ORF
YHL007C	36.87	1.00	9	341.2512	1	YHL007C	STE20 SGDID:S000000999,Signal transducing kinase of the PAK (p21-activated kinase) family, involved in pheromone response and pseudohyphal\invasive growth pathways, activated by Cdc42p; binds Ste4p at a GBB motif present in noncatalytic domains of PAK kinases, Chr VIII from 97933-95114, reverse complement, Verified ORF
YPR041W	21.498	1.00	32	2080.9269	1	YPR041W	TIF5 SGDID:S000006245,Translation initiation factor eIF-5; N-terminal domain functions as a GTPase-activating protein to mediate hydrolysis of ribosome-bound GTP; C-terminal domain is the core of ribosomal preinitiation complex formation, Chr XVI from 648701-649918, Verified ORF
YLR258W	27.717	0.98	4	197.7173	1	YLR258W	GSY2 SGDID:S000004248,Glycogen synthase, similar to Gsy1p; expression induced by glucose limitation, nitrogen starvation, heat shock, and stationary phase; activity regulated by cAMP-dependent, Snf1p and Pho85p kinases as well as by the Gac1p-Glc7p phosphatase, Chr XII from 660718-662835, Verified ORF
YHR171W	31.818	0.94	7	289.1065	1	YHR171W	ATG7 SGDID:S000001214,Autophagy-related protein and dual specificity member of the E1 family of ubiquitin-activating enzymes; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine, required steps in autophagosome formation., Chr VIII from 445713-447605, Verified ORF
YJL050W	52.58	1.00	23	611.5221	1	YJL050W	MTR4 SGDID:S000003586,Dead-box family ATP dependent helicase required for mRNA export from the nucleus; co-factor of the exosome complex, required for 3' end formation of 5.8S rRNA, Chr X from 342439-345660, Verified ORF
YBL085W	47.448	1.00	8	235.7094	1	YBL085W	BOI1 SGDID:S000000181,Protein implicated in polar growth, functionally redundant with Boi2p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain, Chr II from 63873-66815, Verified ORF
YHR208W	16.42	1.00	174	14814.2956	1	YHR208W	BAT1 SGDID:S000001251,Mitochondrial branched-chain amino acid aminotransferase, homolog of murine ECA39; highly expressed during logarithmic phase and repressed during stationary phase, Chr VIII from 517532-518713, Verified ORF
YOL123W	14.239	1.00	13	1276.347	1	YOL123W	HRP1 SGDID:S000005483,Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA\B family member that binds to poly (A) signal sequences, Chr XV from 87844-89448, Verified ORF
YOR136W	11.04	1.00	44	5571.7101	1	YOR136W	IDH2 SGDID:S000005662,Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle, Chr XV from 580251-581360, Verified ORF
YAR042W	48.814	0.94	7	188.4457	1	YAR042W	SWH1 SGDID:S000000081,Protein similar to mammalian oxysterol-binding protein; contains ankyrin repeats; localizes to the Golgi and the nucleus-vacuole junction, Chr I from 192613-196179, Verified ORF
YOR327C	4.58	1.00	4	1220.9543	1	YOR327C	SNC2 SGDID:S000005854,Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; member of the synaptobrevin\VAMP family of R-type v-SNARE proteins, Chr XV from 931078-930731, reverse complement, Verified ORF
YGL094C	38.76	0.97	6	209.9153	1	YGL094C	PAN2 SGDID:S000003062,Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes, Chr VII from 334468-331121, reverse complement, Verified ORF
YLR130C	8.28	0.71	2	239.7523	1	YLR130C	ZRT2 SGDID:S000004120,Low-affinity zinc transporter of the plasma membrane; transcription is induced under low-zinc conditions by the Zap1p transcription factor, Chr XII from 404063-402795, reverse complement, Verified ORF
YDR234W	28.06	1.00	19	946.6094	1	YDR234W	LYS4 SGDID:S000002642,Homoaconitase, catalyzes the conversion of homocitrate to homoisocitrate, which is a step in the lysine biosynthesis pathway, Chr IV from 931125-933206, Verified ORF
YDR081C	28.265	0.83	4	164.2078	1	YDR081C	PDC2 SGDID:S000002488,Transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes, Chr IV from 610078-607301, reverse complement, Verified ORF
YLR384C	45.906	1.00	5	152.2668	1	YLR384C	IKI3 SGDID:S000004376,Subunit of RNA polymerase II elongator histone acetyltransferase complex, involved in maintaining its structural integrity; negatively regulates exocytosis independent of transcription, homolog of human familial dysautonomia (FD) protein, Chr XII from 892900-888851, reverse complement, Verified ORF
YCR012W	37.417	1.00	1163	43452.5895	1	YCR012W	PGK1 SGDID:S000000605,3-phosphoglycerate kinase, catalyzes transfer of high-energy phosphoryl groups from the acyl phosphate of 1,3-bisphosphoglycerate to ADP to produce ATP; key enzyme in glycolysis and gluconeogenesis, Chr III from 137744-138994, Verified ORF
YKR064W	35.49	1.00	11	433.3029	1	YKR064W	YKR064W SGDID:S000001772,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; detectable in highly purified mitochondria, Chr XI from 562189-564780, Uncharacterized ORF
YNL220W	23.89	1.00	56	3277.0026	1	YNL220W	ADE12 SGDID:S000005164,Adenylosuccinate synthase, catalyzes the first committed step in the 'de novo' biosynthesis of adenosine, Chr XIV from 234414-235715, Verified ORF
YJL186W	25.01	1.00	6	335.3841	1	YJL186W	MNN5 SGDID:S000003722,Alpha-1,2-mannosyltransferase, responsible for addition of the second alpha-1,2-linked mannose of the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment, Chr X from 80153-81913, Verified ORF
YDR005C	10.08	1.00	4	554.759	1	YDR005C	MAF1 SGDID:S000002412,Negative regulator of RNA polymerase III; component of several signaling pathways that repress polymerase III transcription in response to changes in cellular environment; targets the initiation factor TFIIIB, Chr IV from 458100-458095,458014-456833, reverse complement, Verified ORF
YJL198W	20.55	0.94	6	383.6826	1	YJL198W	PHO90 SGDID:S000003734,Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth, Chr X from 60843-63488, Verified ORF
YHL021C	14.65	0.99	5	472.3593	1	YHL021C	YHL021C SGDID:S000001013,The authentic, non-tagged protein was localized to the mitochondria, Chr VIII from 65856-64459, reverse complement, Uncharacterized ORF
YPR070W	21.467	0.94	2	122.431	1	YPR070W	MED1 SGDID:S000006274,Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation, Chr XVI from 685895-687595, Verified ORF
YKR016W	29.65	1.00	3	141.4495	1	YKR016W	YKR016W SGDID:S000001724,The authentic, non-tagged protein was localized to the mitochondria, Chr XI from 469360-470982, Uncharacterized ORF
YPR133C	26.54	1.00	15	790.1239	1	YPR133C	SPN1 SGDID:S000006337,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, probable transcriptional elongation factor; metazoan homologs contain an acidic N terminus; mutations in the gene confer an Spt- phenotype, Chr XVI from 797206-795974, reverse complement, Verified ORF
YPL232W	7.61	0.96	2	352.713	1	YPL232W	SSO1 SGDID:S000006153,Plasma membrane t-SNARE involved in fusion of secretory vesicles at the plasma membrane; forms a complex, with t-SNARE Sec9p, that binds v-SNARE Snc2p; also required for sporulation; syntaxin homolog that is functionally redundant with Sso2p, Chr XVI from 107275-108147, Verified ORF
YER001W	31.473	1.00	8	355.3503	1	YER001W	MNN1 SGDID:S000000803,Alpha-1,3-mannosyltransferase, integral membrane glycoprotein of the Golgi complex, required for addition of alpha1,3-mannose linkages to N-linked and O-linked oligosaccharides, one of five S. cerevisiae proteins of the MNN1 family, Chr V from 153519-155807, Verified ORF
YDR221W	22.9	0.73	1	44.5648	1	YDR221W	GTB1 SGDID:S000002629,Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p, involved in removal of two glucose residues from N-linked glycans during glycoprotein biogenesis in the ER, Chr IV from 907326-909434, Verified ORF
YGR116W	70.1030000000001	1.00	14	279.1877	1	YGR116W	SPT6 SGDID:S000003348,Essential protein that interacts with histones and is involved in nucleosome disassembly and reassembly during transcription elongation, Chr VII from 720413-724768, Verified ORF
YGR264C	35.477	1.00	81	3191.8541	1	YGR264C	MES1 SGDID:S000003496,Methionyl-tRNA synthetase, forms a complex with glutamyl-tRNA synthetase (Gus1p) and Arc1p, which increases the catalytic efficiency of both tRNA synthetases; also has a role in nuclear export of tRNAs, Chr VII from 1021859-1019604, reverse complement, Verified ORF
YHR074W	23.936	1.00	6	350.4326	1	YHR074W	QNS1 SGDID:S000001116,Glutamine-dependent NAD(+) synthetase, essential for the formation of NAD(+) from nicotinic acid adenine dinucleotide, Chr VIII from 246195-248339, Verified ORF
YPL215W	17.42	0.67	1	53.7689	1	YPL215W	CBP3 SGDID:S000006136,Mitochondrial protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome bc1 complex); interacts with Cbp4p and function is partially redundant with that of Cbp4p, Chr XVI from 147415-148422, Verified ORF
YJR084W	17.49	0.95	3	227.8032	1	YJR084W	CSN12 SGDID:S000003844,Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling, Chr X from 583648-584919, Verified ORF
YGL234W	30.198	1.00	171	7916.3109	1	YGL234W	ADE5,Bifunctional enzyme of the 'de novo' purine nucleotide biosynthetic pathway, contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities,7 SGDID:S000003203, Chr VII from 56482-58890, Verified ORF
YKL198C	26.28	0.88	6	280.8752	1	YKL198C	PTK1 SGDID:S000001681,Putative serine\threonine protein kinase that regulates spermine uptake; involved in polyamine transport; possible mitochondrial protein, Chr XI from 70223-68274, reverse complement, Verified ORF
YCL059C	17.82	1.00	5	392.2538	1	YCL059C	KRR1 SGDID:S000000564,Essential nucleolar protein required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit, Chr III from 23379-22429, reverse complement, Verified ORF
YER164W	74.878	1.00	19	354.7351	1	YER164W	CHD1 SGDID:S000000966,Nucleosome remodeling factor that functions in regulation of transcription elongation; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SILK complexes, Chr V from 505387-509793, Verified ORF
YJR152W	13.41	0.65	2	135.525	1	YJR152W	DAL5 SGDID:S000003913,Allantoin permease; ureidosuccinate permease; expression is constitutive but sensitive to nitrogen catabolite repression, Chr X from 719582-721213, Verified ORF
YER003C	18.667	1.00	101	7564.0041	1	YER003C	PMI40 SGDID:S000000805,Mannose-6-phosphate isomerase, catalyzes the interconversion of fructose-6-P and mannose-6-P; required for early steps in protein mannosylation, Chr V from 159117-159087,158993-157735, reverse complement, Verified ORF
YPR108W	16.98	1.00	6	493.9903	1	YPR108W	RPN7 SGDID:S000006312,Essential, non-ATPase regulatory subunit of the 26S proteasome, similar to another S. cerevisiae regulatory subunit, Rpn5p, as well as to mammalian proteasome subunits, Chr XVI from 742452-743741, Verified ORF
YBR085W	13.97	0.89	2	178.1264	1	YBR085W	AAC3 SGDID:S000000289,Mitochondrial inner membrane ADP\ATP translocator, exchanges cytosolic ADP for mitochondrially synthesized ATP; expressed under anaerobic conditions; similar to Pet9p and Aac1p; has roles in maintenance of viability and in respiration, Chr II from 415977-416900, Verified ORF
YDR385W	43.354	1.00	1039	33503.5854	2	YDR385W,YOR133W	EFT2 SGDID:S000002793,Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin, Chr IV from 1243222-1245750, Verified ORF
YML046W	30.87	0.81	3	110.046	1	YML046W	PRP39 SGDID:S000004509,U1 snRNP protein involved in splicing, contains multiple tetriatricopeptide repeats, Chr XIII from 181474-183363, Verified ORF
YBR109C	9.518	1.00	42	6168.9109	1	YBR109C	CMD1 SGDID:S000000313,Calmodulin; Ca++ binding protein that regulates Ca++ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca++ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin, Chr II from 458356-457913, reverse complement, Verified ORF
YLL016W	40.788	1.00	10	342.746	1	YLL016W	SDC25 SGDID:S000003939,Non-essential Ras guanine nucleotide exchange factor (GEF) localized to the membrane; expressed in poor nutrients and on non-fermentable carbon sources; homologous to CDC25; contains a stop codon in S288C; full-length gene includes YLL017W, Chr XII from 112846-115992, pseudogene
YKL080W	18.35	1.00	79	6018.6062	1	YKL080W	VMA5 SGDID:S000001563,Subunit C of the eight-subunit V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane, Chr XI from 284674-285852, Verified ORF
YDL153C	33.599	1.00	4	166.4326	1	YDL153C	SAS10 SGDID:S000002312,Component of the small (ribosomal) subunit (SSU) processosome required for pre-18S rRNa processing; essential nucleolar protein that, when overproduced, disrupts silencing, Chr IV from 183019-181187, reverse complement, Verified ORF
YIL137C	38.516	1.00	4	145.1856	1	YIL137C	YIL137C SGDID:S000001399,Putative metalloprotease, Chr IX from 92788-89948, reverse complement, Uncharacterized ORF
YLL012W	23.357	0.78	8	373.4843	1	YLL012W	YEH1 SGDID:S000003935,Steryl ester hydrolase, one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes, Chr XII from 125533-127254, Verified ORF
YLL001W	37.47	1.00	6	223.8579	1	YLL001W	DNM1 SGDID:S000003924,Dynamin-related GTPase required for mitochondrial fission and the maintenance of mitochondrial morphology, assembles on the cytoplasmic face of mitochondrial tubules at sites at which division will occur; also participates in endocytosis, Chr XII from 147889-150162, Verified ORF
YDL150W	18.95	1.00	13	959.0451	1	YDL150W	RPC53 SGDID:S000002309,RNA polymerase III subunit C53, Chr IV from 183344-184612, Verified ORF
YBL075C	26.178	0.81	1	43.2567	1	YBL075C	SSA3 SGDID:S000000171,ATPase involved in protein folding and the response to stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm, Chr II from 86446-84497, reverse complement, Verified ORF
YHR108W	20.19	1.00	6	415.451	1	YHR108W	GGA2 SGDID:S000001150,Golgi-localized protein with homology to gamma-adaptin, interacts with and regulates Arf1p and Arf2p in a GTP-dependent manner in order to facilitate traffic through the late Golgi, Chr VIII from 328306-330063, Verified ORF
YML093W	40.52	1.00	12	414.0156	1	YML093W	UTP14 SGDID:S000004558,Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA, Chr XIII from 83090-85789, Verified ORF
YHR082C	33.05	0.66	2	55.8351	1	YHR082C	KSP1 SGDID:S000001124,Nonessential putative serine\threonine protein kinase of unknown cellular role; overproduction causes allele-specific suppression of the prp20-10 mutation, Chr VIII from 271550-268461, reverse complement, Verified ORF
YER036C	26.817	1.00	98	5108.8222	1	YER036C	ARB1 SGDID:S000000838,ATPase of the ATP-binding cassette (ABC) family involved in 40S and 60S ribosome biogenesis, has similarity to Gcn20p; shuttles from nucleus to cytoplasm, physically interacts with Tif6p, Lsg1p, Chr V from 225198-223366, reverse complement, Uncharacterized ORF
YFL039C	18.22	1.00	380	29156.8187	1	YFL039C	ACT1 SGDID:S000001855,Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions, Chr VI from 54695-54686,54377-53260, reverse complement, Verified ORF
YNL239W	25.32	0.99	4	218.6434	1	YNL239W	LAP3 SGDID:S000005183,Aminopeptidase of cysteine protease family, has a DNA binding activity and acts as bleomycin hydrolase in vitro; transcription is regulated by galactose via Gal4p, Chr XIV from 200570-201934, Verified ORF
YDR398W	17.297	0.73	2	118.0013	1	YDR398W	UTP5 SGDID:S000002806,Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA, Chr IV from 1267463-1269394, Verified ORF
YNL168C	7.598	1.00	11	2023.9431	1	YNL168C	YNL168C SGDID:S000005112,The authentic, non-tagged protein was localized to mitochondria, Chr XIV from 318811-318032, reverse complement, Uncharacterized ORF
YDR439W	16.23	0.67	3	173.134	1	YDR439W	LRS4 SGDID:S000002847,Protein involved in rDNA silencing; positively charged coiled-coil protein with limited similarity to myosin, Chr IV from 1339668-1340711, Verified ORF
YDR381W	8.86	1.00	29	4575.8227	1	YDR381W	YRA1 SGDID:S000002789,Nuclear protein that binds to RNA and to Mex67p, required for export of poly(A)+ mRNA from the nucleus; member of the REF (RNA and export factor binding proteins) family; another family member, Yra2p, can substitute for Yra1p function, Chr IV from 1236550-1236834,1237601-1237996, Verified ORF
YER127W	12.41	1.00	4	450.602	1	YER127W	LCP5 SGDID:S000000929,Essential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processing and reduced polysome levels; localizes primarily to the nucleolus, Chr V from 414477-415550, Verified ORF
YPL091W	19.88	1.00	35	2461.2548	1	YPL091W	GLR1 SGDID:S000006012,Cytosolic and mitochondrial glutathione oxidoreductase, converts oxidized glutathione to reduced glutathione, Chr XVI from 375499-376950, Verified ORF
YKR031C	73.4700000000001	0.80	6	91.3347	1	YKR031C	SPO14 SGDID:S000001739,Phospholipase D, catalyzes the hydrolysis of phosphatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis, Chr XI from 506037-500986, reverse complement, Verified ORF
YJR090C	44.61	1.00	5	156.6905	1	YJR090C	GRR1 SGDID:S000003850,F-box protein component of the SCF ubiquitin-ligase complex, required for Cln1p and Cln2p degradation; involved in carbon catabolite repression, glucose-dependent divalent cation transport, high-affinity glucose transport, and morphogenesis, Chr X from 594242-590787, reverse complement, Verified ORF
YCL011C	17.49	1.00	12	959.1716	1	YCL011C	GBP2 SGDID:S000000517,Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Hrb1p and Npl3p; also binds single-stranded telomeric repeat sequence in vitro, Chr III from 103358-102075, reverse complement, Verified ORF
YPL059W	9.567	1.00	12	1753.5186	1	YPL059W	GRX5 SGDID:S000005980,Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; mitochondrial matrix protein involved in the synthesis\assembly of iron-sulfur centers; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p, Chr XVI from 444576-445028, Verified ORF
YHR132C	12.58	0.99	7	770.1184	1	YHR132C	ECM14 SGDID:S000001174,Putative metalloprotease with similarity to the zinc carboxypeptidase family, required for normal cell wall assembly, Chr VIII from 369797-368505, reverse complement, Verified ORF
YIL022W	26.169	1.00	6	320.5302	1	YIL022W	TIM44 SGDID:S000001284,Peripheral mitochondrial membrane protein involved in mitochondrial protein import, tethers essential chaperone Ssc1p to the translocon channel at the matrix side of the inner membrane, Chr IX from 311163-312458, Verified ORF
YPR067W	9.63	0.90	13	1698.4958	1	YPR067W	ISA2 SGDID:S000006271,Protein required for maturation of mitochondrial and cytosolic Fe\S proteins, localizes to the mitochondrial intermembrane space, overexpression of ISA2 suppresses grx5 mutations, Chr XVI from 682217-682774, Verified ORF
YGR254W	21.889	1.00	845	53967.9225	1	YGR254W	ENO1 SGDID:S000003486,Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is repressed in response to glucose, Chr VII from 1000932-1002245, Verified ORF
YLR336C	43.19	1.00	7	226.579	1	YLR336C	SGD1 SGDID:S000004328,Essential nuclear protein with a possible role in the osmoregulatory glycerol response; interacts with phospholipase C (Plc1p); putative homolog of human NOM1 which is implicated in acute myeloid leukemia, Chr XII from 802396-799697, reverse complement, Verified ORF
YDR441C	5.23	0.86	1	229.8802	1	YDR441C	APT2 SGDID:S000002849,Apparent pseudogene, not transcribed or translated under normal conditions; encodes a protein with similarity to adenine phosphoribosyltransferase, but artificially expressed protein exhibits no enzymatic activity, Chr IV from 1345054-1344509, reverse complement, Verified ORF
YDR101C	20.865	1.00	7	469.0126	1	YDR101C	ARX1 SGDID:S000002508,Protein associated with the ribosomal export complex, Chr IV from 657464-655683, reverse complement, Verified ORF
YDL174C	25.354	1.00	5	275.6947	1	YDL174C	DLD1 SGDID:S000002333,D-lactate dehydrogenase, oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane, Chr IV from 147590-145827, reverse complement, Verified ORF
YMR121C	6.05	0.86	1	198.7229	1	YMR121C	RPL15B SGDID:S000004728,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Ap and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA, Chr XIII from 510347-509733, reverse complement, Verified ORF
YDR224C	5.17	1.00	83	22443.5969	2	YDR224C,YBL002W	HTB1 SGDID:S000002632,One of two nearly identical (see HTB2) histone H2B subtypes required for chromatin assembly and chromosome function; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates transcriptional activation, meiotic DSB formation and H3 methylation , Chr IV from 914708-914313, reverse complement, Verified ORF
YBR261C	8.1	0.99	15	2562.9866	1	YBR261C	YBR261C SGDID:S000000465,Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YBR261C is not an essential gene, Chr II from 735525-734827, reverse complement, Uncharacterized ORF
YPR102C	7.26	1.00	121	23299.8788	2	YPR102C,YGR085C	RPL11A SGDID:S000006306,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11, Chr XVI from 731746-731222, reverse complement, Verified ORF
YNL141W	14.74	1.00	25	2371.0867	1	YNL141W	AAH1 SGDID:S000005085,Adenine deaminase (adenine aminohydrolase), involved in purine salvage and nitrogen catabolism, Chr XIV from 359598-360641, Verified ORF
YLR168C	12.3	0.87	9	889.9417	1	YLR168C	YLR168C SGDID:S000004158,Putative protein of unknown function that may be involved in intramitochondrial sorting; has homology to a domain of human PREL1; the green fluorescent protein (GFP)-tagged protein localizes to mitochondria, Chr XII from 500272-499580, reverse complement, Uncharacterized ORF
YPL123C	20.687	0.76	2	102.719	1	YPL123C	RNY1 SGDID:S000006044,RNAse; member of the T(2) family of endoribonucleases, Chr XVI from 318944-317640, reverse complement, Verified ORF
YDR498C	14.659	0.74	9	635.1477	1	YDR498C	SEC20 SGDID:S000002906,Membrane glycoprotein v-SNARE involved in retrograde transport from the Golgi to the ER; required for N- and O-glycosylation in the Golgi but not in the ER; forms a complex with the cytosolic Tip20p, Chr IV from 1446986-1445835, reverse complement, Verified ORF
YJR096W	16.396	0.91	10	775.9047	1	YJR096W	YJR096W SGDID:S000003857,Putative xylose and arabinose reductase, Chr X from 611113-611961, Uncharacterized ORF
YEL034W	8.599	1.00	114	18533.6866	1	YEL034W	HYP2 SGDID:S000000760,Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Anb1p; undergoes an essential hypusination modification; expressed under aerobic conditions, Chr V from 85676-86149, Verified ORF
YOR335C	44.41	1.00	247	7775.3705	1	YOR335C	ALA1 SGDID:S000005862,Cytoplasmic alanyl-tRNA synthetase, required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog, Chr XV from 949106-946230, reverse complement, Verified ORF
YHR135C	16.288	1.00	17	1459.1034	1	YHR135C	YCK1 SGDID:S000001177,Palmitoylated, plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck2p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck2p, Chr VIII from 374313-372697, reverse complement, Verified ORF
YML112W	11.42	0.95	1	116.2953	1	YML112W	CTK3 SGDID:S000004580,Gamma subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates the C-terminal repeated domain of the RNA polymerase II large subunit (Rpo21p) to affect both transcription and pre-mRNA 3' end processing, Chr XIII from 45063-45953, Verified ORF
YGR159C	20.229	1.00	122	8431.2181	1	YGR159C	NSR1 SGDID:S000003391,Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis, Chr VII from 807661-806417, reverse complement, Verified ORF
YDR270W	31.589	0.72	4	127.4563	1	YDR270W	CCC2 SGDID:S000002678,Cu(+2)-transporting P-type ATPase, required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases, Chr IV from 1005671-1008685, Verified ORF
YDR285W	44.03	1.00	14	444.5127	1	YDR285W	ZIP1 SGDID:S000002693,Transverse filament protein of the synaptonemal complex; required for normal levels of meiotic recombination and pairing between homologous chromosome during meiosis; potential Cdc28p substrate, Chr IV from 1032432-1035059, Verified ORF
YGR285C	19.079	1.00	136	9965.2503	1	YGR285C	ZUO1 SGDID:S000003517,Cytosolic ribosome-associated chaperone that acts, together with Ssz1p and the Ssb proteins, as a chaperone for nascent polypeptide chains; contains a DnaJ domain and functions as a J-protein partner for Ssb1p and Ssb2p, Chr VII from 1063159-1061858, reverse complement, Verified ORF
YOR098C	37.626	1.00	9	334.3946	1	YOR098C	NUP1 SGDID:S000005624,Nuclear pore complex (NPC) subunit, involved in protein import\export and in export of RNAs, possible karyopherin release factor that accelerates release of karyopherin-cargo complexes after transport across NPC; potential Cdc28p substrate, Chr XV from 511179-507949, reverse complement, Verified ORF
YIL026C	38.03	0.68	3	74.9909	1	YIL026C	IRR1 SGDID:S000001288,Subunit of the cohesin complex, which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms, essential for viability, Chr IX from 307927-304475, reverse complement, Verified ORF
YML017W	25.23	0.81	12	538.5845	1	YML017W	PSP2 SGDID:S000004479,Asn rich cytoplasmic protein that contains RGG motifs; high-copy suppressor of group II intron-splicing defects of a mutation in MRS2 and of a conditional mutation in POL1 (DNA polymerase alpha); possible role in mitochondrial mRNA splicing, Chr XIII from 236588-236591,236954-238731, Verified ORF
YJR073C	5.76	0.67	1	162.6137	1	YJR073C	OPI3 SGDID:S000003834,Phospholipid methyltransferase (methylene-fatty-acyl-phospholipid synthase), catalyzes the last two steps in phosphatidylcholine biosynthesis, Chr X from 572850-572230, reverse complement, Verified ORF
YEL013W	17.409	1.00	7	562.1201	1	YEL013W	VAC8 SGDID:S000000739,Phosphorylated vacuolar membrane protein that interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions, Chr V from 128825-130561, Verified ORF
YMR128W	58.165	0.98	4	94.2169	1	YMR128W	ECM16 SGDID:S000004735,Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP, predominantly nucleolar in distribution, required for 18S rRNA synthesis, Chr XIII from 523695-527498, Verified ORF
YNL087W	52.48	1.00	16	426.2172	1	YNL087W	TCB2 SGDID:S000005031,Bud-specific protein with a potential role in membrane trafficking; GFP-fusion protein migrates from the cell surface to intracellular vesicles near vacuole; contains 3 calcium and lipid binding domains; mRNA is targeted to the bud via the mRNA transport system involving She2p, Chr XIV from 462413-465949, Verified ORF
YGR134W	48.98	1.00	6	171.2526	1	YGR134W	CAF130 SGDID:S000003366,Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation, Chr VII from 757775-761143, Verified ORF
YJL177W	8.07	0.99	2	343.0019	1	YJL177W	RPL17B SGDID:S000003713,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similarity to E. coli L22 and rat L17 ribosomal proteins, Chr X from 90784-91092,91410-91655, Verified ORF
YDR502C	15.34	1.00	157	14308.009	1	YDR502C	SAM2 SGDID:S000002910,S-adenosylmethionine synthetase, catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; one of two differentially regulated isozymes (Sam1p and Sam2p), Chr IV from 1454456-1453302, reverse complement, Verified ORF
YGL037C	7.529	1.00	13	2413.8538	1	YGL037C	PNC1 SGDID:S000003005,Nicotinamidase that converts nicotinamide to nicotinic acid as part of the NAD(+) salvage pathway, required for life span extension by calorie restriction; PNC1 expression responds to all known stimuli that extend replicative life span, Chr VII from 427953-427303, reverse complement, Verified ORF
YGL040C	12.098	1.00	12	1386.6682	1	YGL040C	HEM2 SGDID:S000003008,Delta-aminolevulinate dehydratase, a homo-octameric enzyme, catalyzes the conversion of delta-aminolevulinic acid to porphobilinogen, the second step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus, Chr VII from 420561-419533, reverse complement, Verified ORF
YOR259C	20.03	1.00	29	2024.0533	1	YOR259C	RPT4 SGDID:S000005785,One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; required for spindle pole body duplication; localized mainly to the nucleus throughout the cell cycle, Chr XV from 813708-812395, reverse complement, Verified ORF
YBL041W	10.73	1.00	16	2084.6117	1	YBL041W	PRE7 SGDID:S000000137,20S proteasome beta-type subunit, Chr II from 141250-141975, Verified ORF
YLR227W-B	58.14	0.99	7	166.6338	2	YLR227W-B,YPR158C-D	YLR227W-B SGDID:S000007376,TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition, Chr XII from 593440-594744,594746-598708, transposable_element_gene
YEL055C	49.886	1.00	48	1345.1399	1	YEL055C	POL5 SGDID:S000000781,Protein with sequence similarity to the human MybBP1A and weak sequence similar to B-type DNA polymerases, not required for chromosomal DNA replication; required for the synthesis of rRNA, Chr V from 51539-48471, reverse complement, Verified ORF
YNL009W	28.635	0.88	5	214.8129	1	YNL009W	IDP3 SGDID:S000004954,Peroxisomal NADP-dependent isocitrate dehydrogenase, catalyzes oxidation of isocitrate to alpha-ketoglutarate with the formation of NADP(H+), required for growth on unsaturated fatty acids, Chr XIV from 614822-616084, Verified ORF
YGL030W	6.1	1.00	108	24751.3466	1	YGL030W	RPL30 SGDID:S000002998,Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein; involved in pre-rRNA processing in the nucleolus; autoregulates splicing of its transcript, Chr VII from 439096-439098,439329-439643, Verified ORF
YJR076C	13.48	1.00	11	1140.7952	1	YJR076C	CDC11 SGDID:S000003837,Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM, Chr X from 576516-575269, reverse complement, Verified ORF
YKL005C	26.868	0.70	3	109.2669	1	YKL005C	BYE1 SGDID:S000001488,Negative regulator of transcription elongation, contains a TFIIS-like domain and a PHD finger, multicopy suppressor of temperature-sensitive ess1 mutations, probably binds RNA polymerase II large subunit, Chr XI from 434520-432736, reverse complement, Verified ORF
YPR183W	11.168	1.00	82	10264.6314	1	YPR183W	DPM1 SGDID:S000006387,Dolichol phosphate mannose (Dol-P-Man) synthase of the ER membrane, catalyzes the formation of Dol-P-Man from Dol-P and GDP-Man; required for glycosyl phosphatidylinositol membrane anchoring, O mannosylation, and protein glycosylation, Chr XVI from 900751-901554, Verified ORF
YOR021C	16.31	1.00	11	942.8522	1	YOR021C	YOR021C SGDID:S000005547,Hypothetical protein, Chr XV from 373439-372798, reverse complement, Uncharacterized ORF
YOR112W	34.51	0.81	1	32.8129	1	YOR112W	YOR112W SGDID:S000005638,Hypothetical protein, Chr XV from 531509-533794, Uncharacterized ORF
YIL079C	13.05	0.68	2	145.6911	1	YIL079C	AIR1 SGDID:S000001341,RING finger protein that interacts with the arginine methyltransferase Hmt1p to regulate methylation of Npl3p, which modulates Npl3p function in mRNA processing and export; has similarity to Air2p, Chr IX from 212002-210920, reverse complement, Verified ORF
YDR177W	7.47	0.97	10	1815.3319	1	YDR177W	UBC1 SGDID:S000002584,Ubiquitin-conjugating enzyme that mediates selective degradation of short-lived and abnormal proteins; plays a role in vesicle biogenesis and ER-associated protein degradation (ERAD); component of the cellular stress response, Chr IV from 816875-817522, Verified ORF
YOL018C	18.77	0.96	4	286.0038	1	YOL018C	TLG2 SGDID:S000005378,Syntaxin-like t-SNARE that forms a complex with Tlg1p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds Vps45p, which prevents Tlg2p degradation and also facilitates t-SNARE complex formation, Chr XV from 292075-290882, reverse complement, Verified ORF
YGL124C	26.248	0.74	2	78.8261	1	YGL124C	MON1 SGDID:S000003092,Protein required for fusion of cvt-vesicles and autophagosomes with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate, Chr VII from 276720-274786, reverse complement, Verified ORF
YBR258C	9.27	0.80	5	603.2331	1	YBR258C	SHG1 SGDID:S000000462,Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres, Chr II from 730157-729729, reverse complement, Verified ORF
YAR002W	32.21	0.89	15	579.4226	1	YAR002W	NUP60 SGDID:S000000063,Subunit of the nuclear pore complex (NPC), functions to anchor Nup2p to the NPC in a process controlled by the nucleoplasmic concentration of Gsp1p-GTP; potential Cdc28p substrate; involved in telomere maintenance, Chr I from 152259-153878, Verified ORF
YPR074C	30.38	1.00	333	15323.6201	1	YPR074C	TKL1 SGDID:S000006278,Transketolase, similar to Tkl2p; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids, Chr XVI from 694835-692793, reverse complement, Verified ORF
YKL092C	50.752	0.94	4	103.5713	1	YKL092C	BUD2 SGDID:S000001575,GTPase activating factor for Rsr1p\Bud1p required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types, Chr XI from 269103-265789, reverse complement, Verified ORF
YIL063C	20.999	1.00	18	1198.3365	1	YIL063C	YRB2 SGDID:S000001325,Protein of unknown function involved in nuclear processes of the Ran-GTPase cycle; involved in nuclear protein export; contains Ran Binding Domain and FxFG repeats; interacts with Srm1p, GTP-Gsp1p, Rna1p and Crm1p; is not essential, Chr IX from 243741-242758, reverse complement, Verified ORF
YLR262C-A	3.92	1.00	6	2139.7847	1	YLR262C-A	YLR262C-A SGDID:S000007246,Similar to C. elegans protein, Chr XII from 669664-669470, reverse complement, Uncharacterized ORF
YGL253W	28.08	1.00	567	28228.6993	1	YGL253W	HXK2 SGDID:S000003222,Hexokinase isoenzyme 2 that catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene, Chr VII from 23935-25395, Verified ORF
YPL124W	13.72	0.72	5	366.8202	1	YPL124W	SPC29 SGDID:S000006045,Inner plaque spindle pole body (SPB) component, links the central plaque component Spc42p to the inner plaque component Spc110p; required for SPB duplication, Chr XVI from 316754-317515, Verified ORF
YJR139C	15.82	1.00	182	16083.1021	1	YJR139C	HOM6 SGDID:S000003900,Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase), dimeric enzyme that catalyzes the third step in the common pathway for methionine and threonine biosynthesis; enzyme has nucleotide-binding, dimerization and catalytic regions, Chr X from 690440-689361, reverse complement, Verified ORF
YDR233C	13.94	1.00	11	1103.1506	1	YDR233C	RTN1 SGDID:S000002641,Protein of unknown function; has similarity to mammalian reticulon proteins; member of the RTNLA (reticulon-like A) subfamily, Chr IV from 930353-929466, reverse complement, Verified ORF
YOL076W	35.718	0.81	19	602.3603	1	YOL076W	MDM20 SGDID:S000005436,Non-catalytic subunit of the NatB N-terminal acetyltransferase, which catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met; involved in mitochondrial inheritance and actin assembly, Chr XV from 187024-189414, Verified ORF
YEL040W	6.52	0.88	23	4339.7811	1	YEL040W	UTR2 SGDID:S000000766,Putative glycosidase, glycosylphosphatidylinositol (GPI)-anchored protein localized to the bud neck; has a role in cell wall maintenance, Chr V from 78053-79456, Verified ORF
YGR217W	60.78	0.91	4	83.7231	1	YGR217W	CCH1 SGDID:S000003449,Voltage-gated calcium channel involved in calcium influx in response to mating pheromones, Chr VII from 924699-930818, Verified ORF
YNL250W	72.27	0.95	7	128.6377	1	YNL250W	RAD50 SGDID:S000005194,Subunit of MRX complex, with Mre11p and Xrs2p, involved in processing double-strand DNA breaks in vegetative cells, initiation of meiotic DSBs, telomere maintenance, and nonhomologous end joining, Chr XIV from 175411-179349, Verified ORF
YDL092W	5.7	0.99	3	728.4277	1	YDL092W	SRP14 SGDID:S000002250,Signal recognition particle (SRP) subunit, interacts with the RNA component of SRP to form the Alu domain, which is the region of SRP responsible for arrest of nascent chain elongation during membrane targeting; homolog of mammalian SRP14, Chr IV from 292781-293221, Verified ORF
YLR017W	10.72	1.00	8	1043.2781	1	YLR017W	MEU1 SGDID:S000004007,Methylthioadenosine phosphorylase (MTAP), catalyzes the initial step in the methionine salvage pathway; affects polyamine biosynthesis through regulation of ornithine decarboxylase (Spe1p) activity; regulates ADH2 gene expression, Chr XII from 177607-178620, Verified ORF
YOR096W	9.549	1.00	185	27084.3705	1	YOR096W	RPS7A SGDID:S000005622,Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Bp; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins, Chr XV from 505795-505938,506340-506768, Verified ORF
YBR029C	12.358	1.00	24	2714.9883	1	YBR029C	CDS1 SGDID:S000000233,Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); an enzyme that catalyzes that conversion of CTP + phosphate into diphosphate + CDP-diaclglyerol, a critical step in the synthesis of all major yeast phospholipids, Chr II from 297742-296369, reverse complement, Verified ORF
YPR186C	15.83	0.67	8	473.3569	1	YPR186C	PZF1 SGDID:S000006390,Transcription factor IIIA (TFIIIA), essential protein with nine C2H2 Zn-fingers, binds the 5S rRNA gene through the zinc finger domain and directs assembly of a multiprotein initiation complex for RNA polymerase III; also binds DNA, Chr XVI from 911018-909729, reverse complement, Verified ORF
YDL136W	2.61	1.00	37	19818.2877	2	YDL191W,YDL136W	RPL35B SGDID:S000002295,Protein component of the large (60S) ribosomal subunit, identical to Rpl35Ap and has similarity to rat L35 ribosomal protein, Chr IV from 217600-217602,218008-218367, Verified ORF
YDL216C	12.83	0.74	1	80.6324	1	YDL216C	RRI1 SGDID:S000002375,Catalytic subunit of the COP9 signalosome (CSN) complex that acts as an isopeptidase in cleaving the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; metalloendopeptidase involved in the adaptation to pheromone signaling, Chr IV from 70320-68998, reverse complement, Verified ORF
YHR182W	37.77	1.00	10	370.1331	1	YHR182W	YHR182W SGDID:S000001225,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and cytoplasm, Chr VIII from 468219-470576, Uncharacterized ORF
YGR098C	53.608	0.99	15	387.2592	1	YGR098C	ESP1 SGDID:S000003330,Separase with cysteine protease activity (related to caspases) that promotes sister chromatid separation by mediating dissociation of the cohesin Scc1p from chromatin; inhibited by Pds1p, Chr VII from 687462-682570, reverse complement, Verified ORF
YER025W	23.019	1.00	125	7591.5153	1	YER025W	GCD11 SGDID:S000000827,Gamma subunit of the translation initiation factor eIF2, involved in the identification of the start codon; binds GTP when forming the ternary complex with GTP and tRNAi-Met, Chr V from 205250-206833, Verified ORF
YLR088W	15.97	0.99	3	259.9898	1	YLR088W	GAA1 SGDID:S000004078,Subunit of the GPI (glycosylphosphatidylinositol):protein transamidase complex, removes the GPI-anchoring signal and attaches GPI to proteins in the ER, Chr XII from 316108-317952, Verified ORF
YHR008C	8.01	1.00	17	2967.0257	1	YHR008C	SOD2 SGDID:S000001050,Manganese-containing superoxide dismutase; protects cells against oxygen toxicity, Chr VIII from 123585-122884, reverse complement, Verified ORF
YML111W	35.532	0.73	1	28.7215	1	YML111W	BUL2 SGDID:S000004579,Component of the Rsp5p E3-ubiquitin ligase complex, involved in intracellular amino acid permease sorting, functions in heat shock element mediated gene expression, essential for growth in stress conditions, functional homolog of BUL1, Chr XIII from 46942-49704, Verified ORF
YMR016C	20.93	0.67	2	89.5035	1	YMR016C	SOK2 SGDID:S000004618,Nuclear protein that plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; negatively regulates pseudohyphal differentiation; homologous to several transcription factors, Chr XIII from 305592-303235, reverse complement, Verified ORF
YPR149W	4.27	0.88	9	2592.9982	1	YPR149W	NCE102 SGDID:S000006353,Protein of unknown function; contains transmembrane domains; involved in secretion of proteins that lack classical secretory signal sequences; component of the detergent-insoluble glycolipid-enriched complexes (DIGs), Chr XVI from 829914-830435, Verified ORF
YNL306W	13.35	0.81	1	84.822	1	YNL306W	MRPS18 SGDID:S000005250,Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mitoribosomal proteins, Chr XIV from 58155-58808, Verified ORF
YCR024C-A	0.09	0.85	2	26406.5293	1	YCR024C-A	PMP1 SGDID:S000000619,Small single-membrane span proteolipid that functions as a regulatory subunit of the plasma membrane H(+)-ATPase Pma1p, forms unique helix and positively charged cytoplasmic domain that is able to specifically segregate phosphatidylserines, Chr III from 163063-162941, reverse complement, Verified ORF
YOR056C	10.98	0.99	2	252.097	1	YOR056C	NOB1 SGDID:S000005582,Essential nuclear protein involved in proteasome maturation and synthesis of 40S ribosomal subunits; required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA, Chr XV from 431628-430249, reverse complement, Verified ORF
YGL011C	14.21	1.00	13	1278.9518	1	YGL011C	SCL1 SGDID:S000002979,Alpha subunit of the 20S core complex of the 26S proteasome involved in the degradation of ubiquitinated substrates; essential for growth; detected in the mitochondria, Chr VII from 475252-474494, reverse complement, Verified ORF
YBL017C	57.688	1.00	3	72.701	1	YBL017C	PEP1 SGDID:S000000113,Type I transmembrane sorting receptor for multiple vacuolar hydrolases; cycles between the late-Golgi and prevacuolar endosome-like compartments, Chr II from 191586-186847, reverse complement, Verified ORF
YBR034C	12.758	1.00	6	657.4664	1	YBR034C	HMT1 SGDID:S000000238,Nuclear SAM-dependent mono- and asymmetric arginine dimethylating methyltransferase that modifies hnRNPs, including Npl3p and Hrp1p, thus facilitating nuclear export of these proteins; required for viability of npl3 mutants, Chr II from 305976-304930, reverse complement, Verified ORF
YBR133C	27.65	0.99	6	300.3282	1	YBR133C	HSL7 SGDID:S000000337,Protein arginine N-methyltransferase that exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p, Chr II from 504281-501798, reverse complement, Verified ORF
YGL238W	35.02	1.00	20	798.3967	1	YGL238W	CSE1 SGDID:S000003207,Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p), homolog of metazoan CAS protein, required for accurate chromosome segregation, Chr VII from 49552-52434, Verified ORF
YGR229C	15.23	1.00	23	2111.2168	1	YGR229C	SMI1 SGDID:S000003461,Protein involved in the regulation of cell wall synthesis; proposed to be involved in coordinating cell cycle progression with cell wall integrity, Chr VII from 950902-949385, reverse complement, Verified ORF
YBL091C	17.02	1.00	5	410.6911	1	YBL091C	MAP2 SGDID:S000000187,Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p, Chr II from 48625-47360, reverse complement, Verified ORF
YGL205W	37.559	0.94	6	209.9278	1	YGL205W	POX1 SGDID:S000003173,Fatty-acyl coenzyme A oxidase, involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix, Chr VII from 108162-110408, Verified ORF
YER048C	22.05	1.00	21	1331.4216	1	YER048C	CAJ1 SGDID:S000000850,Nuclear type II J heat shock protein of the E. coli dnaJ family, contains a leucine zipper-like motif, binds to non-native substrates for presentation to Ssa3p, may function during protein translocation, assembly and disassembly, Chr V from 248156-246981, reverse complement, Verified ORF
YJR119C	24.13	0.77	1	44.6106	1	YJR119C	YJR119C SGDID:S000003880,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus, Chr X from 646406-644220, reverse complement, Uncharacterized ORF
YGR124W	23.889	1.00	163	9538.8176	1	YGR124W	ASN2 SGDID:S000003356,Asparagine synthetase, isozyme of Asn1p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway, Chr VII from 739949-741667, Verified ORF
YHR169W	16.5	0.65	1	55.0724	1	YHR169W	DBP8 SGDID:S000001212,Putative ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 40S ribosomal subunit, Chr VIII from 442182-443477, Verified ORF
YLR300W	13.76	1.00	12	1219.1797	1	YLR300W	EXG1 SGDID:S000004291,Major exo-1,3-beta-glucanase of the cell wall, involved in cell wall beta-glucan assembly; exists as three differentially glycosylated isoenzymes, Chr XII from 728957-730303, Verified ORF
YLR321C	11.23	0.99	2	246.4849	1	YLR321C	SFH1 SGDID:S000004313,Subunit of the RSC chromatin remodeling complex required for kinetochore function in chromosome segregation; essential gene required for cell cycle progression; phosphorylated in the G1 phase of the cell cycle; Snf5p paralog, Chr XII from 777864-776584, reverse complement, Verified ORF
YIL125W	42.745	1.00	54	1766.0921	1	YIL125W	KGD1 SGDID:S000001387,Component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes a key step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to form succinyl-CoA, Chr IX from 122689-125733, Verified ORF
YOR350C	28.758	0.96	6	280.0068	1	YOR350C	MNE1 SGDID:S000005877,Mitochondrial protein similar to Lucilia illustris mitochondrial cytochrome oxidase, Chr XV from 994852-992861, reverse complement, Verified ORF
YOR051C	18.287	1.00	12	917.3682	1	YOR051C	YOR051C SGDID:S000005577,Nuclear protein that inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts, Chr XV from 426086-424848, reverse complement, Uncharacterized ORF
YOR270C	28.76	1.00	67	3256.798	1	YOR270C	VPH1 SGDID:S000005796,Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V-ATPase complexes of the vacuole while Stv1p is located in V-ATPase complexes of the Golgi and endosomes, Chr XV from 830573-828051, reverse complement, Verified ORF
YDL173W	11.12	1.00	4	502.875	1	YDL173W	YDL173W SGDID:S000002332,Hypothetical protein, Chr IV from 148192-149079, Uncharacterized ORF
YPR112C	54.558	1.00	28	717.4712	1	YPR112C	MRD1 SGDID:S000006316,Essential conserved protein that associates with 35S precursor rRNA and is required for its initial processing at the A(0)-A(2) cleavage sites, shows partial nucleolar localization, contains five consensus RNA-binding domains, Chr XVI from 751917-749254, reverse complement, Verified ORF
YNR038W	29.85	0.98	2	91.7944	1	YNR038W	DBP6 SGDID:S000005321,Essential protein involved in ribosome biogenesis; putative ATP-dependent RNA helicase of the DEAD-box protein family, Chr XIV from 695597-697486, Verified ORF
YLR304C	29.787	1.00	152	7133.8132	1	YLR304C	ACO1 SGDID:S000004295,Aconitase, required for the tricarboxylic acid (TCA) cycle and also independently required for mitochondrial genome maintenance; component of the mitochondrial nucleoid; mutation leads to glutamate auxotrophy, Chr XII from 737550-735214, reverse complement, Verified ORF
YDL192W	10.47	1.00	85	11349.5111	1	YDL192W	ARF1 SGDID:S000002351,ADP-ribosylation factor, GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; functionally interchangeable with Arf2p, Chr IV from 116322-116867, Verified ORF
YDR473C	21.239	0.85	3	167.846	1	YDR473C	PRP3 SGDID:S000002881,Splicing factor, component of the U4\U6-U5 snRNP complex, Chr IV from 1405846-1404437, reverse complement, Verified ORF
YLR058C	19.61	1.00	164	11691.5251	1	YLR058C	SHM2 SGDID:S000004048,Cytosolic serine hydroxymethyltransferase, involved in one-carbon metabolism, Chr XII from 259402-257993, reverse complement, Verified ORF
YLR028C	32.638	1.00	54	2312.9973	1	YLR028C	ADE16 SGDID:S000004018,Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade17p; ade16 ade17 mutants require adenine and histidine, Chr XII from 201316-199541, reverse complement, Verified ORF
YKL178C	10.8	0.98	1	126.8548	1	YKL178C	STE3 SGDID:S000001661,Receptor for a factor receptor, transcribed in alpha cells and required for mating by alpha cells, couples to MAP kinase cascade to mediate pheromone response; ligand bound receptors are endocytosed and recycled to the plasma membrane; GPCR, Chr XI from 114632-113220, reverse complement, Verified ORF
YDL044C	24.8	0.96	7	378.8109	1	YDL044C	MTF2 SGDID:S000002202,Mitochondrial matrix protein that interacts with an N-terminal region of mitochondrial RNA polymerase (Rpo41p) and couples RNA processing and translation to transcription, Chr IV from 375286-373964, reverse complement, Verified ORF
YFR053C	27.62	1.00	62	3138.1444	1	YFR053C	HXK1 SGDID:S000001949,Hexokinase isoenzyme 1, a cytosolic protein that catalyzes phosphorylation of glucose during glucose metabolism; expression is highest during growth on non-glucose carbon sources; glucose-induced repression involves the hexokinase Hxk2p, Chr VI from 255036-253579, reverse complement, Verified ORF
YIL109C	26.52	1.00	47	2477.5889	1	YIL109C	SEC24 SGDID:S000001371,Component of the Sec23p-Sec24p heterodimeric complex of the COPII vesicle coat; involved in ER to Golgi transport, cargo selection and autophagy; required for the binding of the Sec13 complex to ER membranes; homologous to Lst1p and Lss1p, Chr IX from 160162-157382, reverse complement, Verified ORF
YNL110C	8.46	1.00	15	2478.7105	1	YNL110C	NOP15 SGDID:S000005054,Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis; localizes to both nucleolus and cytoplasm, Chr XIV from 418490-417828, reverse complement, Verified ORF
YDR148C	21.61	0.99	3	192.135	1	YDR148C	KGD2 SGDID:S000002555,Dihydrolipoyl transsuccinylase, a component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes a step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA, Chr IV from 755063-753672, reverse complement, Verified ORF
YNL271C	89.759	0.99	12	185.0305	1	YNL271C	BNI1 SGDID:S000005215,Formin, nucleates the formation of linear actin filaments, involved in cell processes such as budding and mitotic spindle orientation which require the formation of polarized actin cables, functionally redundant with BNR1, Chr XIV from 135384-129523, reverse complement, Verified ORF
YNL270C	12.47	0.91	1	102.0187	1	YNL270C	ALP1 SGDID:S000005214,Basic amino acid transporter, involved in uptake of cationic amino acids, Chr XIV from 137662-135941, reverse complement, Verified ORF
YOR001W	30.308	0.99	19	867.6337	1	YOR001W	RRP6 SGDID:S000005527,Exonuclease component of the nuclear exosome; contributes to the quality-control system that retains and degrades aberrant mRNAs in the nucleus, Chr XV from 326833-329034, Verified ORF
YCR009C	12.879	1.00	12	1302.5788	1	YCR009C	RVS161 SGDID:S000000602,Amphiphysin-like lipid raft protein; subunit of a complex (Rvs161p-Rvs167p) that regulates polarization of the actin cytoskeleton, endocytosis, cell polarity, cell fusion and viability following starvation or osmotic stress, Chr III from 131540-130743, reverse complement, Verified ORF
YOR207C	44.175	1.00	20	632.9338	1	YOR207C	RET1 SGDID:S000005733,Second-largest subunit of RNA polymerase III, which is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs, Chr XV from 733458-730009, reverse complement, Verified ORF
YKL040C	11.219	1.00	19	2367.5783	1	YKL040C	NFU1 SGDID:S000001523,Protein involved in iron metabolism in mitochondria; similar to NifU, which is a protein required for the maturation of the Fe\S clusters of nitrogenase in nitrogen-fixing bacteria, Chr XI from 361471-360701, reverse complement, Verified ORF
YNL157W	6.47	0.88	2	380.2885	1	YNL157W	YNL157W SGDID:S000005101,Hypothetical protein, Chr XIV from 340354-340860, Uncharacterized ORF
YGL023C	28.09	0.97	5	241.3764	1	YGL023C	PIB2 SGDID:S000002991,Protein binding phosphatidylinositol 3-phosphate, involved in telomere-proximal repression of gene expression; similar to Fab1 and Vps27, Chr VII from 452109-450202, reverse complement, Verified ORF
YBL066C	42.655	1.00	4	131.0976	1	YBL066C	SEF1 SGDID:S000000162,Putative transcription factor, has homolog in Kluyveromyces lactis, Chr II from 100117-96671, reverse complement, Verified ORF
YLR091W	13.9	0.97	1	97.5577	1	YLR091W	YLR091W SGDID:S000004081,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YLR091W is not an esssential gene, Chr XII from 322298-323179, Uncharacterized ORF
YLR087C	104.546	1.00	14	187.2084	1	YLR087C	CSF1 SGDID:S000004077,Protein required for fermentation at low temperature, Chr XII from 315732-306856, reverse complement, Verified ORF
YAL012W	14.05	1.00	234	23283.2952	1	YAL012W	CYS3 SGDID:S000000010,Cystathionine gamma-lyase, catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine;, Chr I from 130802-131986, Verified ORF
YNR051C	17.15	0.67	1	54.6154	1	YNR051C	BRE5 SGDID:S000005334,Ubiquitin protease cofactor, forms deubiquitination complex with Ubp3p that coregulates anterograde and retrograde transport between the endoplasmic reticulum and Golgi compartments; null is sensitive to brefeldin A, Chr XIV from 718329-716782, reverse complement, Verified ORF
YGL244W	22.75	0.96	3	176.9766	1	YGL244W	RTF1 SGDID:S000003213,Subunit of the RNA polymerase II-associated Paf1 complex; directly or indirectly regulates DNA-binding properties of Spt15p and relative activities of different TATA elements; involved in telomere maintenance, Chr VII from 41498-43174, Verified ORF
YJR068W	19.249	0.97	1	70.4479	1	YJR068W	RFC2 SGDID:S000003829,Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon, Chr X from 567558-568619, Verified ORF
YLR134W	18.26	1.00	66	5052.9857	1	YLR134W	PDC5 SGDID:S000004124,Minor isoform of pyruvate decarboxylase, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde, regulation is glucose- and ethanol-dependent, repressed by thiamine, involved in amino acid catabolism, Chr XII from 410724-412415, Verified ORF
YDR538W	11.12	0.95	1	119.4328	1	YDR538W	PAD1 SGDID:S000002946,Phenylacrylic acid decarboxylase, confers resistance to cinnamic acid, decarboxylates aromatic carboxylic acids to the corresponding vinyl derivatives, Chr IV from 1510892-1511620, Verified ORF
YCL035C	6.748	1.00	12	2486.057	1	YCL035C	GRX1 SGDID:S000000540,Hydroperoxide and superoxide-radical responsive heat-stable glutathione-dependent disulfide oxidoreductase with active site cysteine pair; protects cells from oxidative damage, Chr III from 61173-60841, reverse complement, Verified ORF
YDL168W	8.7	1.00	4	642.7552	1	YDL168W	SFA1 SGDID:S000002327,Bifunctional enzyme containing both alcohol dehydrogenase and glutathione-dependent formaldehyde dehydrogenase activities, functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p, Chr IV from 159605-160765, Verified ORF
YPR163C	25.35	1.00	137	7555.2269	1	YPR163C	TIF3 SGDID:S000006367,Translation initiation factor eIF-4B, has RNA annealing activity; contains an RNA recognition motif and binds to single-stranded RNA, Chr XVI from 869951-868641, reverse complement, Verified ORF
YMR311C	13.45	1.00	15	1559.0996	1	YMR311C	GLC8 SGDID:S000004928,Regulatory subunit of protein phosphatase 1 (Glc7p), involved in glycogen metabolism and chromosome segregation; proposed to regulate Glc7p activity via conformational alteration; ortholog of the mammalian protein phosphatase inhibitor 2, Chr XIII from 897602-896913, reverse complement, Verified ORF
YHL008C	23.39	0.68	3	121.9283	1	YHL008C	YHL008C SGDID:S000001000,Putative protein of unknown function, does not appear to be involved in monocarboxylic acid transport; green fluorescent protein (GFP)-fusion protein localizes to the vacuole, Chr VIII from 94506-92623, reverse complement, Uncharacterized ORF
YKR067W	29.939	0.82	7	268.0275	1	YKR067W	GPT2 SGDID:S000001775,Glycerol-3-phosphate acyltransferase located in both lipid particles and the ER; involved in the stepwise acylation of glycerol-3-phosphate and dihydroxyacetone, which are intermediate steps in lipid biosynthesis, Chr XI from 567560-569791, Verified ORF
YAL019W	44.749	0.98	7	214.3116	1	YAL019W	FUN30 SGDID:S000000017,Protein whose overexpression affects chromosome stability, potential Cdc28p substrate; homolog of Snf2p, Chr I from 114920-118315, Verified ORF
YDR170C	66.45	1.00	6	126.2295	1	YDR170C	SEC7 SGDID:S000002577,Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors involved in proliferation of the Golgi, intra-Golgi transport and ER-to-Golgi transport; found in the cytoplasm and on Golgi-associated coated vesicles, Chr IV from 802219-796190, reverse complement, Verified ORF
YDL124W	18.34	1.00	12	914.7171	1	YDL124W	YDL124W SGDID:S000002282,NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters, Chr IV from 240259-241197, Verified ORF
YIL138C	13.18	1.00	9	954.6232	1	YIL138C	TPM2 SGDID:S000001400,Minor isoform of tropomyosin, binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; appears to have distinct and also overlapping functions with Tpm1p, Chr IX from 89715-89230, reverse complement, Verified ORF
YOL064C	16.79	1.00	5	416.317	1	YOL064C	MET22 SGDID:S000005425,Bisphosphate-3'-nucleotidase, involved in salt tolerance and methionine biogenesis; dephosphorylates 3'-phosphoadenosine-5'-phosphate and 3'-phosphoadenosine-5'-phosphosulfate, intermediates of the sulfate assimilation pathway, Chr XV from 207176-206103, reverse complement, Verified ORF
YER091C	41.92	1.00	424	14140.0027	1	YER091C	MET6 SGDID:S000000893,Cobalamin-independent methionine synthase, involved in amino acid biosynthesis; requires a minimum of two glutamates on the methyltetrahydrofolate substrate, similar to bacterial metE homologs, Chr V from 342163-339860, reverse complement, Verified ORF
YOL092W	3.52	1.00	10	3971.5702	1	YOL092W	YOL092W SGDID:S000005452,Hypothetical protein, Chr XV from 144204-145130, Uncharacterized ORF
YEL037C	14.09	1.00	30	2976.5636	1	YEL037C	RAD23 SGDID:S000000763,Protein with ubiquitin-like N terminus, recognizes and binds damaged DNA (with Rad4p) during nucleotide excision repair; regulates Rad4p levels, subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human HR23A and HR23B proteins, Chr V from 82603-81407, reverse complement, Verified ORF
YIL062C	8.5	1.00	16	2631.5157	1	YIL062C	ARC15 SGDID:S000001324,Subunit of the ARP2\3 complex, which is required for the motility and integrity of cortical actin patches, Chr IX from 244459-243995, reverse complement, Verified ORF
YML091C	47.2799999999999	0.88	4	104.0806	1	YML091C	RPM2 SGDID:S000004556,Protein component of mitochondrial RNase P, along with the mitochondrially-encoded RNA subunit RPM1; Rnase P removes 5' extensions from tRNA precursors; Rpm2p is also involved in maturation of RPM1 and in translation of mitochondrial mRNAs, Chr XIII from 90731-87123, reverse complement, Verified ORF
YAL017W	60.378	0.80	1	18.5232	1	YAL017W	PSK1 SGDID:S000000015,One of two (see also PSK2) PAS domain containing S\T protein kinases; coordinately regulates protein synthesis and carbohydrate metabolism and storage in response to a unknown metabolite that reflects nutritional status, Chr I from 120226-124296, Verified ORF
YMR129W	55.484	0.99	6	149.6661	1	YMR129W	POM152 SGDID:S000004736,Nuclear pore membrane glycoprotein; may be involved in duplication of nuclear pores and nuclear pore complexes during S-phase;, Chr XIII from 527803-531816, Verified ORF
YLR153C	21.35	1.00	50	3273.9876	1	YLR153C	ACS2 SGDID:S000004143,Acetyl-coA synthetase isoform, required for growth on glucose; expressed under anaerobic conditions, Chr XII from 447576-445525, reverse complement, Verified ORF
YOL128C	17.4	0.65	3	156.6715	1	YOL128C	YGK3 SGDID:S000005488,Protein kinase related to mammalian glycogen synthase kinases of the GSK-3 family; GSK-3 homologs (Mck1p, Rim11p, Mrk1p, Ygk3p) are involved in control of Msn2p-dependent transcription of stress responsive genes and in protein degradation, Chr XV from 79479-78352, reverse complement, Verified ORF
YGR184C	60.325	0.99	12	275.3112	1	YGR184C	UBR1 SGDID:S000003416,Ubiquitin-protein ligase (E3) that interacts with Rad6p\Ubc2p to ubiquitinate substrates of the N-end rule pathway; binds to the Rpn2p, Rpt1p, and Rpt6p proteins of the 19S particle of the 26S proteasome, Chr VII from 865758-859906, reverse complement, Verified ORF
YKL039W	9.26	0.72	1	108.6992	1	YKL039W	PTM1 SGDID:S000001522,Protein of unknown function, copurifies with late Golgi vesicles containing the v-SNARE Tlg2p, Chr XI from 362265-363836, Verified ORF
YDR218C	22.21	0.81	2	101.9697	1	YDR218C	SPR28 SGDID:S000002626,Sporulation-specific homolog of the yeast CDC3\10\11\12 family of bud neck microfilament genes; meiotic septin expressed at high levels during meiotic divisions and ascospore formation, Chr IV from 905048-903777, reverse complement, Verified ORF
YKR024C	33.218	0.76	9	287.8641	1	YKR024C	DBP7 SGDID:S000001732,Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis, Chr XI from 487015-484787, reverse complement, Verified ORF
YCR093W	95.2350000000001	1.00	23	337.6262	1	YCR093W	CDC39 SGDID:S000000689,Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor, Chr III from 280114-286440, Verified ORF
YBR142W	34.386	1.00	8	325.2469	1	YBR142W	MAK5 SGDID:S000000346,Essential nucleolar protein, putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits, Chr II from 528311-530632, Verified ORF
YMR300C	17.375	1.00	17	1367.8202	1	YMR300C	ADE4 SGDID:S000004915,Phosphoribosylpyrophosphate amidotransferase (PRPPAT; amidophosphoribosyltransferase), catalyzes first step of the 'de novo' purine nucleotide biosynthetic pathway, Chr XIII from 867090-865558, reverse complement, Verified ORF
YDL004W	4.16	1.00	15	5040.8391	1	YDL004W	ATP16 SGDID:S000002162,Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis, Chr IV from 443026-443508, Verified ORF
YMR011W	8.44	1.00	18	2981.501	1	YMR011W	HXT2 SGDID:S000004613,High-affinity glucose transporter of the major facilitator superfamily, expression is induced by low levels of glucose and repressed by high levels of glucose, Chr XIII from 288078-289703, Verified ORF
YOL150C	5.67	0.99	2	488.1879	1	YOL150C	YOL150C SGDID:S000005510,Hypothetical protein, Chr XV from 44783-44472, reverse complement, Dubious ORF
YNL127W	45.188	0.99	9	275.6509	1	YNL127W	FAR11 SGDID:S000005071,Protein involved in G1 cell cycle arrest in response to pheromone, in a pathway different from the Far1p-dependent pathway; interacts with Far3p, Far7p, Far8p, Far9p, and Far10p, Chr XIV from 383989-386850, Verified ORF
YJR086W	2.66	0.68	3	1072.1447	1	YJR086W	STE18 SGDID:S000003846,G protein gamma subunit, forms a dimer with Ste4p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste4p to dampen signaling; C-terminus is palmitoylated and farnesylated, which are required for normal signaling, Chr X from 585983-586315, Verified ORF
YLR008C	4.838	0.99	5	1430.3563	1	YLR008C	PAM18 SGDID:S000003998,Constituent of the mitochondrial import motor associated with the presequence translocase, along with Ssc1p, Tim44p, Mge1p, and Pam16p; stimulates the ATPase activity of Ssc1p to drive mitochondrial import; contains a J domain, Chr XII from 166082-165576, reverse complement, Verified ORF
YOR188W	48.46	1.00	8	230.787	1	YOR188W	MSB1 SGDID:S000005714,Protein involved in positive regulation of both 1,3-beta-glucan synthesis and the Pkc1p-MAPK pathway, potential Cdc28p substrate; multicopy suppressor of temperature-sensitive mutations in CDC24 and CDC42, and of mutations in BEM4, Chr XV from 685768-689181, Verified ORF
YCL051W	22.77	0.65	6	239.4453	1	YCL051W	LRE1 SGDID:S000000556,Protein involved in control of cell wall structure and stress response; inhibits Cbk1p protein kinase activity; overproduction confers resistance to cell-wall degrading enzymes, Chr III from 35865-37616, Verified ORF
YLR418C	15.95	0.66	2	115.6959	1	YLR418C	CDC73 SGDID:S000004410,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p, distinct from Srb-containing Pol II complexes; required for expression of certain genes, modification of some histones, and telomere maintenance, Chr XII from 958092-956911, reverse complement, Verified ORF
YMR205C	28.68	1.00	246	11991.151	1	YMR205C	PFK2 SGDID:S000004818,Beta subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes, Chr XIII from 674765-671886, reverse complement, Verified ORF
YHR024C	17.41	0.81	1	65.0415	1	YHR024C	MAS2 SGDID:S000001066,Larger subunit of the mitochondrial processing protease, essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins, Chr VIII from 159185-157737, reverse complement, Verified ORF
YKR008W	29.673	0.87	4	163.9542	1	YKR008W	RSC4 SGDID:S000001716,One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex; found in close proximity to nucleosomal DNA; displaced from the surface of nucleosomal DNA after chromatin remodeling, Chr XI from 451844-453721, Verified ORF
YPR089W	21.39	0.65	2	84.9644	1	YPR089W	YPR089W SGDID:S000006293,Hypothetical protein, Chr XVI from 713273-715939, Uncharacterized ORF
YGR211W	18.62	1.00	10	750.8016	1	YGR211W	ZPR1 SGDID:S000003443,Essential protein with two zinc fingers, present in the nucleus of growing cells but relocates to the cytoplasm in starved cells via a process mediated by Cpr1p; binds to translation elongation factor eEF-1 (Tef1p), Chr VII from 915246-916706, Verified ORF
YER100W	9.59	1.00	11	1603.537	1	YER100W	UBC6 SGDID:S000000902,Ubiquitin-conjugating enzyme involved in ER-associated protein degradation; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway, Chr V from 359558-360310, Verified ORF
YNL131W	6.24	1.00	7	1568.261	1	YNL131W	TOM22 SGDID:S000005075,Component of the TOM (translocase of outer membrane) complex responsible for initial import of mitochondrially directed proteins; acts as a receptor for precursor proteins and mediates interaction between the TOM and TIM complexes, Chr XIV from 378769-379227, Verified ORF
YFL048C	20.249	1.00	9	621.3607	1	YFL048C	EMP47 SGDID:S000001846,Integral membrane component of endoplasmic reticulum-derived COPII-coated vesicles, which function in ER to Golgi transport, Chr VI from 40180-38843, reverse complement, Verified ORF
YBR247C	26.604	1.00	21	1103.5125	1	YBR247C	ENP1 SGDID:S000000451,Protein associated with U3 and U14 snoRNAs, required for pre-rRNA processing and 40S ribosomal subunit synthesis; localized in the nucleus and concentrated in the nucleolus, Chr II from 714450-712999, reverse complement, Verified ORF
YPR117W	104.927	1.00	15	199.8521	1	YPR117W	YPR117W SGDID:S000006321,Hypothetical protein, Chr XVI from 760023-767492, Uncharacterized ORF
YLR024C	62.33	1.00	10	224.2889	1	YLR024C	UBR2 SGDID:S000004014,Cytoplasmic ubiquitin-protein ligase (E3), Chr XII from 193282-187664, reverse complement, Verified ORF
YKR026C	12.068	0.77	3	267.5972	1	YKR026C	GCN3 SGDID:S000001734,Alpha subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a positive regulator of GCN4 expression, Chr XI from 489298-488381, reverse complement, Verified ORF
YMR194W	4.01	1.00	87	30330.5155	2	YMR194W,YPL249C-A	RPL36A SGDID:S000004807,N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Bp and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA, Chr XIII from 651144-651159,651623-651909, Verified ORF
YJL172W	16.76	1.00	5	417.0622	1	YJL172W	CPS1 SGDID:S000003708,Vacuolar carboxypeptidase yscS; expression is induced under low-nitrogen conditions, Chr X from 97731-99461, Verified ORF
YMR215W	20.73	1.00	14	944.134	1	YMR215W	GAS3 SGDID:S000004828,Putative 1,3-beta-glucanosyltransferase, has similarity to Gas1p; localizes to the cell wall, Chr XIII from 696795-698369, Verified ORF
YLL024C	27.055	1.00	909	46970.0754	1	YLL024C	SSA2 SGDID:S000003947,ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall, Chr XII from 97484-95565, reverse complement, Verified ORF
YCL009C	11.12	1.00	31	3897.2818	1	YCL009C	ILV6 SGDID:S000000515,Regulatory subunit of acetolactate synthase, which catalyzes the first step of branched-chain amino acid biosynthesis; enhances activity of the Ilv2p catalytic subunit, localizes to mitochondria, Chr III from 105548-104619, reverse complement, Verified ORF
YEL047C	24.096	1.00	34	1972.5993	1	YEL047C	YEL047C SGDID:S000000773,Fumurate ReDuctase Soluble, Chr V from 66797-65385, reverse complement, Uncharacterized ORF
YKL016C	7.65	1.00	4	730.9765	1	YKL016C	ATP7 SGDID:S000001499,Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis, Chr XI from 407632-407108, reverse complement, Verified ORF
YKL060C	15.38	1.00	828	75262.5474	1	YKL060C	FBA1 SGDID:S000001543,Fructose 1,6-bisphosphate aldolase, a cytosolic enzyme required for glycolysis and gluconeogenesis; catalyzes the conversion of fructose 1,6 bisphosphate into two 3-carbon products: glyceraldehyde-3-phosphate and dihydroxyacetone phosphate, Chr XI from 327131-326052, reverse complement, Verified ORF
YPR058W	11	1.00	4	508.3609	1	YPR058W	YMC1 SGDID:S000006262,Putative mitochondrial inner membrane transporter, member of the mitochondrial carrier (MCF) family, Chr XVI from 673748-674671, Verified ORF
YLR347C	21.9	1.00	45	2872.5877	1	YLR347C	KAP95 SGDID:S000004339,Karyopherin beta, forms a dimeric complex with Srp1p (Kap60p) that mediates nuclear import of cargo proteins via a nuclear localization signal (NLS), interacts with nucleoporins to guide transport across the nuclear pore complex, Chr XII from 826412-823827, reverse complement, Verified ORF
YMR202W	2.29	1.00	15	9157.1576	1	YMR202W	ERG2 SGDID:S000004815,C-8 sterol isomerase, catalyzes the isomerization of the delta-8 double bond to the delta-7 position at an intermediate step in ergosterol biosynthesis, Chr XIII from 667536-668204, Verified ORF
YDR159W	54.109	0.94	9	218.5776	1	YDR159W	SAC3 SGDID:S000002566,Nuclear pore-associated protein, forms a complex with Thp1p that is involved in transcription and in mRNA export from the nucleus, Chr IV from 771874-775779, Verified ORF
YGL019W	7.44	1.00	6	1127.4134	1	YGL019W	CKB1 SGDID:S000002987,Beta regulatory subunit of casein kinase 2, a Ser\Thr protein kinase with roles in cell growth and proliferation; the holoenzyme also contains CKA1, CKA2 and CKB2, the many substrates include transcription factors and all RNA polymerases, Chr VII from 458161-458997, Verified ORF
YHR172W	39.34	0.99	7	246.2656	1	YHR172W	SPC97 SGDID:S000001215,Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque, Chr VIII from 448335-450806, Verified ORF
YGL187C	6.31	1.00	8	1772.4155	1	YGL187C	COX4 SGDID:S000003155,Subunit IV of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; N-terminal 25 residues of precursor are cleaved during mitochondrial import, Chr VII from 150177-149710, reverse complement, Verified ORF
YHR183W	23.94	1.00	252	14715.7129	1	YHR183W	GND1 SGDID:S000001226,6-phosphogluconate dehydrogenase (decarboxylating), catalyzes an NADPH regenerating reaction in the pentose phosphate pathway; required for growth on D-glucono-delta-lactone and adaptation to oxidative stress, Chr VIII from 470960-472429, Verified ORF
YIL013C	37.967	0.79	4	116.3551	1	YIL013C	PDR11 SGDID:S000001275,Membrane protein of the ATP-binding cassette (ABC) transporter superfamily, involved in multiple drug resistance, mediates sterol uptake when sterol biosynthesis is compromised, regulated by Pdr1p, required for anaerobic growth, Chr IX from 332440-328205, reverse complement, Verified ORF
YER144C	19.34	0.80	1	57.828	1	YER144C	UBP5 SGDID:S000000946,Putative ubiquitin-specific protease that does not associate with the proteasome, Chr V from 460218-457801, reverse complement, Verified ORF
YLR250W	11.667	0.99	8	949.0102	1	YLR250W	SSP120 SGDID:S000004240,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern, Chr XII from 640319-641023, Verified ORF
YDR485C	32.07	1.00	2	87.1838	1	YDR485C	VPS72 SGDID:S000002893,Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for vacuolar protein sorting, Chr IV from 1427199-1424812, reverse complement, Verified ORF
YDR239C	41.075	1.00	22	748.7727	1	YDR239C	YDR239C SGDID:S000002647,Hypothetical protein, Chr IV from 943416-941053, reverse complement, Uncharacterized ORF
YGR245C	31.118	1.00	18	808.6595	1	YGR245C	SDA1 SGDID:S000003477,Highly conserved nuclear protein required for actin cytoskeleton organization and passage through Start, plays a critical role in G1 events, binds Nap1p, also involved in 60S ribosome biogenesis, Chr VII from 982073-979770, reverse complement, Verified ORF
YNL136W	19.69	0.97	2	137.7402	1	YNL136W	EAF7 SGDID:S000005080,Subunit of the NuA4 histone acetyltransferase complex, which acetylates the N-terminal tails of histones H4 and H2A, Chr XIV from 370370-371647, Verified ORF
YML016C	22.63	1.00	24	1482.6259	1	YML016C	PPZ1 SGDID:S000004478,Serine\threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance, Chr XIII from 241536-239458, reverse complement, Verified ORF
YGR258C	49.09	1.00	15	427.1723	1	YGR258C	RAD2 SGDID:S000003490,Single-stranded DNA endonuclease, cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein, Chr VII from 1010772-1007677, reverse complement, Verified ORF
YDL058W	92.93	1.00	9	135.3915	1	YDL058W	USO1 SGDID:S000002216,Essential protein involved in intracellular protein transport, coiled-coil protein necessary for transport from ER to Golgi; required for assembly of the ER-to-Golgi SNARE complex, Chr IV from 345665-351037, Verified ORF
YPL006W	26.5	0.74	1	39.0382	1	YPL006W	NCR1 SGDID:S000005927,Vacuolar membrane protein that transits through the biosynthetic vacuolar protein sorting pathway, involved in sphingolipid metabolism; glycoprotein and functional orthologue of human Niemann Pick C1 (NPC1) protein, Chr XVI from 544628-548140, Verified ORF
YEL058W	22.296	1.00	6	376.209	1	YEL058W	PCM1 SGDID:S000000784,Essential N-acetylglucosamine-phosphate mutase, a hexosephosphate mutase involved in the biosynthesis of chitin, Chr V from 43252-44925, Verified ORF
YGR181W	5.98	0.99	1	231.4402	1	YGR181W	TIM13 SGDID:S000003413,Mitochondrial intermembrane space protein, forms a complex with TIm8p that medates import and insertion of a subset of polytopic inner membrane proteins; may prevent aggregation of incoming proteins in a chaperone-like manner, Chr VII from 858292-858609, Verified ORF
YGR070W	43.02	1.00	13	422.4524	1	YGR070W	ROM1 SGDID:S000003302,GDP\GTP exchange protein (GEP) for Rho1p; mutations are synthetically lethal with mutations in rom2, which also encodes a GEP, Chr VII from 627810-631277, Verified ORF
YBL087C	7.72	1.00	164	29698.2911	2	YBL087C,YER117W	RPL23A SGDID:S000000183,Protein component of the large (60S) ribosomal subunit, identical to Rpl23Bp and has similarity to E. coli L14 and rat L23 ribosomal proteins, Chr II from 60735-60694,60189-59818, reverse complement, Verified ORF
YER007C-A	11.91	1.00	15	1760.6961	1	YER007C-A	YER007C-A SGDID:S000002957,Hypothetical protein, Chr V from 166884-166874,166770-166236, reverse complement, Uncharacterized ORF
YLR370C	6.26	0.97	2	433.2437	1	YLR370C	ARC18 SGDID:S000004362,Subunit of the ARP2\3 complex, which is required for the motility and integrity of cortical actin patches, Chr XII from 862253-861717, reverse complement, Verified ORF
YJL121C	6.208	1.00	21	4729.0346	1	YJL121C	RPE1 SGDID:S000003657,D-ribulose-5-phosphate 3-epimerase, catalyzes a reaction in the non-oxidative part of the pentose-phosphate pathway; mutants are sensitive to oxidative stress, Chr X from 191011-190295, reverse complement, Verified ORF
YPL212C	28.98	1.00	13	627.1188	1	YPL212C	PUS1 SGDID:S000006133,tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA; nuclear protein that appears to be involved in tRNA export; also acts on U2 snRNA, Chr XVI from 153148-151514, reverse complement, Verified ORF
YPL181W	16.17	0.92	1	79.5394	1	YPL181W	CTI6 SGDID:S000006102,Protein that relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain, Chr XVI from 203420-204940, Verified ORF
YOL077C	10.75	1.00	23	2991.0542	1	YOL077C	BRX1 SGDID:S000005437,Nucleolar protein, constituent of 66S pre-ribosomal particles; depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits; possesses a sigma(70)-like RNA-binding motif, Chr XV from 186723-185848, reverse complement, Verified ORF
YOR075W	13.02	0.88	9	850.3918	1	YOR075W	UFE1 SGDID:S000005601,t-SNARE required for ER membrane fusion and vesicular traffic, integral membrane protein that constitutes with Sec20p and Use1p the trimeric acceptor for R\v-SNAREs on Golgi-derived vesicles at the ER; part of Dsl1p complex, Chr XV from 468214-469254, Verified ORF
YOR220W	12.63	1.00	3	332.0647	1	YOR220W	YOR220W SGDID:S000005746,protein that interacts genetically with the Pat1 mRNA-decapping factor, Chr XV from 755329-756126, Uncharacterized ORF
YLR100W	17.59	1.00	10	794.7656	1	YLR100W	ERG27 SGDID:S000004090,3-keto sterol reductase, catalyzes the last of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants are sterol auxotrophs, Chr XII from 341811-342854, Verified ORF
YJL201W	22.56	0.99	6	368.0885	1	YJL201W	ECM25 SGDID:S000003737,Non-essential protein of unknown function; promoter contains a consensus binding sequence for factor Abf1p, Chr X from 54379-56178, Verified ORF
YMR083W	14.627	1.00	10	955.7617	1	YMR083W	ADH3 SGDID:S000004688,Mitochondrial alcohol dehydrogenase isozyme III; involved in the shuttling of mitochondrial NADH to the cytosol under anaerobic conditions and ethanol production, Chr XIII from 434787-435914, Verified ORF
YGR086C	12.38	1.00	72	8130.4908	1	YGR086C	PIL1 SGDID:S000003318,Integral membrane protein that along with Lsp1p is a primary component of eisosomes, large immobile patch structures at the cell cortex associated with endocytosis; null mutants show activation of Pkc1p\Ypk1p stress resistance pathways, Chr VII from 650621-649602, reverse complement, Verified ORF
YMR098C	31.21	0.78	2	69.8772	1	YMR098C	YMR098C SGDID:S000004704,Hypothetical protein, Chr XIII from 462608-460770, reverse complement, Uncharacterized ORF
YHR205W	18.48	0.99	3	224.6774	1	YHR205W	SCH9 SGDID:S000001248,Protein kinase that regulates signal transduction activity and G1 progression, controls cAPK activity, required for nitrogen activation of the FGM pathway, involved in life span regulation, homologous to mammalian Akt\PKB, Chr VIII from 509363-511837, Verified ORF
YNL262W	88.8360000000001	1.00	10	157.3678	1	YNL262W	POL2 SGDID:S000005206,Catalytic subunit of DNA polymerase epsilon, one of the major chromosomal DNA replication polymerases characterized by processivity and proofreading exonuclease activity; also involved in DNA synthesis during DNA repair, Chr XIV from 148213-154881, Verified ORF
YCR069W	15.19	0.88	2	161.9794	1	YCR069W	CPR4 SGDID:S000000665,Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway, Chr III from 239051-240007, Verified ORF
YGL106W	12.55	1.00	62	6906.4182	1	YGL106W	MLC1 SGDID:S000003074,Essential light chain for myosin Myo2p; may stabilize Myo2p by binding to the neck region; may interact with Myo1p, Iqg1p, and Myo2p to coordinate formation and contraction of the actomyosin ring with targeted membrane deposition, Chr VII from 306563-307012, Verified ORF
YGR281W	61.627	0.99	16	359.3263	1	YGR281W	YOR1 SGDID:S000003513,Plasma membrane transporter of the ATP-binding cassette (ABC) family, mediates export of many different organic anions including oligomycin, Chr VII from 1052830-1057263, Verified ORF
YPL245W	21.468	0.99	2	128.9372	1	YPL245W	YPL245W SGDID:S000006166,Hypothetical protein, Chr XVI from 85586-86950, Uncharacterized ORF
YGR118W	4.906	1.00	55	15672.5642	2	YPR132W,YGR118W	RPS23A SGDID:S000003350,Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accuracy; nearly identical to Rps23Bp and similar to E. coli S12 and rat S23 ribosomal proteins; deletion of both RPS23A and RPS23B is lethal, Chr VII from 726978-727042,727363-727735, Verified ORF
YPR104C	41.5	1.00	18	606.3582	1	YPR104C	FHL1 SGDID:S000006308,Putative transcriptional regulator with similarity to DNA-binding domain of Drosophila forkhead; required for rRNA processing, Chr XVI from 736431-733621, reverse complement, Verified ORF
YDR369C	38.61	1.00	7	253.4563	1	YDR369C	XRS2 SGDID:S000002777,Protein required for DNA repair; component of the Mre11 complex, which is involved in double strand breaks, meiotic recombination, telomere maintenance, and checkpoint signaling, Chr IV from 1217572-1215008, reverse complement, Verified ORF
YLR241W	21.569	0.99	3	192.5002	1	YLR241W	YLR241W SGDID:S000004231,Hypothetical protein, Chr XII from 620475-622823, Uncharacterized ORF
YOR069W	32.01	0.87	5	189.9802	1	YOR069W	VPS5 SGDID:S000005595,Nexin-1 homolog required for localizing membrane proteins from a prevacuolar\late endosomal compartment back to the late Golgi apparatus; structural component of the retromer membrane coat complex; forms a retromer subcomplex with Vps17p, Chr XV from 453770-455797, Verified ORF
YKL182W	78.876	1.00	462	8188.4558	1	YKL182W	FAS1 SGDID:S000001665,Beta subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains acetyltransacylase, dehydratase, enoyl reductase, malonyl transacylase, and palmitoyl transacylase activities, Chr XI from 100676-106831, Verified ORF
YDL065C	21.53	1.00	3	194.7969	1	YDL065C	PEX19 SGDID:S000002223,Chaperone and import receptor for newly-synthesized class I peroxisomal membrane proteins (PMPs), binds PMPs in the cytoplasm and delivers them to the peroxisome for subsequent insertion into the peroxisomal membrane, Chr IV from 337277-336249, reverse complement, Verified ORF
YIR006C	39.56	1.00	12	424.0625	1	YIR006C	PAN1 SGDID:S000001445,Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on the cell cortex; promotes protein-protein interactions essential for endocytosis; previously thought to be a subunit of poly(A) ribonuclease, Chr IX from 369905-365463, reverse complement, Verified ORF
YOR119C	18.466	0.85	2	128.7007	1	YOR119C	RIO1 SGDID:S000005645,Essential serine kinase involved in cell cycle progression and processing of the 20S pre-rRNA into mature 18S rRNA, Chr XV from 550247-548793, reverse complement, Verified ORF
YER090W	23.09	1.00	55	3329.9956	1	YER090W	TRP2 SGDID:S000000892,Anthranilate synthase, catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p, Chr V from 337945-339468, Verified ORF
YIR018W	10.26	0.97	6	793.0134	1	YIR018W	YAP5 SGDID:S000001457,Basic leucine zipper (bZIP) transcription factor, Chr IX from 384606-385343, Verified ORF
YDR292C	32.288	1.00	3	129.8927	1	YDR292C	SRP101 SGDID:S000002700,Signal recognition particle (SRP) receptor - alpha subunit; contain GTPase domains; involved in SRP-dependent protein targeting; interacts with SRP102p, Chr IV from 1045007-1043142, reverse complement, Verified ORF
YOL127W	7.67	1.00	145	26428.8064	1	YOL127W	RPL25 SGDID:S000005487,Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarity to E. coli L23 and rat L23a ribosomal proteins; binds to 26S rRNA via a conserved C-terminal motif, Chr XV from 80348-80360,80775-81190, Verified ORF
YFL027C	18.11	0.67	3	155.1609	1	YFL027C	GYP8 SGDID:S000001867,GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport, Chr VI from 81910-80417, reverse complement, Verified ORF
YLR380W	17.31	1.00	9	726.8593	1	YLR380W	CSR1 SGDID:S000004372,Phosphatidylinositol transfer protein with a potential role in lipid turnover; interacts specifically with thioredoxin peroxidase (Tsa2p) and may have a role in oxidative stress resistance, Chr XII from 878282-879508, Verified ORF
YOR124C	51.499	0.93	6	151.4747	1	YOR124C	UBP2 SGDID:S000005650,Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins, cleaves at the C terminus of ubiquitin fusions; capable of cleaving polyubiquitin and possesses isopeptidase activity, Chr XV from 558643-554825, reverse complement, Verified ORF
YOR257W	9.843	1.00	2	284.0582	1	YOR257W	CDC31 SGDID:S000005783,Component of the spindle pole body (SPB) half-bridge, required for SPB duplication in mitosis and meiosis II; homolog of mammalian centrin; interacts with Kar1p, Chr XV from 811008-811493, Verified ORF
YJR045C	29.69	1.00	289	13607.9453	1	YJR045C	SSC1 SGDID:S000003806,Mitochondrial matrix ATPase that is a subunit of the presequence translocase-associated protein import motor (PAM); involved in protein translocation into the matrix and protein folding; member of the heat shock protein 70 (HSP70) family, Chr X from 521517-519553, reverse complement, Verified ORF
YGR169C-A	4.28	0.78	6	1528.6462	1	YGR169C-A	YGR169C-A SGDID:S000028521,Putative protein of unknown function, Chr VII from 836670-836392, reverse complement, Uncharacterized ORF
YBL023C	46.369	1.00	10	301.4929	1	YBL023C	MCM2 SGDID:S000000119,Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex, Chr II from 177529-174923, reverse complement, Verified ORF
YHR163W	14.219	1.00	13	1278.1423	1	YHR163W	SOL3 SGDID:S000001206,6-phosphogluconolactonase, catalyzes the second step of the pentose phosphate pathway; weak multicopy suppressor of los1-1 mutation; homologous to Sol2p and Sol1p, Chr VIII from 423726-424475, Verified ORF
YEL009C-A	5.19	0.86	2	463.3039	1	YEL009C-A	YEL009C-A SGDID:S000028741,Questionable ORF from MIPS, Chr V from 136778-136371, reverse complement, Dubious ORF
YDL236W	16.78	1.00	20	1666.2607	1	YDL236W	PHO13 SGDID:S000002395,Alkaline phosphatase specific for p-nitrophenyl phosphate, involved in dephosphorylation of histone II-A and casein, Chr IV from 32296-33234, Verified ORF
YDR127W	67.736	1.00	52	1073.2198	1	YDR127W	ARO1 SGDID:S000002534,Pentafunctional arom protein, catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids, Chr IV from 704481-709247, Verified ORF
YJL042W	55.596	0.96	7	168.9781	1	YJL042W	MHP1 SGDID:S000003578,Microtubule-associated protein involved in assembly and stabilization of microtubules; overproduction results in cell cycle arrest at G2 phase; similar to Drosophila protein MAP and to mammalian MAP4 proteins, Chr X from 361166-365362, Verified ORF
YIL052C	2.15	1.00	15	9753.4376	1	YIL052C	RPL34B SGDID:S000001314,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein, Chr IX from 257061-257025,256552-256224, reverse complement, Verified ORF
YPR075C	10.76	0.73	9	853.607	1	YPR075C	OPY2 SGDID:S000006279,Protein of unknown function, overproduction blocks cell cycle arrest in the presence of mating pheromone, Chr XVI from 696816-695734, reverse complement, Verified ORF
YDR444W	30.17	0.96	1	44.4836	1	YDR444W	YDR444W SGDID:S000002852,Hypothetical protein, Chr IV from 1350282-1352345, Uncharacterized ORF
YOL017W	18.07	0.92	2	142.3523	1	YOL017W	ESC8 SGDID:S000005377,Protein involved in telomeric and mating-type locus silencing, interacts with Sir2p and also interacts with the Gal11p, which is a component of the RNA pol II mediator complex, Chr XV from 292530-294674, Verified ORF
YNL059C	30.16	0.99	5	229.445	1	YNL059C	ARP5 SGDID:S000005004,Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes, Chr XIV from 514936-512669, reverse complement, Verified ORF
YLR033W	25.768	1.00	6	325.5183	1	YLR033W	RSC58 SGDID:S000004023,Remodels the structure of chromatin complex 58KDa subunit; Chromatin Remodeling Complex subunit, Chr XII from 208762-210270, Verified ORF
YJR033C	61.03	0.99	10	226.7758	1	YJR033C	RAV1 SGDID:S000003794,Subunit of the RAVE complex (Rav1p, Rav2p, Skp1p), which promotes assembly of the V-ATPase holoenzyme; required for transport between the early and late endosome\PVC and for localization of TGN membrane proteins; potential Cdc28p substrate, Chr X from 496366-492293, reverse complement, Verified ORF
YMR253C	7.46	0.92	1	172.4066	1	YMR253C	YMR253C SGDID:S000004866,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern, Chr XIII from 777189-775945, reverse complement, Uncharacterized ORF
YNL175C	23.6	1.00	4	236.9479	1	YNL175C	NOP13 SGDID:S000005119,Protein of unknown function, localizes to the nucleolus and nucleoplasm; contains an RNA recognition motif (RRM) and has similarity to Nop12p, which is required for processing of pre-18S rRNA, Chr XIV from 308614-307403, reverse complement, Verified ORF
YMR303C	11.12	1.00	310	38972.8188	1	YMR303C	ADH2 SGDID:S000004918,Glucose-repressible alcohol dehydrogenase II, catalyzes the conversion of ethanol to acetaldehyde; involved in the production of certain carboxylate esters; regulated by ADR1, Chr XIII from 874336-873290, reverse complement, Verified ORF
YER012W	7.46	1.00	5	936.9924	1	YER012W	PRE1 SGDID:S000000814,20S proteasome beta-type subunit; localizes to the nucleus throughout the cell cycle, Chr V from 177834-178430, Verified ORF
YOL030W	11.28	1.00	9	1115.4197	1	YOL030W	GAS5 SGDID:S000005390,Putative 1,3-beta-glucanosyltransferase, has similarity to Gas1p; localizes to the cell wall, Chr XV from 268188-269642, Verified ORF
YBL098W	17.57	0.79	5	314.2897	1	YBL098W	BNA4 SGDID:S000000194,Kynurenine 3-mono oxygenase, required for biosynthesis of nicotinic acid from tryptophan via kynurenine pathway, Chr II from 39142-40524, Verified ORF
YJR009C	11.58	1.00	747	90181.3962	1	YJR009C	TDH2 SGDID:S000003769,Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall , Chr X from 454596-453598, reverse complement, Verified ORF
YIL041W	13.05	1.00	80	8570.0703	1	YIL041W	GVP36 SGDID:S000001303,Golgi vesicle protein of unknown function; localizes to both early and late Golgi vesicles, Chr IX from 276524-277504, Uncharacterized ORF
YDL130W	2.6	0.99	82	43649.6345	1	YDL130W	RPP1B SGDID:S000002288,Ribosomal protein P1 beta, component of the ribosomal stalk, which is involved in interaction of translational elongation factors with ribosome; accumulation is regulated by phosphorylation and interaction with the P2 stalk component, Chr IV from 229906-230019,230321-230527, Verified ORF
YLR301W	12	1.00	21	2446.4872	1	YLR301W	YLR301W SGDID:S000004292,Hypothetical protein, Chr XII from 730827-731561, Uncharacterized ORF
YIL030C	35.96	0.99	5	192.4378	1	YIL030C	SSM4 SGDID:S000001292,Ubiquitin-protein ligase of the ER\nuclear envelope, required for degradation of Alpha2p and other proteins containing a Deg1 degradation signal; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation, Chr IX from 300008-296049, reverse complement, Verified ORF
YDL221W	3.6	0.67	3	780.5459	1	YDL221W	YDL221W SGDID:S000002380,Hypothetical protein; open reading frame overlaps 3' end of essential CDC13 gene encoding a telomere capping protein, Chr IV from 62012-62563, Dubious ORF
YGL041W-A	3.59	0.99	2	771.0377	1	YGL041W-A	YGL041W-A SGDID:S000028826,Identified by expression profiling and mass spectrometry, Chr VII from 419047-419295, Dubious ORF
YER069W	36.55	0.93	8	284.5708	1	YER069W	ARG5,Protein that is processed in the mitochondrion to yield acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase, which catalyze the 2nd and 3rd steps in arginine biosynthesis; enzymes form a complex with Arg2p,6 SGDID:S000000871, Chr V from 295408-297999, Verified ORF
YKL027W	22.348	0.94	3	176.4068	1	YKL027W	YKL027W SGDID:S000001510,Protein of unknown function, localized to the mitochondrial outer membrane, Chr XI from 387205-388548, Verified ORF
YOR343W-B	63.64	0.90	12	237.2457	1	YOR343W-B	YOR343W-B SGDID:S000007356,TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition, Chr XV from 970575-971868,971870-975888, transposable_element_gene
YCR053W	27.04	1.00	170	8789.1554	1	YCR053W	THR4 SGDID:S000000649,Threonine synthase, conserved protein that catalyzes formation of threonine from 0-phosphohomoserine; expression is regulated by the GCN4-mediated general amino acid control pathway, Chr III from 216693-218237, Verified ORF
YDR458C	33.819	0.99	33	1350.4959	1	YDR458C	YDR458C SGDID:S000002866,Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery, Chr IV from 1382038-1380047, reverse complement, Uncharacterized ORF
YPL202C	15.43	0.83	4	300.7994	1	YPL202C	AFT2 SGDID:S000006123,Iron-regulated transcriptional activator, required for iron homeostasis and resistance to oxidative stress; similar to Aft1p, Chr XVI from 169337-168087, reverse complement, Verified ORF
YDL001W	16.53	0.92	8	622.4577	1	YDL001W	RMD1 SGDID:S000002159,Cytoplasmic protein required for sporulation, Chr IV from 447981-449273, Verified ORF
YPR010C	41.39	1.00	53	1790.1332	1	YPR010C	RPA135 SGDID:S000006214,RNA polymerase I subunit A135, Chr XVI from 581193-577582, reverse complement, Verified ORF
YOR346W	51.529	0.99	8	214.8712	1	YOR346W	REV1 SGDID:S000005873,Deoxycytidyl transferase, forms a complex with the subunits of DNA polymerase zeta, Rev3p and Rev7p; involved in repair of abasic sites in damaged DNA, Chr XV from 981825-984782, Verified ORF
YOL145C	51.227	1.00	10	272.9015	1	YOL145C	CTR9 SGDID:S000005505,Component of the Paf1p complex, which is a large complex that binds to and modulates the activity of RNA polymerase II and is required for expression of a subset of genes, including cyclin genes; contains TPR repeats, Chr XV from 52787-49554, reverse complement, Verified ORF
YBR056W	22.58	1.00	10	619.1287	1	YBR056W	YBR056W SGDID:S000000260,Hypothetical protein, Chr II from 347877-349382, Uncharacterized ORF
YLR114C	30.49	0.98	9	404.4045	1	YLR114C	YLR114C SGDID:S000004104,Mutation is syntheticly lethal with apl2 vps1 double mutant, Chr XII from 377239-374945, reverse complement, Uncharacterized ORF
YJR072C	14.01	0.98	3	293.3689	1	YJR072C	NPA3 SGDID:S000003833,Cytoplasmic protein required for cell viability, identified by association with pre-ribosomal particles, Chr X from 572039-570882, reverse complement, Verified ORF
YOR279C	10.88	0.65	1	83.5197	1	YOR279C	RFM1 SGDID:S000005805,DNA-binding protein required for vegetative repression of middle sporulation genes; specificity factor that directs the Hst1p histone deacetylase to some of the promoters regulated by Sum1p; involved in telomere maintenance, Chr XV from 844629-843697, reverse complement, Verified ORF
YMR305C	9.77	0.97	2	277.5952	1	YMR305C	SCW10 SGDID:S000004921,Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on mutant phenotype and its regulation by Ste12p, Chr XIII from 880231-879062, reverse complement, Verified ORF
YKR065C	6.13	0.99	1	225.7769	1	YKR065C	PAM17 SGDID:S000001773,Presequence translocase-associated motor subunit, required for stable complex formation between cochaperones Pam16p and Pam18p, promotes association of Pam16p-Pam18p with the presequence translocase, Chr XI from 565534-564941, reverse complement, Verified ORF
YOR310C	27.937	1.00	160	8006.5446	1	YOR310C	NOP58 SGDID:S000005837,Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA, Chr XV from 898357-896822, reverse complement, Verified ORF
YOR294W	8.379	1.00	22	3670.5859	1	YOR294W	RRS1 SGDID:S000005820,Essential protein that binds ribosomal protein L11 and is required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis; mouse homolog shows altered expression in Huntington's disease model mice, Chr XV from 868339-868950, Verified ORF
YOR273C	16.35	0.85	2	145.357	1	YOR273C	TPO4 SGDID:S000005799,Polyamine transport protein, recognizes spermine, putrescine, and spermidine; localizes to the plasma membrane; member of the major facilitator superfamily, Chr XV from 836430-834451, reverse complement, Verified ORF
YLR248W	18.75	0.93	1	69.3404	1	YLR248W	RCK2 SGDID:S000004238,Protein kinase involved in the response to oxidative and osmotic stress; identified as suppressor of S. pombe cell cycle checkpoint mutations, Chr XII from 634254-636086, Verified ORF
YMR038C	7.76	1.00	14	2522.1518	1	YMR038C	CCS1 SGDID:S000004641,Copper chaperone for superoxide dismutase Sod1p, involved in oxidative stress protection; Met-X-Cys-X2-Cys motif within the N-terminal portion is involved in insertion of copper into Sod1p under conditions of copper deprivation, Chr XIII from 348259-347510, reverse complement, Verified ORF
YLR398C	62.77	0.69	2	30.7349	1	YLR398C	SKI2 SGDID:S000004390,Putative RNA helicase, involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs; forms complex with Ski3p and Ski8p; required for repressing propagation of dsRNA viruses, Chr XII from 919019-915156, reverse complement, Verified ORF
YEL022W	56.297	1.00	14	347.6543	1	YEL022W	GEA2 SGDID:S000000748,Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs), involved in vesicular transport between the Golgi and ER, Golgi organization, and actin cytoskeleton organization; similar to but not functionally redundant with Gea1p, Chr V from 111421-115800, Verified ORF
YLR309C	63.058	0.93	5	103.0902	1	YLR309C	IMH1 SGDID:S000004300,Protein involved in vesicular transport, mediates transport between an endosomal compartment and the Golgi, contains a Golgi-localization (GRIP) domain that interacts with activated Arl1p-GTP to localize Imh1p to the Golgi, Chr XII from 751771-749036, reverse complement, Verified ORF
YGL012W	10.62	1.00	11	1448.015	1	YGL012W	ERG4 SGDID:S000002980,C-24(28) sterol reductase, catalyzes the final step in ergosterol biosynthesis; mutants are viable, but lack ergosterol, Chr VII from 472860-474281, Verified ORF
YER023W	6.02	1.00	5	1161.1235	1	YER023W	PRO3 SGDID:S000000825,Delta 1-pyrroline-5-carboxylate reductase, catalyzes the last step in proline biosynthesis, Chr V from 201075-201935, Verified ORF
YFR044C	24.22	1.00	169	9754.7799	1	YFR044C	YFR044C SGDID:S000001940,Putative protein of unknown function; gene expression regulated by Abf1p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and mitochondrion; YFR044C is not an essential gene, Chr VI from 241424-239979, reverse complement, Uncharacterized ORF
YML024W	7.69	1.00	222	40358.1776	2	YML024W,YDR447C	RPS17A SGDID:S000004486,Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Bp and has similarity to rat S17 ribosomal protein, Chr XIII from 225889-225891,226290-226697, Verified ORF
YIL129C	96.54	1.00	7	101.3667	1	YIL129C	TAO3 SGDID:S000001391,Protein involved in cell morphogenesis and proliferation, associated with protein kinase Cbk1p; mutants activate OCH1 transcription, Chr IX from 113237-106107, reverse complement, Verified ORF
YHR194W	17.12	0.98	9	720.2275	1	YHR194W	MDM31 SGDID:S000001237,Mitochondrial inner membrane protein with similarity to Mdm32p, required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MDM10, MDM12, and MDM34, Chr VIII from 488657-490396, Verified ORF
YJL055W	11.15	1.00	7	877.6635	1	YJL055W	YJL055W SGDID:S000003591,Putative protein of unknown function; deletion mutants are sensitive to purine base analogs, 6-hydroxylaminopurine (HAP) and 2-amino-6-hydroxylaminopurine (AHA) and are AHA-hypermutable, Chr X from 333274-334011, Uncharacterized ORF
YGL027C	35.91	1.00	17	661.8177	1	YGL027C	CWH41 SGDID:S000002995,Processing alpha glucosidase I, ER type II integral membrane N-glycoprotein involved in assembly of cell wall beta 1,6 glucan and asparagine-linked protein glycosylation; also involved in ER protein quality control and sensing of ER stress, Chr VII from 446148-443647, reverse complement, Verified ORF
YML028W	11.72	1.00	282	33637.709	1	YML028W	TSA1 SGDID:S000004490,Ubiquitous housekeeping thioredoxin peroxidase, reduces reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; mediates redox regulation of the nuclear localization of Yap1p; deletion results in mutator phenotype, Chr XIII from 220138-220728, Verified ORF
YJL136C	6.638	1.00	89	18743.8012	1	YJL136C	RPS21B SGDID:S000003672,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein, Chr X from 157192-157169,156708-156469, reverse complement, Verified ORF
YLR423C	28.949	1.00	4	193.1662	1	YLR423C	ATG17 SGDID:S000004415,Protein that interacts with and is required for activation of Apg1p protein kinase; involved in autophagy but not in the Cvt (cytoplasm to vacuole targeting) pathway, Chr XII from 973167-971914, reverse complement, Verified ORF
YBL076C	58.549	1.00	271	6470.7514	1	YBL076C	ILS1 SGDID:S000000172,Cytoplasmic isoleucine-tRNA synthetase, target of the G1-specific inhibitor reveromycin A, Chr II from 84259-81041, reverse complement, Verified ORF
YDR245W	16.44	0.68	2	115.649	1	YDR245W	MNN10 SGDID:S000002653,Subunit of a Golgi mannosyltransferase complex also containing Anp1p, Mnn9p, Mnn11p, and Hoc1p that mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family, Chr IV from 952796-953977, Verified ORF
YDR212W	26.12	1.00	40	2140.877	1	YDR212W	TCP1 SGDID:S000002620,Alpha subunit of chaperonin-containing T-complex, which mediates protein folding in the cytosol; involved in maintenance of actin cytoskeleton; homolog to Drosophila melanogaster and mouse tailless complex polypeptide, Chr IV from 887229-888908, Verified ORF
YKR025W	14.39	0.91	6	530.4406	1	YKR025W	RPC37 SGDID:S000001733,RNA polymerase III subunit C37, Chr XI from 487413-488261, Verified ORF
YOR103C	3.4	0.99	7	2849.4381	1	YOR103C	OST2 SGDID:S000005629,Epsilon subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-linked glycosylation of newly synthesized proteins, Chr XV from 516842-516450, reverse complement, Verified ORF
YBR031W	10.64	1.00	522	68585.7334	1	YBR031W	RPL4A SGDID:S000000235,N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins, Chr II from 300166-301254, Verified ORF
YBR225W	35.156	0.99	3	118.1032	1	YBR225W	YBR225W SGDID:S000000429,Hypothetical protein, Chr II from 670622-673324, Uncharacterized ORF
YOR254C	28.481	1.00	39	1914.3188	1	YOR254C	SEC63 SGDID:S000005780,Essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p\BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER, Chr XV from 807024-805033, reverse complement, Verified ORF
YHR174W	28.489	1.00	2330	114336.1668	1	YHR174W	ENO2 SGDID:S000001217,Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose, Chr VIII from 451327-452640, Verified ORF
YLR107W	15.44	0.98	23	2040.852	1	YLR107W	REX3 SGDID:S000004097,RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases, Chr XII from 364117-365331, Verified ORF
YKL020C	38.688	0.94	6	203.8016	1	YKL020C	SPT23 SGDID:S000001503,ER membrane protein involved, with its homolog Mga2p, in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin\proteasome-dependent processing followed by nuclear targeting, Chr XI from 401723-398475, reverse complement, Verified ORF
YLR441C	12.11	1.00	423	48831.6205	1	YLR441C	RPS1A SGDID:S000004433,Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarity to rat S3a ribosomal protein, Chr XII from 1018905-1018138, reverse complement, Verified ORF
YMR072W	8.44	1.00	23	3809.6958	1	YMR072W	ABF2 SGDID:S000004676,Mitochondrial DNA-binding protein involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation, Chr XIII from 411568-412119, Verified ORF
YER094C	5.94	1.00	35	8237.3308	1	YER094C	PUP3 SGDID:S000000896,Beta subunit of the 20S proteasome involved in ubiquitin-dependent catabolism; human homolog is subunit C10, Chr V from 349342-348725, reverse complement, Verified ORF
YGR145W	24.77	1.00	3	169.3168	1	YGR145W	ENP2 SGDID:S000003377,Essential nucleolar protein of unknown function; contains WD repeats, interacts with Mpp10p and Bfr2p, and has homology to Spb1p, Chr VII from 781772-783895, Uncharacterized ORF
YLR265C	11.13	0.85	6	640.5896	1	YLR265C	NEJ1 SGDID:S000004255,Protein involved in regulation of nonhomologous end joining; repressed by MAT heterozygosity; associates with Lif1p and regulates its cellular distribution, Chr XII from 675457-674429, reverse complement, Verified ORF
YBL005W	31.497	0.97	4	172.2136	1	YBL005W	PDR3 SGDID:S000000101,Transcriptional activator of the pleiotropic drug resistance network, regulates expression of ATP-binding cassette (ABC) transporters through binding to cis-acting sites known as PDREs (PDR responsive elements), Chr II from 217473-220403, Verified ORF
YOL027C	27.819	1.00	4	201.0126	1	YOL027C	MDM38 SGDID:S000005387,Mitochondrial inner membrane protein, required for K+\H+ exchange and for normal mitochondrial morphology and inheritance; associates with mitochondrial ribosomes; human ortholog Letm1 is implicated in Wolf-Hirschhorn syndrome, Chr XV from 273725-272004, reverse complement, Verified ORF
YMR093W	18.32	1.00	10	763.0964	1	YMR093W	UTP15 SGDID:S000004699,Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA, Chr XIII from 454014-455555, Verified ORF
YIL016W	5.98	0.99	7	1620.0818	1	YIL016W	SNL1 SGDID:S000001278,Protein of unknown function proposed to be involved in nuclear pore complex biogenesis and maintenance as well as protein folding; has similarity to the mammalian BAG-1 protein, Chr IX from 321452-321931, Verified ORF
YOL143C	4.77	1.00	14	4103.1233	1	YOL143C	RIB4 SGDID:S000005503,Lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, also known as DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin, Chr XV from 55103-54594, reverse complement, Verified ORF
YER177W	13.36	1.00	183	19149.1518	1	YER177W	BMH1 SGDID:S000000979,14-3-3 protein, major isoform; binds proteins and DNA, involved in regulation of many processes including exocytosis and vesicle transport, Ras\MAPK signaling during pseudohyphal development, rapamycin-sensitive signaling, and others, Chr V from 545606-546409, Verified ORF
YAL029C	64.456	0.72	4	62.4646	1	YAL029C	MYO4 SGDID:S000000027,One of two type V myosins; required for mother-specific HO expression, for the bud tip localization of ASH1 and IST2 mRNA; facilitates growth and orientation of ER tubules along with She3p, Chr I from 92271-87856, reverse complement, Verified ORF
YIL108W	26.29	0.98	2	104.2246	1	YIL108W	YIL108W SGDID:S000001370,Putative metalloprotease, Chr IX from 160884-162974, Uncharacterized ORF
YER063W	9.25	0.96	2	290.1779	1	YER063W	THO1 SGDID:S000000865,Protein of unknown function; overproduction suppresses the transcriptional defect caused by an hpr1 mutation, Chr V from 281708-282364, Verified ORF
YGR233C	48.887	0.93	5	132.9733	1	YGR233C	PHO81 SGDID:S000003465,Cyclin-dependent kinase (CDK) inhibitor, regulates Pho80p-Pho85p and Pcl7p-Pho85p cyclin-CDK complexes in response to phosphate levels; required for derepression of PHO5; transcriptionally regulated by Pho4p and Pho2p, Chr VII from 958213-954677, reverse complement, Verified ORF
YDR404C	7.2	0.80	2	310.665	1	YDR404C	RPB7 SGDID:S000002812,RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p, Chr IV from 1277161-1276646, reverse complement, Verified ORF
YOR058C	41.769	0.84	1	28.1144	1	YOR058C	ASE1 SGDID:S000005584,Member of a family of microtubule-associated proteins (MAPs) that function at the mitotic spindle midzone; required for spindle elongation; undergoes cell cycle-regulated degradation by anaphase promoting complex; potential Cdc28p substrate, Chr XV from 436347-433690, reverse complement, Verified ORF
YNL049C	32.379	0.93	6	240.9215	1	YNL049C	SFB2 SGDID:S000004994,Probable component of COPII coated vesicles that binds to Sec23p; similar to and functionally redundant with Sec24p, but expressed at low levels; involved in ER to Golgi transport and in autophagy, Chr XIV from 537912-535282, reverse complement, Verified ORF
YER019W	13.738	0.99	4	402.9735	1	YER019W	ISC1 SGDID:S000000821,Inositol phosphosphingolipid phospholipase C, hydrolyzes inositolphosphosphingolipids, activated by phosphatidylserine, cardiolipin, and phosphatidylglycerol, mediates Na+ and Li+ halotolerance, contains a P loop-like domain, Chr V from 192796-194229, Verified ORF
YGR166W	24.41	0.90	38	1958.6788	1	YGR166W	KRE11 SGDID:S000003398,Protein involved in biosynthesis of cell wall beta-glucans; subunit of the TRAPP (transport protein particle) complex, which is involved in the late steps of endoplasmic reticulum to Golgi transport, Chr VII from 830520-832202, Verified ORF
YMR302C	43.407	1.00	15	483.0992	1	YMR302C	YME2 SGDID:S000004917,Integral inner mitochondrial membrane protein with similarity to exonucleases; mutants exhibit an increased rate of mitochondrial DNA escape, Chr XIII from 872624-870072, reverse complement, Verified ORF
YBL104C	35.99	0.98	4	152.2681	1	YBL104C	YBL104C SGDID:S000000200,Hypothetical protein, Chr II from 21293-18177, reverse complement, Uncharacterized ORF
YDL073W	39.888	1.00	15	525.7192	1	YDL073W	YDL073W SGDID:S000002231,Hypothetical protein, Chr IV from 326613-329567, Uncharacterized ORF
YNL108C	10.228	0.99	2	270.6321	1	YNL108C	YNL108C SGDID:S000005052,Hypothetical protein, Chr XIV from 419828-419016, reverse complement, Uncharacterized ORF
YEL042W	17.6	0.99	5	393.1854	1	YEL042W	GDA1 SGDID:S000000768,Guanosine diphosphatase located in the Golgi, involved in the transport of GDP-mannose into the Golgi lumen by converting GDP to GMP after mannose is transferred its substrate, Chr V from 73771-75327, Verified ORF
YBR084W	44.481	1.00	37	1162.8724	1	YBR084W	MIS1 SGDID:S000000288,Mitochondrial C1-tetrahydrofolate synthase, involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase, Chr II from 411048-413975, Verified ORF
YKL085W	20.42	1.00	77	5271.569	1	YKL085W	MDH1 SGDID:S000001568,Mitochondrial malate dehydrogenase, catalyzes interconversion of malate and oxaloacetate; involved in the tricarboxylic acid (TCA) cycle, Chr XI from 278767-279771, Verified ORF
YMR173W	11.88	0.91	3	321.2559	1	YMR173W	DDR48 SGDID:S000004784,DNA damage-responsive protein, expression is increased in response to heat-shock stress or treatments that produce DNA lesions; contains multiple repeats of the amino acid sequence NNNDSYGS, Chr XIII from 608688-609980, Verified ORF
YKL203C	92.337	1.00	51	772.1458	1	YKL203C	TOR2 SGDID:S000001686,PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that regulates growth in response to nutrients and TORC2, a complex that regulates cell-cycle dependent polarization of the actin cytoskeleton; involved in meiosis, Chr XI from 63360-55936, reverse complement, Verified ORF
YHR052W	17.71	1.00	27	2131.3271	1	YHR052W	CIC1 SGDID:S000001094,Essential protein that interacts with proteasome components and has a potential role in proteasome substrate specificity; also copurifies with 66S pre-ribosomal particles, Chr VIII from 210842-211972, Verified ORF
YKL221W	4.03	0.76	1	263.6413	1	YKL221W	MCH2 SGDID:S000001704,Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of monocarboxylic acids across the plasma membrane; mutant is not deficient in monocarboxylate transport, Chr XI from 6108-7529, Verified ORF
YNL138W	19.988	1.00	53	3706.9048	1	YNL138W	SRV2 SGDID:S000005082,CAP (cyclase-associated protein) subunit of adenylyl cyclase complex; N-terminus binds adenylyl cyclase and facilitates activation by RAS; C-terminus binds ADP-actin monomers, facilitating regulation of actin dynamics and cell morphogenesis, Chr XIV from 366743-368323, Verified ORF
YGL173C	69.246	1.00	50	1009.4393	1	YGL173C	KEM1 SGDID:S000003141,Evolutionarily-conserved 5'-3' exonuclease component of cytoplasmic processing (P) bodies involved in mRNA decay; plays a role in microtubule-mediated processes, filamentous growth, ribosomal RNA maturation, and telomere maintenance, Chr VII from 180119-175533, reverse complement, Verified ORF
YLR311C	3.19	0.89	2	780.0711	1	YLR311C	YLR311C SGDID:S000004302,Hypothetical protein, Chr XII from 757614-757267, reverse complement, Dubious ORF
YLR355C	25.808	1.00	664	35968.1948	1	YLR355C	ILV5 SGDID:S000004347,Acetohydroxyacid reductoisomerase, mitochondrial protein involved in branched-chain amino acid biosynthesis, also required for maintenance of wild-type mitochondrial DNA, Chr XII from 839252-838065, reverse complement, Verified ORF
YLR285W	4.118	0.88	4	1194.9816	1	YLR285W	NNT1 SGDID:S000004275,Putative nicotinamide N-methyltransferase, has a role in rDNA silencing and in lifespan determination, Chr XII from 707362-708147, Verified ORF
YLR039C	37.82	0.72	19	505.6726	1	YLR039C	RIC1 SGDID:S000004029,Protein involved in retrograde transport to the cis-Golgi network; forms heterodimer with Rgp1p that acts as a GTP exchange factor for Ypt6p; involved in transcription of rRNA and ribosomal protein genes, Chr XII from 228597-225427, reverse complement, Verified ORF
YHL011C	17.4	1.00	11	883.7885	1	YHL011C	PRS3 SGDID:S000001003,5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of a five related enzymes, which are active as heteromultimeric complexes, Chr VIII from 81612-80650, reverse complement, Verified ORF
YDR168W	29.71	1.00	18	846.9831	1	YDR168W	CDC37 SGDID:S000002575,Essential Hsp90p co-chaperone; necessary for passage through the START phase of the cell cycle, Chr IV from 790325-791845, Verified ORF
YLR113W	15.25	1.00	14	1283.4031	1	YLR113W	HOG1 SGDID:S000004103,Mitogen-activated protein kinase involved in osmoregulation via three independent osmosensors; mediates the recruitment and activation of RNA Pol II at Hot1p-dependent promoters; localization regulated by Ptp2p and Ptp3p, Chr XII from 371621-372928, Verified ORF
YNL308C	30.63	1.00	6	273.8477	1	YNL308C	KRI1 SGDID:S000005252,Essential nucleolar protein required for 40S ribosome biogenesis; physically and functionally interacts with Krr1p, Chr XIV from 55896-54121, reverse complement, Verified ORF
YIL149C	93.97	0.95	6	84.7989	1	YIL149C	MLP2 SGDID:S000001411,Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved in the Tel1p pathway that controls telomere length, Chr IX from 68067-63028, reverse complement, Verified ORF
YDR397C	4.91	0.99	2	563.7526	1	YDR397C	NCB2 SGDID:S000002805,Beta subunit of the NC2 dimeric histone-fold complex; represses RNA polymerase II transcription through binding to TBP and inhibition of TFIIA and TFIIB; homologous to the Dr1 subunit of the mammalian NC2 (negative cofactor2), Chr IV from 1266890-1266854,1266761-1266358, reverse complement, Verified ORF
YOR171C	31.582	0.97	7	300.5626	1	YOR171C	LCB4 SGDID:S000005697,Sphingoid long-chain base kinase, responsible for synthesis of long-chain base phosphates, which function as signaling molecules, regulates synthesis of ceramide from exogenous long-chain bases, localizes to the Golgi and late endosomes, Chr XV from 653885-652011, reverse complement, Verified ORF
YER088W-B	0.88	0.99	7	11009.1927	1	YER088W-B	YER088W-B SGDID:S000028623,Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching, Chr V from 335923-336069, Dubious ORF
YLR043C	8.23	1.00	84	14268.6985	1	YLR043C	TRX1 SGDID:S000004033,Cytoplasmic thioredoxin isoenzyme of the thioredoxin system which protects cells against both oxidative and reductive stress, forms LMA1 complex with Pbi2p, acts as a cofactor for Tsa1p, required for ER-Golgi transport and vacuole inheritance, Chr XII from 232014-231703, reverse complement, Verified ORF
YHR210C	12.419	0.93	5	523.4452	1	YHR210C	YHR210C SGDID:S000001253,Hypothetical protein, Chr VIII from 521737-520712, reverse complement, Uncharacterized ORF
YCR032W	74.096	0.65	4	49.055	1	YCR032W	BPH1 SGDID:S000000628,Protein homologous to human Chediak-Higashi syndrome protein and murine beige gene, which are implicated in disease syndromes due to defective lysosomal trafficking, Chr III from 179516-186019, Verified ORF
YBL099W	26.373	1.00	104	5512.8822	1	YBL099W	ATP1 SGDID:S000000195,Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis, Chr II from 37050-38687, Verified ORF
YGR218W	40.04	1.00	23	803.0427	1	YGR218W	CRM1 SGDID:S000003450,Major karyopherin, involved in export of proteins, RNAs, and ribosomal subunits from the nucleus, Chr VII from 932544-935798, Verified ORF
YFL007W	76.94	0.92	5	83.5815	1	YFL007W	BLM10 SGDID:S000001887,Proteosome activator subunit; found in association with core particles, with and without the 19S regulatory particle; required for resistance to bleomycin, may be involved in protecting against oxidative damage; similar to mammalian PA200, Chr VI from 123474-129905, Verified ORF
YDR180W	68.487	0.99	12	242.5008	1	YDR180W	SCC2 SGDID:S000002588,Putative protein kinase and subunit of cohesin loading factor (Scc2p-Scc4p), a complex required for the loading of cohesin complexes onto chromosomes; involved in establishing sister chromatid cohesion during DSB repair via histone H2AX, Chr IV from 821292-825773, Verified ORF
YPR185W	27.84	1.00	14	703.0135	1	YPR185W	ATG13 SGDID:S000006389,Phosphorylated protein that interacts with Vac8p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway and autophagy, Chr XVI from 907214-909430, Verified ORF
YJR091C	26.46	0.90	2	95.1015	1	YJR091C	JSN1 SGDID:S000003851,Member of the Puf family of RNA-binding proteins, interacts with mRNAs encoding membrane-associated proteins; overexpression suppresses a tub2-150 mutation and causes increased sensitivity to benomyl in wild-type cells, Chr X from 598251-594976, reverse complement, Verified ORF
YLR359W	25.79	1.00	71	3848.681	1	YLR359W	ADE13 SGDID:S000004351,Adenylosuccinate lyase, catalyzes two steps in the 'de novo' purine nucleotide biosynthetic pathway, Chr XII from 844281-845729, Verified ORF
YPL217C	53.239	1.00	10	262.588	1	YPL217C	BMS1 SGDID:S000006138,Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits and for processing of the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, has similarity to Tsr1p, Chr XVI from 143170-139619, reverse complement, Verified ORF
YLR244C	12.3	1.00	18	2045.843	1	YLR244C	MAP1 SGDID:S000004234,Methionine aminopeptidase, catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p, Chr XII from 626333-625170, reverse complement, Verified ORF
YMR236W	7.97	0.99	3	520.9583	1	YMR236W	TAF9 SGDID:S000004849,Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3, Chr XIII from 742970-743443, Verified ORF
YOR234C	6.01	1.00	71	16515.3883	1	YOR234C	RPL33B SGDID:S000005760,Ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Ap and has similarity to rat L35a; rpl33b null mutant exhibits normal growth while rpl33a rpl33b double null mutant is inviable, Chr XV from 779406-779388,778860-778556, reverse complement, Verified ORF
YIL169C	13.417	0.93	2	193.8038	1	YIL169C	YIL169C SGDID:S000001431,Putative protein of unknown function; serine\threonine rich and highly similar to YOL155C, a putative glucan alpha-1,4-glucosidase; transcript is induced in both high and low pH environments; YIL169C is a non-essential gene, Chr IX from 26106-23119, reverse complement, Uncharacterized ORF
YDR465C	18.4	0.92	1	69.8996	1	YDR465C	RMT2 SGDID:S000002873,Arginine methyltransferase; ribosomal protein L12 is a substrate, Chr IV from 1394566-1393328, reverse complement, Verified ORF
YCL030C	34.027	1.00	116	4765.8376	1	YCL030C	HIS4 SGDID:S000000535,Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase, phosphoribosyl-AMP cyclohydrolase, and histidinol dehydrogenase activities; catalyzes the second, third, ninth and tenth steps in histidine biosynthesis, Chr III from 68333-65934, reverse complement, Verified ORF
YDR044W	13.36	0.99	6	621.5626	1	YDR044W	HEM13 SGDID:S000002451,Coproporphyrinogen III oxidase, an oxygen requiring enzyme that catalyzes the sixth step in the heme biosynthetic pathway; localizes to the mitochondrial inner membrane; transcription is repressed by oxygen and heme (via Rox1p and Hap1p), Chr IV from 546640-547626, Verified ORF
YIR001C	9.64	0.81	3	352.3985	1	YIR001C	SGN1 SGDID:S000001440,Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation, Chr IX from 356892-356140, reverse complement, Verified ORF
YLR118C	7.07	0.99	3	587.2755	1	YLR118C	YLR118C SGDID:S000004108,Acyl-protein thioesterase responsible for depalmitoylation of Gpa1p; the mutant has no gross defects in signaling through the mating pathway; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus, Chr XII from 385409-384726, reverse complement, Verified ORF
YDR321W	11.92	1.00	19	2228.3441	1	YDR321W	ASP1 SGDID:S000002729,Cytosolic L-asparaginase, involved in asparagine catabolism, Chr IV from 1108699-1109844, Verified ORF
YKR057W	6.688	1.00	86	17976.5811	1	YKR057W	RPS21A SGDID:S000001765,Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein, Chr XI from 551299-551322,551645-551884, Verified ORF
YAR073W	14.79	1.00	2	189.0456	1	YAR073W	IMD1 SGDID:S000000095,Nonfunctional protein with homology to IMP dehydrogenase; probable pseudogene, located close to the telomere; is not expressed at detectable levels; YAR073W and YAR075W comprise a continuous reading frame in some strains of S. cerevisiae, Chr I from 227733-228944, Dubious ORF
YDR387C	11.009	0.83	1	105.3986	1	YDR387C	YDR387C SGDID:S000002795,Hypothetical protein, Chr IV from 1249813-1248146, reverse complement, Uncharacterized ORF
YOL130W	27.08	1.00	12	619.4945	1	YOL130W	ALR1 SGDID:S000005490,Plasma membrane Mg(2+) transporter, expression and turnover are regulated by Mg(2+) concentration; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions, Chr XV from 74400-76979, Verified ORF
YFL037W	13.35	1.00	119	12461.5082	1	YFL037W	TUB2 SGDID:S000001857,Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules, Chr VI from 56335-57708, Verified ORF
YER178W	19.24	1.00	74	5376.8951	1	YER178W	PDA1 SGDID:S000000980,E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex, catalyzes the direct oxidative decarboxylation of pyruvate to acetyl-CoA, regulated by glucose, Chr V from 546812-548074, Verified ORF
YDL031W	49.24	1.00	8	227.1312	1	YDL031W	DBP10 SGDID:S000002189,Putative ATP-dependent RNA helicase of the DEAD-box protein family, constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis, Chr IV from 394214-397201, Verified ORF
YER105C	57.927	1.00	5	120.6684	1	YER105C	NUP157 SGDID:S000000907,Abundant subunit of the nuclear pore complex (NPC), present on both sides of the NPC, has similarity to Nup170p, Chr V from 372009-367834, reverse complement, Verified ORF
YIL055C	20.15	0.71	1	49.2592	1	YIL055C	YIL055C SGDID:S000001317,Hypothetical protein, Chr IX from 253923-252040, reverse complement, Uncharacterized ORF
YLR246W	8.69	0.67	4	431.1416	1	YLR246W	ERF2 SGDID:S000004236,Subunit of a palmitoyltransferase, composed of Erf2p and Shr5p, that adds a palmitoyl lipid moiety to Ras2p through a thioester linkage; mutants partially mislocalize Ras2p to the vacuole, Chr XII from 627120-628199, Verified ORF
YNR001C	23.06	1.00	36	2182.4691	1	YNR001C	CIT1 SGDID:S000005284,Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein, Chr XIV from 631063-629624, reverse complement, Verified ORF
YJL140W	10.87	0.94	1	120.8935	1	YJL140W	RPB4 SGDID:S000003676,RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; dispensable under some environmental conditions; involved in export of mRNA to cytoplasm under stress conditions; involved in telomere maintenance, Chr X from 150880-151545, Verified ORF
YKL157W	51.066	1.00	52	1423.562	1	YKL157W	APE2 SGDID:S000001640,Zinc-dependent metallopeptidase yscII, may have a role in obtaining leucine from dipeptide substrates; sequence coordinates have changed since RT-PCR analysis showed that the adjacent ORF YKL158W comprises the 5' exon of APE2\YKL157W, Chr XI from 154996-155276,155660-158186, Verified ORF
YIL116W	15.13	0.99	2	182.9494	1	YIL116W	HIS5 SGDID:S000001378,Histidinol-phosphate aminotransferase, catalyzes the seventh step in histidine biosynthesis; responsive to general control of amino acid biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts, Chr IX from 142925-144082, Verified ORF
YGR100W	45.1	0.88	3	81.8337	1	YGR100W	MDR1 SGDID:S000003332,Cytoplasmic GTPase-activating protein for Ypt\Rab transport GTPases Ypt6p, Ypt31p and Sec4p; involved in recycling of internalized proteins and regulation of Golgi secretory function, Chr VII from 690249-693101, Verified ORF
YER088C	24.25	0.91	6	314.7645	1	YER088C	DOT6 SGDID:S000000890,Protein of unknown function, involved in telomeric gene silencing and filamentation, Chr V from 335184-333172, reverse complement, Verified ORF
YER172C	87.956	0.82	4	52.133	1	YER172C	BRR2 SGDID:S000000974,RNA-dependent ATPase RNA helicase involved in the facilitation and disruption of snRNA interactions, required for disruption of U4\U6 base-pairing in native snRNPs to activate the spliceosome for catalysis, Chr V from 536016-529525, reverse complement, Verified ORF
YDL112W	65.284	1.00	9	192.7261	1	YDL112W	TRM3 SGDID:S000002270,2'-O-ribose methyltransferase, catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs, Chr IV from 258915-263225, Verified ORF
YER014W	31.93	0.96	1	42.0317	1	YER014W	HEM14 SGDID:S000000816,Protoporphyrinogen oxidase, a mitochondrial enzyme that catalyzes the seventh step in the heme biosynthetic pathway, converting protoporphyrinogen IX to protoporphyrin IX, Chr V from 182599-184218, Verified ORF
YBL080C	23.45	0.88	10	524.6198	1	YBL080C	PET112 SGDID:S000000176,Protein required for mitochondrial translation; mutation is functionally complemented by a Bacillus subtilis ortholog, Chr II from 74692-73067, reverse complement, Verified ORF
YNL034W	18.568	0.68	12	614.3699	1	YNL034W	YNL034W SGDID:S000004979,Hypothetical protein, Chr XIV from 570478-572316, Uncharacterized ORF
YER158C	21.49	0.96	19	1186.5699	1	YER158C	YER158C SGDID:S000000960,Protein of unknown function, has similarity to Afr1p; potentially phosphorylated by Cdc28p, Chr V from 490573-488852, reverse complement, Uncharacterized ORF
YNL189W	12.52	1.00	8	893.286	1	YNL189W	SRP1 SGDID:S000005133,Karyopherin alpha homolog, forms a dimer with karyopherin beta Kap95p to mediate import of nuclear proteins, binds the nuclear localization signal of the substrate during import; may also play a role in regulation of protein degradation, Chr XIV from 284261-285889, Verified ORF
YER049W	30.867	1.00	13	588.781	1	YER049W	YER049W SGDID:S000000851,Hypothetical protein, Chr V from 251727-253661, Uncharacterized ORF
YKL109W	17.59	0.89	2	141.4682	1	YKL109W	HAP4 SGDID:S000001592,Subunit of the heme-activated, glucose-repressed Hap2p\3p\4p\5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; provides the principal activation function of the complex, Chr XI from 231871-233535, Verified ORF
YFR001W	8.33	1.00	5	839.1312	1	YFR001W	LOC1 SGDID:S000001897,Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro; constituent of 66S pre-ribosomal particles, Chr VI from 149105-149719, Verified ORF
YGL091C	10.29	0.92	1	124.9906	1	YGL091C	NBP35 SGDID:S000003059,Essential nuclear protein, evolutionarily conserved putative ATPase; exhibits genetic interaction with CDC2 encoding the catalytic subunit of DNA polymerase delta, Chr VII from 343045-342059, reverse complement, Verified ORF
YER042W	9.562	0.98	4	573.1156	1	YER042W	MXR1 SGDID:S000000844,Peptide methionine sulfoxide reductase, reverses the oxidation of methionine residues; involved in oxidative damage repair, providing resistance to oxidative stress and regulation of lifespan, Chr V from 234936-235490, Verified ORF
YJL100W	22.44	0.98	9	549.4784	1	YJL100W	LSB6 SGDID:S000003636,Phosphatidylinositol 4-kinase that binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization, Chr X from 237181-239004, Verified ORF
YHR047C	44.48	1.00	36	1131.4689	1	YHR047C	AAP1 SGDID:S000001089,Arginine\alanine aminopeptidase, overproduction stimulates glycogen accumulation, Chr VIII from 201303-198733, reverse complement, Verified ORF
YIL075C	45.695	1.00	12	367.1279	1	YIL075C	RPN2 SGDID:S000001337,Subunit of the 26S proteasome, substrate of the N-acetyltransferase Nat1p, Chr IX from 220697-217860, reverse complement, Verified ORF
YJL192C	8.21	0.82	1	139.6289	1	YJL192C	SOP4 SGDID:S000003728,ER-membrane protein; suppressor of pma1-7, deletion of SOP4 slows down the export of wild-type Pma1p and Pma1-7 from the ER, Chr X from 73413-72709, reverse complement, Verified ORF
YJL171C	9.55	0.99	5	724.614	1	YJL171C	YJL171C SGDID:S000003707,GPI-anchored cell wall protein of unknown function; induced in response to cell wall damaging agents and by mutations in genes involved in cell wall biogenesis; sequence similarity to YBR162C\TOS1, a covalently bound cell wall protein, Chr X from 100888-99698, reverse complement, Verified ORF
YLR369W	35.1	0.89	14	496.2675	1	YLR369W	SSQ1 SGDID:S000004361,Mitochondrial hsp70-type molecular chaperone, required for assembly of iron\sulfur clusters into proteins at a step after cluster synthesis, and for maturation of Yfh1p, which is a homolog of human frataxin implicated in Friedreich's ataxia, Chr XII from 859551-861524, Verified ORF
YGL201C	40.178	1.00	11	382.7447	1	YGL201C	MCM6 SGDID:S000003169,Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex, Chr VII from 120911-117858, reverse complement, Verified ORF
YBR039W	16.015	1.00	20	1745.8541	1	YBR039W	ATP3 SGDID:S000000243,Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis, Chr II from 315575-316510, Verified ORF
YAL035W	35.569	1.00	41	1611.451	1	YAL035W	FUN12 SGDID:S000000033,GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2, Chr I from 76428-79436, Verified ORF
YBR259W	32.25	0.69	4	119.6421	1	YBR259W	YBR259W SGDID:S000000463,Putative protein of unknown function; YBR259W is not an essential gene, Chr II from 730382-732448, Uncharacterized ORF
YNL015W	5.45	0.99	1	253.9473	1	YNL015W	PBI2 SGDID:S000004960,Cytosolic inhibitor of vacuolar proteinase B, required for efficient vacuole inheritance; with thioredoxin forms protein complex LMA1, which assists in priming SNARE molecules and promotes vacuole fusion, Chr XIV from 605385-605612, Verified ORF
YGL181W	14.28	0.97	1	94.9616	1	YGL181W	GTS1 SGDID:S000003149,Protein containing a zinc-finger in the N-terminus and a long Gln-rich region in the C-terminus; regulates ultradian rhythm, cell size, cell cycle, lifespan, sporulation, heat tolerance, and multidrug transport, Chr VII from 157912-159102, Verified ORF
YPR036W	22.839	1.00	45	2754.4845	1	YPR036W	VMA13 SGDID:S000006240,Subunit H of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; serves as an activator or a structural stabilizer of the V-ATPase, Chr XVI from 643833-645269, Verified ORF
YLR096W	48.92	0.73	3	62.5838	1	YLR096W	KIN2 SGDID:S000004086,Serine\threonine protein kinase involved in regulation of exocytosis; localizes to the cytoplasmic face of the plasma membrane; closely related to Kin1p, Chr XII from 332591-336034, Verified ORF
YEL060C	23.067	0.95	18	1036.3582	1	YEL060C	PRB1 SGDID:S000000786,Vacuolar proteinase B (yscB), a serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation, Chr V from 41953-40046, reverse complement, Verified ORF
YDL226C	18.47	1.00	22	1665.1781	1	YDL226C	GCS1 SGDID:S000002385,ADP-ribosylation factor GTPase activating protein (ARF GAP), involved in ER-Golgi transport; shares functional similarity with Glo3p, Chr IV from 52174-51116, reverse complement, Verified ORF
YOL051W	36.59	1.00	9	343.8626	1	YOL051W	GAL11 SGDID:S000005411,Component of the Mediator complex; interacts with RNA polymerase II and the general transcription factors to form the RNA polymerase II holoenzyme; affects transcription by acting as target of activators and repressors, Chr XV from 234939-238184, Verified ORF
YDR394W	18.14	1.00	7	539.4679	1	YDR394W	RPT3 SGDID:S000002802,One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; substrate of N-acetyltransferase B, Chr IV from 1261673-1262959, Verified ORF
YDR188W	22.55	1.00	29	1797.862	1	YDR188W	CCT6 SGDID:S000002596,Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif, Chr IV from 836418-838058, Verified ORF
YMR243C	5.83	0.99	12	2848.7399	1	YMR243C	ZRC1 SGDID:S000004856,Vacuolar membrane zinc transporter, transports zinc from the cytosol into the vacuole for storage; also has a role in resistance to zinc shock resulting from a sudden influx of zinc into the cytoplasm, Chr XIII from 756165-754837, reverse complement, Verified ORF
YDR324C	31.35	0.98	4	174.8048	1	YDR324C	UTP4 SGDID:S000002732,Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA, Chr IV from 1116760-1114430, reverse complement, Verified ORF
YNR034W-A	8.08	0.99	1	171.2887	1	YNR034W-A	YNR034W-A SGDID:S000007525,Hypothetical protein, Chr XIV from 692563-692859, Uncharacterized ORF
YMR079W	18.31	1.00	78	5955.4032	1	YMR079W	SEC14 SGDID:S000004684,Phosphatidylinositol\phosphatidylcholine transfer protein involved in coordinate regulation of PtdIns and PtdCho metabolism, products of which are regulators in Golgi to plasma membrane transport; functionally homologous to mammalian PITPs, Chr XIII from 424988-424996,425153-426058, Verified ORF
YKR081C	11.018	1.00	19	2410.7698	1	YKR081C	RPF2 SGDID:S000001789,Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles, Chr XI from 592182-591148, reverse complement, Verified ORF
YEL023C	28.05	0.97	8	386.753	1	YEL023C	YEL023C SGDID:S000000749,Hypothetical protein, Chr V from 110552-108504, reverse complement, Uncharacterized ORF
YNL045W	29.9	1.00	32	1496.1795	1	YNL045W	YNL045W SGDID:S000004990,Leucyl aminopeptidase (leukotriene A4 hydrolase) with epoxide hydrolase activity, metalloenzyme containing one zinc atom; role in vivo is not defined, Chr XIV from 542964-544979, Verified ORF
YMR264W	9.9	1.00	12	1694.5366	1	YMR264W	CUE1 SGDID:S000004877,Endoplasmic reticulum membrane protein that recruits the ubiquitin-conjugating enzyme Ubc7p to the ER where it functions in protein degradation; contains a CUE domain that binds ubiquitin to facilitate intramolecular monoubiquitination, Chr XIII from 795804-796415, Verified ORF
YLR401C	30.648	1.00	9	410.5303	1	YLR401C	DUS3 SGDID:S000004393,Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; contains a consensus oleate response element (ORE) in its promoter region, Chr XII from 924448-922442, reverse complement, Uncharacterized ORF
YLR200W	6.36	1.00	9	1978.2915	1	YLR200W	YKE2 SGDID:S000004190,Subunit of the heterohexameric Gim\prefoldin protein complex involved in the folding of alpha-tubulin, beta-tubulin, and actin, Chr XII from 549014-549358, Verified ORF
YBR080C	39.82	1.00	11	386.1858	1	YBR080C	SEC18 SGDID:S000000284,ATPase required for the release of Sec17p during the 'priming' step in homotypic vacuole fusion and for ER to Golgi transport; homolog of the mammalian NSF, Chr II from 400884-398608, reverse complement, Verified ORF
YPR141C	32.53	0.97	5	208.4311	1	YPR141C	KAR3 SGDID:S000006345,Minus-end-directed microtubule motor that functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate, Chr XVI from 817919-815730, reverse complement, Verified ORF
YOR243C	34.899	1.00	16	640.9319	1	YOR243C	PUS7 SGDID:S000005769,Pseudouridine synthase, catalyzes pseudouridylation at position 35 in U2 snRNA, position 13 in cytoplasmic tRNAs, and position 35 in pre-tRNA(Tyr); Asp(256) mutation abolishes activity; conserved in archaea, some bacteria, and vertebrates, Chr XV from 792242-790212, reverse complement, Verified ORF
YIL133C	14.3	1.00	57	5572.4185	1	YIL133C	RPL16A SGDID:S000001395,N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Bp, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p, Chr IX from 99416-99386,99095-98527, reverse complement, Verified ORF
YGR286C	13.7	0.73	2	148.9831	1	YGR286C	BIO2 SGDID:S000003518,Biotin synthase, catalyzes the conversion of dethiobiotin to biotin, which is the last step of the biotin biosynthesis pathway; complements E. coli bioB mutant, Chr VII from 1064946-1063819, reverse complement, Verified ORF
YJR136C	16.41	1.00	20	1703.8302	1	YJR136C	YJR136C SGDID:S000003897,Putative protein of unknown function; may interact with mitochondrial ribosomal protein Rsm23p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, Chr X from 678622-677357, reverse complement, Uncharacterized ORF
YAL005C	25.765	1.00	783	42485.0885	1	YAL005C	SSA1 SGDID:S000000004,ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall, Chr I from 141433-139505, reverse complement, Verified ORF
YER155C	89.8030000000001	1.00	29	451.4525	1	YER155C	BEM2 SGDID:S000000957,Rho GTPase activating protein (RhoGAP) involved in the control of cytoskeleton organization and cellular morphogenesis; required for bud emergence, Chr V from 482843-476340, reverse complement, Verified ORF
YNL282W	5.13	0.96	1	261.6126	1	YNL282W	POP3 SGDID:S000005226,Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends, Chr XIV from 107687-108274, Verified ORF
YNL207W	17.129	1.00	4	326.4621	1	YNL207W	RIO2 SGDID:S000005151,Essential serine kinase involved in the processing of the 20S pre-rRNA into mature 18S rRNA; has similarity to Rio1p, Chr XIV from 255354-256631, Verified ORF
YER110C	44.2	1.00	362	11449.6237	1	YER110C	KAP123 SGDID:S000000912,Karyopherin beta, mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and import of histones H3 and H4; localizes to the nuclear pore, nucleus, and cytoplasm; exhibits genetic interactions with RAI1, Chr V from 382099-378758, reverse complement, Verified ORF
YAL030W	4.12	1.00	6	2035.9117	1	YAL030W	SNC1 SGDID:S000000028,Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane; proposed to be involved in endocytosis; member of the synaptobrevin\VAMP family of R-type v-SNARE proteins, Chr I from 87287-87388,87502-87753, Verified ORF
YPL131W	12.09	1.00	325	37580.4496	1	YPL131W	RPL5 SGDID:S000006052,Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins; binds 5S rRNA and is required for 60S subunit assembly, Chr XVI from 303120-304013, Verified ORF
YER005W	23.51	1.00	16	951.4199	1	YER005W	YND1 SGDID:S000000807,Apyrase with wide substrate specificity, involved in preventing the inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates which are inhibitors of glycotransferases; partially redundant with Gda1p, Chr V from 160549-162441, Verified ORF
YGL137W	35.108	1.00	66	2628.1052	1	YGL137W	SEC27 SGDID:S000003105,Essential beta'-coat protein of the COPI coatomer, involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP, Chr VII from 249874-249891,250092-252743, Verified ORF
YPL040C	46.097	0.99	11	330.2631	1	YPL040C	ISM1 SGDID:S000005961,Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth, Chr XVI from 478998-475990, reverse complement, Verified ORF
YNL212W	43.979	1.00	2	63.5754	1	YNL212W	VID27 SGDID:S000005156,Cytoplasmic protein of unknown function; possibly involved in vacuolar protein degradation; not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase); null mutants exhibit normal growth, Chr XIV from 247462-249810, Verified ORF
YER156C	19.38	1.00	13	937.766	1	YER156C	YER156C SGDID:S000000958,Hypothetical protein, Chr V from 484336-483320, reverse complement, Uncharacterized ORF
YHR005C-A	5.47	0.99	1	253.0187	1	YHR005C-A	MRS11 SGDID:S000003530,Essential protein of the mitochondrial intermembrane space, forms a complex with Tim9p (TIM10 complex) that mediates insertion of hydrophobic proteins at the inner membrane, has homology to Mrs5p, which is also involved in this process, Chr VIII from 115896-115615, reverse complement, Verified ORF
YMR120C	30.439	1.00	125	5740.9603	1	YMR120C	ADE17 SGDID:S000004727,Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade16p; ade16 ade17 mutants require adenine and histidine, Chr XIII from 509279-507501, reverse complement, Verified ORF
YLR454W	122.034	1.00	39	446.7748	1	YLR454W	YLR454W SGDID:S000004446,The authentic, non-tagged protein was localized to the mitochondria, Chr XII from 1043996-1051882, Uncharacterized ORF
YLR224W	11.81	0.77	1	91.1477	1	YLR224W	YLR224W SGDID:S000004214,Hypothetical protein, Chr XII from 586466-587575, Uncharacterized ORF
YPL016W	33.23	0.99	7	291.5464	1	YPL016W	SWI1 SGDID:S000005937,Subunit of the SWI\SNF chromatin remodeling complex, which regulates transcription by remodeling chromosomes; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2, Chr XVI from 521011-524955, Verified ORF
YNR023W	25.87	0.97	22	1153.1953	1	YNR023W	SNF12 SGDID:S000005306,73 kDa subunit of the SWI\SNF chromatin remodeling complex involved in transcriptional regulation; homolog of Rsc6p subunit of the RSC chromatin remodeling complex; deletion mutants are temperature-sensitive, Chr XIV from 670420-672120, Verified ORF
YKL064W	25.5	0.94	3	154.6015	1	YKL064W	MNR2 SGDID:S000001547,Putative magnesium transporter; has similarity to Alr1p and Alr2p, which mediate influx of Mg2+ and other divalent cations, Chr XI from 317408-320317, Verified ORF
YER122C	21.645	0.99	7	447.5901	1	YER122C	GLO3 SGDID:S000000924,ADP-ribosylation factor GTPase activating protein (ARF GAP), involved in ER-Golgi transport; shares functional similarity with Gcs1p, Chr V from 404348-402867, reverse complement, Verified ORF
YDR322C-A	5.55	1.00	3	755.6717	1	YDR322C-A	TIM11 SGDID:S000007255,Subunit e of mitochondrial F1F0-ATPase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; essential for the dimeric state of ATP synthase, Chr IV from 1112290-1112000, reverse complement, Verified ORF
YGR150C	45.856	0.85	21	544.1854	1	YGR150C	YGR150C SGDID:S000003382,Putative protein of unknown function; deletion mutant has growth defects on both non-fermentable carbon sources and rich medium; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; contains PPR motifs, Chr VII from 793058-790464, reverse complement, Uncharacterized ORF
YGR074W	3.89	0.99	2	711.5747	1	YGR074W	SMD1 SGDID:S000003306,Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D1, Chr VII from 635716-636156, Verified ORF
YLR390W-A	5.52	0.98	2	496.3887	1	YLR390W-A	CCW14 SGDID:S000006429,Covalently linked cell wall glycoprotein, present in the inner layer of the cell wall, Chr XII from 903724-904440, Verified ORF
YDR089W	33.33	0.73	3	91.8573	1	YDR089W	YDR089W SGDID:S000002496,Hypothetical protein, Chr IV from 622109-624718, Uncharacterized ORF
YGL180W	39.33	0.90	8	255.9254	1	YGL180W	ATG1 SGDID:S000003148,Protein serine\threonine kinase, required for autophagy and for the cytoplasm-to-vacuole targeting (Cvt) pathway, Chr VII from 160071-162764, Verified ORF
YDR017C	40.6	0.97	18	601.2057	1	YDR017C	KCS1 SGDID:S000002424,Inositol hexaphosphate kinase, phosphorylates inositol hexakisphosphate (InsP6) to diphosphoinositol polyphosphates, required for proper vacuole morphology and involved in salt stress response, contains two leucine heptad repeats, Chr IV from 482264-479112, reverse complement, Verified ORF
YMR176W	68.859	0.95	5	96.4356	1	YMR176W	ECM5 SGDID:S000004788,Non-essential protein of unknown function, contains ATP\GTP-binding site motif A; null mutant exhibits cellular volume up to four times greater than wild-type, also large drooping buds with elongated necks, Chr XIII from 611739-615974, Verified ORF
YML070W	28.74	1.00	34	1653.8536	1	YML070W	DAK1 SGDID:S000004535,Dihydroxyacetone kinase, required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation, Chr XIII from 133475-135229, Verified ORF
YPL043W	34.77	1.00	8	321.6549	1	YPL043W	NOP4 SGDID:S000005964,Nucleolar protein, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs), Chr XVI from 469936-471993, Verified ORF
YHR011W	22.62	0.68	3	126.0789	1	YHR011W	DIA4 SGDID:S000001053,Probable mitochondrial seryl-tRNA synthetase, mutant displays increased invasive and pseudohyphal growth, Chr VIII from 127774-129114, Verified ORF
YOR048C	44.558	1.00	16	501.9947	1	YOR048C	RAT1 SGDID:S000005574,Nuclear 5' to 3' single-stranded RNA exonuclease, involved in RNA metabolism, including rRNA and snRNA processing as well as mRNA transcription termination, Chr XV from 421651-418631, reverse complement, Verified ORF
YDL235C	9.04	0.98	1	151.5523	1	YDL235C	YPD1 SGDID:S000002394,Phosphorelay intermediate protein, phosphorylated by the plasma membrane sensor Sln1p in response to osmotic stress and then in turn phosphorylates the response regulators Ssk1p in the cytosol and Skn7p in the nucleus, Chr IV from 33918-33415, reverse complement, Verified ORF
YBR275C	85.57	1.00	17	277.736	1	YBR275C	RIF1 SGDID:S000000479,Protein that binds to the Rap1p C-terminus and acts synergistically with Rif2p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation, Chr II from 757101-751351, reverse complement, Verified ORF
YOR175C	21.17	0.87	1	57.4517	1	YOR175C	YOR175C SGDID:S000005701,Member of the MBOAT family of putative membrane-bound O-acyltransferases, Chr XV from 661675-659816, reverse complement, Uncharacterized ORF
YLR278C	39.69	0.65	1	22.8948	1	YLR278C	YLR278C SGDID:S000004268,Protein of unknown function, localizes to the nucleus; potential Cdc28p substrate, Chr XII from 704026-700001, reverse complement, Uncharacterized ORF
YHR025W	10.5	1.00	58	7722.2455	1	YHR025W	THR1 SGDID:S000001067,Homoserine kinase, conserved protein required for threonine biosynthesis; expression is regulated by the GCN4-mediated general amino acid control pathway, Chr VIII from 159431-160504, Verified ORF
YNL118C	42.73	1.00	5	163.5844	1	YNL118C	DCP2 SGDID:S000005062,Catalytic subunit of the Dcp1p-Dcp2p decapping enzyme complex, which removes the 5' cap structure from mRNAs prior to their degradation; member of the Nudix hydrolase family, Chr XIV from 405566-402654, reverse complement, Verified ORF
YNL037C	15.969	1.00	40	3501.7664	1	YNL037C	IDH1 SGDID:S000004982,Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase, which catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle, Chr XIV from 559003-557921, reverse complement, Verified ORF
YDR099W	12.79	0.99	1	108.2105	1	YDR099W	BMH2 SGDID:S000002506,14-3-3 protein, minor isoform; binds proteins and DNA, involved in regulation of many processes including exocytosis and vesicle transport, Ras\MAPK signaling during pseudohyphal development, rapamycin-sensitive signaling, and others, Chr IV from 653604-654425, Verified ORF
YNL278W	40.79	0.99	5	169.6509	1	YNL278W	CAF120 SGDID:S000005222,Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation, Chr XIV from 113271-116453, Verified ORF
YNR050C	22.5	1.00	30	1863.9903	1	YNR050C	LYS9 SGDID:S000005333,Saccharopine dehydrogenase (NADP+, L-glutamate-forming); catalyzes the formation of saccharopine from alpha-aminoadipate 6-semialdehyde, which is the seventh step in lysine biosynthesis pathway, Chr XIV from 715390-714050, reverse complement, Verified ORF
YJL109C	78.71	1.00	13	230.897	1	YJL109C	UTP10 SGDID:S000003645,Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA, Chr X from 217227-211918, reverse complement, Verified ORF
YGL179C	17.1	0.80	6	392.419	1	YGL179C	TOS3 SGDID:S000003147,Protein kinase, related to and functionally redundant with Elm1p and Sak1p for the phosphorylation and activation of Snf1p; functionally orthologous to LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome, Chr VII from 165097-163415, reverse complement, Verified ORF
YMR216C	31.18	0.85	5	190.5538	1	YMR216C	SKY1 SGDID:S000004829,SR protein kinase (SRPK) involved in regulating proteins involved in mRNA metabolism and cation homeostasis; similar to human SRPK1, Chr XIII from 701038-698810, reverse complement, Verified ORF
YDR211W	27.12	1.00	9	463.9356	1	YDR211W	GCD6 SGDID:S000002619,Catalytic epsilon subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression, Chr IV from 884724-886862, Verified ORF
YPL169C	22.59	0.96	1	59.41	1	YPL169C	MEX67 SGDID:S000006090,Poly(A)RNA binding protein involved in nuclear mRNA export, component of the nuclear pore; ortholog of human TAP, Chr XVI from 230837-229038, reverse complement, Verified ORF
YLR196W	24.43	1.00	15	858.3663	1	YLR196W	PWP1 SGDID:S000004186,Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily, Chr XII from 543970-545700, Verified ORF
YOL038W	9.42	1.00	17	2522.9168	1	YOL038W	PRE6 SGDID:S000005398,20S proteasome alpha-type subunit, Chr XV from 255336-256100, Verified ORF
YKL134C	36.07	1.00	7	271.3043	1	YKL134C	OCT1 SGDID:S000001617,Mitochondrial intermediate peptidase, cleaves N-terminal residues of a subset of proteins upon import, after their cleavage by mitochondrial processing peptidase (Mas1p-Mas2p); may contribute to mitochondrial iron homeostasis, Chr XI from 191441-189129, reverse complement, Verified ORF
YKR006C	15.12	0.98	1	90.6106	1	YKR006C	MRPL13 SGDID:S000001714,Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation, Chr XI from 450860-450066, reverse complement, Verified ORF
YPL207W	29.636	0.99	2	93.4007	1	YPL207W	YPL207W SGDID:S000006128,Hypothetical protein, Chr XVI from 159908-162340, Uncharacterized ORF
YDR190C	24.8	1.00	7	394.5947	1	YDR190C	RVB1 SGDID:S000002598,Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; member of the RUVB-like protein family, Chr IV from 841992-840601, reverse complement, Verified ORF
YBL039C	25.336	1.00	53	2924.4401	1	YBL039C	URA7 SGDID:S000000135,Major CTP synthase isozyme (see also URA8), catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis, Chr II from 145731-143992, reverse complement, Verified ORF
YBR079C	48.12	1.00	116	3370.0572	1	YBR079C	RPG1 SGDID:S000000283,Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes, Chr II from 398271-395377, reverse complement, Verified ORF
YGL203C	27.843	0.96	11	530.2159	1	YGL203C	KEX1 SGDID:S000003171,Protease involved in the processing of killer toxin and alpha factor precursor; cleaves Lys and Arg residues from the C-terminus of peptides and proteins, Chr VII from 114668-112479, reverse complement, Verified ORF
YPL271W	4.38	0.73	1	232.9987	1	YPL271W	ATP15 SGDID:S000006192,Epsilon subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis, Chr XVI from 30079-30267, Verified ORF
YHR077C	53.279	0.80	3	62.9738	1	YHR077C	NMD2 SGDID:S000001119,Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p; involved in telomere maintenance, Chr VIII from 255758-255753,255639-252376, reverse complement, Verified ORF
YLR356W	3.04	0.95	1	436.8727	1	YLR356W	YLR356W SGDID:S000004348,Hypothetical protein, Chr XII from 840320-840913, Uncharacterized ORF
YMR307W	14.86	1.00	43	4045.3356	1	YMR307W	GAS1 SGDID:S000004924,Beta-1.3-glucanosyltransferase, required for cell wall assembly; localizes to the cell surface via a glycosylphosphatidylinositol (GPI) anchor, Chr XIII from 887002-888681, Verified ORF
YPL057C	16.58	0.65	2	109.6134	1	YPL057C	SUR1 SGDID:S000005978,Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex with probable regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Csh1p, Chr XVI from 453054-451906, reverse complement, Verified ORF
YBR073W	41.48	0.78	5	131.4409	1	YBR073W	RDH54 SGDID:S000000277,DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during mitosis and meiosis; proposed to be involved in crossover interference, Chr II from 383209-385983, Verified ORF
YLR432W	19.36	1.00	63	4549.2531	1	YLR432W	IMD3 SGDID:S000004424,Inosine monophosphate dehydrogenase, catalyzes the first step of GMP biosynthesis, member of a four-gene family in S. cerevisiae, constitutively expressed, Chr XII from 1002554-1004125, Verified ORF
YNL082W	41.497	0.70	4	94.3292	1	YNL082W	PMS1 SGDID:S000005026,ATP-binding protein required for mismatch repair in mitosis and meiosis; functions as a heterodimer with Mlh1p, binds double- and single-stranded DNA via its N-terminal domain, similar to E. coli MutL, Chr XIV from 473392-476013, Verified ORF
YDL237W	14.27	1.00	11	1077.6398	1	YDL237W	YDL237W SGDID:S000002396,Hypothetical protein, Chr IV from 30657-31829, Uncharacterized ORF
YDL195W	38.81	1.00	53	1909.1371	1	YDL195W	SEC31 SGDID:S000002354,Essential phosphoprotein component (p150) of the COPII coat of secretory pathway vesicles, in complex with Sec13p; required for ER-derived transport vesicle formation, Chr IV from 107209-111030, Verified ORF
YNL161W	17.648	0.68	1	53.8664	1	YNL161W	CBK1 SGDID:S000005105,Serine\threonine protein kinase that regulates cell morphogenesis pathways; involved in cell wall biosynthesis, apical growth, proper mating projection morphology, bipolar bud site selection in diploid cells, and cell separation, Chr XIV from 332599-334869, Verified ORF
YPR095C	49.517	0.73	2	41.2195	1	YPR095C	SYT1 SGDID:S000006299,Guanine nucleotide exchange factor (GEF) for Arf proteins; involved in vesicular transport; suppressor of ypt3 mutations; member of the Sec7-domain family, Chr XVI from 724715-721035, reverse complement, Verified ORF
YLL048C	67.205	1.00	18	374.4344	1	YLL048C	YBT1 SGDID:S000003971,Transporter of the ATP-binding cassette (ABC) family involved in bile acid transport; similar to mammalian bile transporters, Chr XII from 46264-41279, reverse complement, Verified ORF
YDR334W	60.31	1.00	17	394.0619	1	YDR334W	SWR1 SGDID:S000002742,Swi2\Snf2-related ATPase, component of the SWR1 complex; required for the incorporation of Htz1p into chromatin, Chr IV from 1135927-1140471, Verified ORF
YDL052C	13.508	1.00	8	827.9494	1	YDL052C	SLC1 SGDID:S000002210,1-acyl-sn-gylcerol-3-phosphate acyltransferase, catalyzes the acylation of lysophosphatidic acid to form phosphatidic acid, a key intermediate in lipid metabolism; located in lipid particles and endoplasmic reticulum, Chr IV from 363583-362672, reverse complement, Verified ORF
YGL148W	15.999	1.00	43	3757.3402	1	YGL148W	ARO2 SGDID:S000003116,Bifunctional chorismate synthase and flavin reductase, catalyzes the conversion of 5-enolpyruvylshikimate 3-phosphate (EPSP) to form chorismate, which is a precursor to aromatic amino acids, Chr VII from 226404-227534, Verified ORF
YDR310C	50.798	0.99	2	54.4908	1	YDR310C	SUM1 SGDID:S000002718,Transcriptional repressor required for mitotic repression of middle sporulation-specific genes; involved in telomere maintenance, regulated by the pachytene checkpoint, Chr IV from 1084312-1081124, reverse complement, Verified ORF
YBR084C-A	6.95	1.00	216	43448.4071	2	YBR084C-A,YBL027W	RPL19A SGDID:S000002156,Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal, Chr II from 415255-415254,414747-414180, reverse complement, Verified ORF
YLL029W	22.97	0.99	3	180.7591	1	YLL029W	YLL029W SGDID:S000003952,Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLL029W is not an essential gene but mutant is defective in spore formation, Chr XII from 81460-83709, Uncharacterized ORF
YDR161W	11.66	1.00	6	719.3787	1	YDR161W	YDR161W SGDID:S000002568,interacts with PP2C, Chr IV from 779040-780203, Uncharacterized ORF
YOL021C	41.179	1.00	4	135.7966	1	YOL021C	DIS3 SGDID:S000005381,Nucleolar exosome component, involved in rRNA processing and RNA degradation, binds Gsp1p\Ran and enhances the GEF activity of Srm1p, implicated in mitotic control, homologous to the E. coli RNase R of the RNase II family, Chr XV from 285427-282422, reverse complement, Verified ORF
YNL299W	26.97	0.83	2	86.0462	1	YNL299W	TRF5 SGDID:S000005243,Poly (A) polymerase involved in nuclear RNA quality control based on: homology with Trf4p, genetic interactions with TRF4 mutants, physical interaction with Mtr4p (TRAMP subunit), and by direct assay; disputed role as a sigma DNA polymerase, Chr XIV from 66517-68445, Verified ORF
Q0255	25.44	0.76	3	125.2918	1	Q0255	Q0255 SGDID:S000007282,Hypothetical protein, Chr Mito from 74495-75622,75663-75872,75904-75984, Uncharacterized ORF
YOL144W	24.33	1.00	5	287.2981	1	YOL144W	NOP8 SGDID:S000005504,Nucleolar protein required for 60S ribosomal subunit biogenesis, Chr XV from 53097-54551, Verified ORF
YGL111W	23.839	0.98	1	57.4702	1	YGL111W	NSA1 SGDID:S000003079,Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis, Chr VII from 299981-301372, Verified ORF
YBR181C	13.36	1.00	335	35054.4583	2	YBR181C,YPL090C	RPS6B SGDID:S000000385,Protein component of the small (40S) ribosomal subunit; identical to Rps6Ap and has similarity to rat S6 ribosomal protein, Chr II from 592769-592764,592411-591707, reverse complement, Verified ORF
YNL055C	15.89	1.00	189	16628.1073	1	YNL055C	POR1 SGDID:S000005000,Mitochondrial porin (voltage-dependent anion channel), outer membrane protein required for the maintenance of mitochondrial osmotic stability and mitochondrial membrane permeability, Chr XIV from 518846-517995, reverse complement, Verified ORF
YMR033W	22.27	0.95	2	119.2719	1	YMR033W	ARP9 SGDID:S000004636,Actin-related protein involved in transcriptional regulation; subunit of the chromatin remodeling Snf\Swi complex, Chr XIII from 337787-337816,337903-339276, Verified ORF
YJR159W	18.839	0.86	3	191.455	1	YJR159W	SOR1 SGDID:S000003920,Sorbitol dehydrogenase; expression is induced in the presence of sorbitol, Chr X from 735960-737033, Verified ORF
YOR285W	6.9	1.00	19	3849.5451	1	YOR285W	YOR285W SGDID:S000005811,Protein of unknown function, localized to the mitochondrial outer membrane, Chr XV from 849634-850053, Verified ORF
YGL039W	17.819	0.92	3	216.5362	1	YGL039W	YGL039W SGDID:S000003007,Oxidoreductase, catalyzes NADPH-dependent reduction of the bicyclic diketone bicyclo[2.2.2]octane-2,6-dione (BCO2,6D) to the chiral ketoalcohol (1R,4S,6S)-6-hydroxybicyclo[2.2.2]octane-2-one (BCO2one6ol), Chr VII from 423967-425013, Verified ORF
YNL147W	3.36	0.93	4	1547.7776	1	YNL147W	LSM7 SGDID:S000005091,Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA, Chr XIV from 350942-350959,351080-351385, Verified ORF
YLR325C	4.4	1.00	66	20969.8909	1	YLR325C	RPL38 SGDID:S000004317,Protein component of the large (60S) ribosomal subunit, has similarity to rat L38 ribosomal protein, Chr XII from 781379-781143, reverse complement, Verified ORF
YPR022C	34.548	0.93	17	639.7552	1	YPR022C	YPR022C SGDID:S000006226,Hypothetical protein, Chr XVI from 607309-603908, reverse complement, Uncharacterized ORF
YOR014W	22.06	1.00	5	316.8614	1	YOR014W	RTS1 SGDID:S000005540,B-type regulatory subunit of protein phosphatase 2A (PP2A); homolog of the mammalian B' subunit of PP2A, Chr XV from 357674-359947, Verified ORF
YLL022C	7.25	0.99	1	190.8983	1	YLL022C	HIF1 SGDID:S000003945,Non-essential component of the HAT-B histone acetyltransferase complex (Hat1p-Hat2p-Hif1p), localized to the nucleus; has a role in telomeric silencing, Chr XII from 100200-99043, reverse complement, Verified ORF
YDR238C	39.23	1.00	21	748.3519	1	YDR238C	SEC26 SGDID:S000002646,Essential beta-coat protein of the COPI coatomer, involved in ER-to-Golgi protein trafficking and maintenance of normal ER morphology; shares 43% sequence identity with mammalian beta-coat protein (beta-COP), Chr IV from 940812-937891, reverse complement, Verified ORF
YMR207C	99.0809999999999	0.87	3	36.826	1	YMR207C	HFA1 SGDID:S000004820,Mitochondrial acetyl-coenzyme A carboxylase, catalyzes the production of malonyl-CoA in mitochondrial fatty acid biosynthesis, Chr XIII from 683563-677192, reverse complement, Verified ORF
YOR266W	21.736	0.80	4	205.8141	1	YOR266W	PNT1 SGDID:S000005792,Mitochondrial inner membrane protein involved in export of proteins from the mitochondrial matrix; overexpression of PNT1 confers resistance to the anti-Pneumocystis carinii drug pentamidine, and deletion confers increased sensitivity, Chr XV from 821022-822293, Verified ORF
YNL231C	23	1.00	4	243.1291	1	YNL231C	PDR16 SGDID:S000005175,Phosphatidylinositol transfer protein (PITP) controlled by the multiple drug resistance regulator Pdr1p, localizes to lipid particles and microsomes, controls levels of various lipids, may regulate lipid synthesis, homologous to Pdr17p, Chr XIV from 217043-215988, reverse complement, Verified ORF
YBR286W	20.859	1.00	58	3887.2226	1	YBR286W	APE3 SGDID:S000000490,Vacuolar aminopeptidase Y, processed to mature form by Prb1p, Chr II from 774696-776309, Verified ORF
YNL248C	19.42	1.00	9	647.8854	1	YNL248C	RPA49 SGDID:S000005192,RNA polymerase I subunit A49, Chr XIV from 182609-181362, reverse complement, Verified ORF
YDR120C	25.68	1.00	29	1578.7301	1	YDR120C	TRM1 SGDID:S000002527,tRNA methyltransferase, localizes to both the nucleus and mitochondrion to produce the modified base N2,N2-dimethylguanosine in tRNAs in both compartments, Chr IV from 693258-691546, reverse complement, Verified ORF
YJL012C	31.076	1.00	106	4768.5425	1	YJL012C	VTC4 SGDID:S000003549,Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion, Chr X from 413315-411150, reverse complement, Verified ORF
YMR246W	20.639	1.00	34	2303.0065	1	YMR246W	FAA4 SGDID:S000004860,Long chain fatty acyl-CoA synthetase, regulates protein modification during growth in the presence of ethanol, functions to incorporate palmitic acid into phospholipids and neutral lipids, Chr XIII from 759806-761890, Verified ORF
YGL103W	11.66	1.00	206	24698.6708	1	YGL103W	RPL28 SGDID:S000003071,Ribosomal protein L29 of the large (60S) ribosomal subunit, has similarity to E. coli L15 and rat L27a ribosomal proteins; may have peptidyl transferase activity; can mutate to cycloheximide resistance, Chr VII from 310970-311018,311530-311930, Verified ORF
YOR158W	14.747	0.97	1	91.9544	1	YOR158W	PET123 SGDID:S000005684,Mitochondrial ribosomal protein of the small subunit; PET123 exhibits genetic interactions with PET122, which encodes a COX3 mRNA-specific translational activator, Chr XV from 632165-633121, Verified ORF
YNL007C	17.7	1.00	106	8372.1598	1	YNL007C	SIS1 SGDID:S000004952,Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p; not functionally redundant with Ydj1p due to due to substrate specificity; shares similarity with bacterial DnaJ proteins, Chr XIV from 619567-618509, reverse complement, Verified ORF
YJL098W	45.38	1.00	11	338.8699	1	YJL098W	SAP185 SGDID:S000003634,Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; member of a family of similar proteins including Sap4p, Sap155p, and Sap190p, Chr X from 242000-245176, Verified ORF
YLR425W	47.359	1.00	13	383.7476	1	YLR425W	TUS1 SGDID:S000004417,Guanine nucleotide exchange factor (GEF) that functions to modulate Rhop1 activity as part of the cell integrity signaling pathway; multicopy suppressor of tor2 mutation and ypk1 ypk2 double mutation; potential Cdc28p substrate, Chr XII from 982891-986814, Verified ORF
YBR059C	40.21	1.00	11	382.4401	1	YBR059C	AKL1 SGDID:S000000263,Ser-Thr protein kinase, member (with Ark1p and Prk1p) of the Ark kinase family; involved in endocytosis and actin cytoskeleton organization, Chr II from 360185-356859, reverse complement, Verified ORF
YKL196C	12.517	1.00	12	1340.2502	1	YKL196C	YKT6 SGDID:S000001679,Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus, Chr XI from 75539-74937, reverse complement, Verified ORF
YOR187W	20.43	1.00	27	1847.5674	1	YOR187W	TUF1 SGDID:S000005713,Mitochondrial translation elongation factor Tu; comprises both GTPase and guanine nucleotide exchange factor activities, while these activities are found in separate proteins in S. pombe and humans, Chr XV from 684031-685344, Verified ORF
YNL160W	6.49	0.81	2	348.9596	1	YNL160W	YGP1 SGDID:S000005104,Cell wall-related secretory glycoprotein; induced by nutrient deprivation-associated growth arrest and upon entry into stationary phase; may be involved in adaptation prior to stationary phase entry; has similarity to Sps100p, Chr XIV from 336547-337611, Verified ORF
YGR020C	5.9	1.00	11	2606.4271	1	YGR020C	VMA7 SGDID:S000003252,Subunit F of the eight-subunit V1 peripheral membrane domain of vacuolar H+-ATPase (