Revisiting the negative example sampling problem for predicting protein-protein interactions

Yungki Park and Edward M. Marcotte
Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712

Abstract.


Yeast data sets (File format: Positive/Negative DIP_ID DIP_ID)

Set 1

Fold 1 Fold 2 Fold 3 Fold 4 Fold 5

Fold 6 Fold 7 Fold 8 Fold 9 Fold 10

Set 2

Fold 1 Fold 2 Fold 3 Fold 4 Fold 5

Fold 6 Fold 7 Fold 8 Fold 9 Fold 10

Set 3

Fold 1 Fold 2 Fold 3 Fold 4 Fold 5

Fold 6 Fold 7 Fold 8 Fold 9 Fold 10

Human data sets (File format: Positive/Negative HPRD_RefSeq_ID HPRD_RefSeq_ID)

Set 1

Fold 1 Fold 2 Fold 3 Fold 4 Fold 5

Fold 6 Fold 7 Fold 8 Fold 9 Fold 10

Set 2

Fold 1 Fold 2 Fold 3 Fold 4 Fold 5

Fold 6 Fold 7 Fold 8 Fold 9 Fold 10

Set 3

Fold 1 Fold 2 Fold 3 Fold 4 Fold 5

Fold 6 Fold 7 Fold 8 Fold 9 Fold 10


Y. Park, yungki at mail utexas edu
Feb 2011