Difference between revisions of "ChungKwon2013 RFX2"

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(Genomic resource)
(Raw data)
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== Raw data ==
 
== Raw data ==
(Data is submitted to NCBI GEO. We will make post the link when our manuscript is accepted.)
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* http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50593
* RNA-seq, Control #1
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* RNA-seq, Control #1 (2x100 bp, paired-end)
* RNA-seq, Control #2
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* RNA-seq, Control #2 (2x100 bp, paired-end)
* RNA-seq, RFX2 Knock-down #1
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* RNA-seq, RFX2 Knock-down #1 (2x100 bp, paired-end)
* RNA-seq, RFX2 Knock-down #2
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* RNA-seq, RFX2 Knock-down #2 (2x100 bp, paired-end)
* ChIP-seq, RFX2-GFP
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* ChIP-seq, RFX2-GFP (1x50 bp, single-end)
* ChIP-seq, Control GFP
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* ChIP-seq, Control GFP (1x50 bp, single-end)
  
 
== Genomic resource ==
 
== Genomic resource ==

Revision as of 15:38, 8 May 2014

Supplementary Website for Chung M-I, Kwon T, Tu F, Brooks ER, Gupta R, Meyer M, Baker JC, Marcotte EM, Wallingford JB, Coordinated genomic control of ciliogenesis and cell movement by RFX2 (submitted).

Contents

Raw data

  • http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50593
  • RNA-seq, Control #1 (2x100 bp, paired-end)
  • RNA-seq, Control #2 (2x100 bp, paired-end)
  • RNA-seq, RFX2 Knock-down #1 (2x100 bp, paired-end)
  • RNA-seq, RFX2 Knock-down #2 (2x100 bp, paired-end)
  • ChIP-seq, RFX2-GFP (1x50 bp, single-end)
  • ChIP-seq, Control GFP (1x50 bp, single-end)

Genomic resource

Processed data

  • SuppTable2.RFX2_rnaseq_chip.2012oct.xls : Direct target of RFX2 identified in this study (genes differentially expressed under Rfx2 knock-down + Rfx2 ChIP-seq peaks).
  • DAVID6.7_RFX2_DirectDEdown_HGNC.xls : Functional modules enriched in genes down-regulated under Rfx2 knockdown + Rfx2 ChIP-seq peaks. (using DAVID 6.7)
  • DAVID6.7_RFX2_DirectDEup_HGNC.xls : Functional modules enriched in genes up-regulated under Rfx2 knockdown + Rfx2 ChIP-seq peaks. (using DAVID 6.7)

Videos

  • Video S1. Dynamics of GFP-IFT20 in a control multiciliated cell.
  • Video S2. Dynamics of GFP-IFT20 in a Ttc29-knockdown multiciliated cell.
  • Video S3. Cilia beating of a control multiciliated cell.
  • Video S4. Cilia beating of a Ribc2-knockdown multiciliated cell.
  • Video S5. The development of a control multiciliated cell.
  • Video S6. The insertion of a control multiciliated cell into the overlying
  • Video S7. The insertion of a Rfx2-knockdown multiciliated cell into the