Difference between revisions of "MStoolbox"

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(Created page with "== Before you start == For using MSblender, you need to run multiple search engines. == Repository == * https://github.com/marcottelab/MS-toolbox == Crux == * http://noble...")
 
(X!Tandem)
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== X!Tandem ==
 
== X!Tandem ==
 +
=== DB setup ===
 +
* Setup database with the following command. You need to make 'combined' database (FASTA file) before this.
 +
$ /project/marcotte/ms/bin/fasta_pro.exe <your fasta file>
 +
 +
Here is an example.
 +
<pre>$ /project/marcotte/ms/bin/fasta_pro.exe UPS_combined.fa
 +
fasta_pro file conversion utility, v. 2006.09.15
 +
input path = UPS_combined.fa
 +
output path = UPS_combined.fa.pro
 +
db type = plain
 +
taejoon@ada:~/project/ups2/DB$</pre>
  
 
== InsPecT ==
 
== InsPecT ==

Revision as of 15:24, 27 June 2012

Contents

Before you start

For using MSblender, you need to run multiple search engines.

Repository

Crux

Tide

MS-GFDB

X!Tandem

DB setup

  • Setup database with the following command. You need to make 'combined' database (FASTA file) before this.
$ /project/marcotte/ms/bin/fasta_pro.exe <your fasta file>

Here is an example.

$ /project/marcotte/ms/bin/fasta_pro.exe UPS_combined.fa 
fasta_pro file conversion utility, v. 2006.09.15
 input path = UPS_combined.fa
output path = UPS_combined.fa.pro
db type = plain
taejoon@ada:~/project/ups2/DB$

InsPecT

OMSSA

MaxQuant