Difference between revisions of "PSEAE CF.2010"
From Marcotte Lab
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== Supplement Tables == | == Supplement Tables == | ||
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* Table S8. Functional enrichment data for Table S7 | * Table S8. Functional enrichment data for Table S7 | ||
* Table S9. Functional enrichment data for Table S6 | * Table S9. Functional enrichment data for Table S6 | ||
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+ | == Microarray Data == | ||
+ | === CEL files === | ||
+ | ** http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/GSE21966_CEL.zip | ||
+ | ** You can also download it from http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21966 (NCBI GEO) | ||
+ | |||
+ | === Gzipped TXT files === | ||
+ | * http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.raw.txt.gz (RAW data, before pre-processing) | ||
+ | * http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.corrected.txt.gz (RMA pre-processing, PM corrected) | ||
+ | * http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.norm.txt.gz (RMA pre-processing, Quantile normalized) | ||
+ | * http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.eset_rma.txt.gz (RMA pre-processing, ExpressSet) | ||
+ | * http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.eset_mas5.txt.gz (MAS5 pre-processing, ExpressSet) | ||
+ | * http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.calls_mas5.txt.gz (MAS5 pre-processing, P/M/A calls) | ||
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[[Category:Publication]] | [[Category:Publication]] |
Revision as of 13:55, 8 September 2010
Web supplement for 'Huse HK, Kwon T, Zlosnik JEA, Speert DP, Marcotte EM, Whiteley M, Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo, mBIO, :in press (2010) PubMed '
Contents |
Supplement Tables
- Table S1. Strains
- Table S2. P. aeruginosa orthologs
- Table S3. Affymetrix microarray annotation
- Table S4. P. aeruginosa annotation
- Table S5. Differentially expressed genes between progenitors
- Table S6. Differentially expressed genes within isogenic groups (compared to each progenitor/first strain).
- Table S7. Differentially expressed genes between isogenic groups.
- Table S8. Functional enrichment data for Table S7
- Table S9. Functional enrichment data for Table S6
Microarray Data
CEL files
- http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/GSE21966_CEL.zip
- You can also download it from http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21966 (NCBI GEO)
Gzipped TXT files
- http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.raw.txt.gz (RAW data, before pre-processing)
- http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.corrected.txt.gz (RMA pre-processing, PM corrected)
- http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.norm.txt.gz (RMA pre-processing, Quantile normalized)
- http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.eset_rma.txt.gz (RMA pre-processing, ExpressSet)
- http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.eset_mas5.txt.gz (MAS5 pre-processing, ExpressSet)
- http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.calls_mas5.txt.gz (MAS5 pre-processing, P/M/A calls)