Difference between revisions of "CH391L/UTpond"

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(Created page with "== Number of reads == * V3BC21: 213,419 (F3), 199,158 (F5), 223,100 (raw) * V3BC22: 634,431 (F3), 595,251 (F5), 661,120 (raw) * V3BC23: 1,015,471 (F3), 951,357 (F5), 1,06...")
 
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* Eukaryotes:
 
* Eukaryotes:
 
* Viruses:  
 
* Viruses:  
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== Analysis tool ==
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* SAM : alignment report format
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** [http://samtools.sourceforge.net/SAM-1.3.pdf Specification PDF]
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** [http://bioinformatics.oxfordjournals.org/content/25/16/2078.long Paper]
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* SHRiMP: Alignment tool http://compbio.cs.toronto.edu/shrimp/
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** [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000386 Paper for original version)
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** [http://bioinformatics.oxfordjournals.org/content/early/2011/01/28/bioinformatics.btr046 Paper for version 2]
  
 
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[[Category:CH391L]]
 
[[Category:CH391L]]

Revision as of 09:39, 25 March 2011

Number of reads

  • V3BC21: 213,419 (F3), 199,158 (F5), 223,100 (raw)
  • V3BC22: 634,431 (F3), 595,251 (F5), 661,120 (raw)
  • V3BC23: 1,015,471 (F3), 951,357 (F5), 1,060,308 (raw)
  • V3BC24: 562,803 (F3), 525,892 (F5), 588,304 (raw)
  • V3BC25: 569,125 (F3), 531,015 (F5), 595,064 (raw)

Databases

  • Prokaryotes:
  • Eukaryotes:
  • Viruses:


Analysis tool