Difference between revisions of "CH391L"

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(Lectures & Handouts)
(Lectures & Handouts)
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April 5, 2011 - Classification
 
April 5, 2011 - Classification
 
* The best open software for do-it-yourself data mining: [http://www.cs.waikato.ac.nz/ml/weka/ Weka]
 
* The best open software for do-it-yourself data mining: [http://www.cs.waikato.ac.nz/ml/weka/ Weka]
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* [http://www.isibang.ac.in/pcm.htm Mahalanobis]
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* [http://www.marcottelab.org/users/CH391L/Handouts/Fedoroff.pdf SVD of gene expression 1], [http://www.marcottelab.org/users/CH391L/Handouts/Alter.pdf 2]
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* [http://www.marcottelab.org/users/CH391L/Handouts/EuropeanGenesPCA.pdf European men, their genomes, and their geography]
  
 
Mar 31, 2011 - Clustering & Classification
 
Mar 31, 2011 - Clustering & Classification

Revision as of 11:13, 5 April 2011

Lectures & Handouts

April 5, 2011 - Classification

Mar 31, 2011 - Clustering & Classification

Mar 29, 2011 - Clustering 2

An assortment of datasets for Problem Set 4, due Apr. 12, 2011

Mar 24, 2011 - Clustering

Mar 22, 2011 - Gene expression

Mar 8, 2011 - Assembling genomes + next-gen sequencing

  • We're running a bit behind on our next-gen sequencing datasets, which were intended for Problem Set 3. I'll plan to add these data to Problem Set 4. Instead, for Problem Set 3, I'll give credit for turning in one (full) paragraph laying out your planned work for your final course project. The deadline will be extended to March 10. (Turn them in by email. Remember, no class on the 10th.)
  • Here are a few examples of final projects from previous years: 1, 2, 3, 4, 5

Mar 3, 2011 - Assembling genomes

Mar 1, 2011 - Assembling genomes

Feb 24, 2011 - Gene finding

Feb 22, 2011 - HMMs and gene finding

Feb 17, 2011 - HMMs

Feb 15, 2011 - Profiles

Feb 10, 2011 - BLAST

Feb 8, 2011 - Sequence Alignment III

  • A few examples of proteins with internally repetitive sequences: 1, 2, 3
  • Repeats in the human genome, tallied here

Feb 3, 2011 - Sequence Alignment II

Jan 27, 2011 - Sequence Alignment I

Jan 25, 2011 - Perl primer