Difference between revisions of "PSEAE CF.2010"

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== Supplement Data ==
 
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* Microarray RAW data (NCBI GEO): http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21966
 
  
 
== Supplement Tables ==
 
== Supplement Tables ==
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* Table S8. Functional enrichment data for Table S7
 
* Table S8. Functional enrichment data for Table S7
 
* Table S9. Functional enrichment data for Table S6
 
* Table S9. Functional enrichment data for Table S6
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== Microarray Data ==
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=== CEL files ===
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** http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/GSE21966_CEL.zip
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** You can also download it from http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21966 (NCBI GEO)
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=== Gzipped TXT files ===
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* http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.raw.txt.gz (RAW data, before pre-processing)
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* http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.corrected.txt.gz (RMA pre-processing, PM corrected)
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* http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.norm.txt.gz (RMA pre-processing, Quantile normalized)
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* http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.eset_rma.txt.gz (RMA pre-processing, ExpressSet)
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* http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.eset_mas5.txt.gz (MAS5 pre-processing, ExpressSet)
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* http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/Huse2010_GSE21966.calls_mas5.txt.gz (MAS5 pre-processing, P/M/A calls)
  
 
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[[Category:Publication]]
 
[[Category:Publication]]

Revision as of 13:55, 8 September 2010

Web supplement for 'Huse HK, Kwon T, Zlosnik JEA, Speert DP, Marcotte EM, Whiteley M, Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo, mBIO, :in press (2010) PubMed '

Contents

Supplement Tables

  • Table S1. Strains
  • Table S2. P. aeruginosa orthologs
  • Table S3. Affymetrix microarray annotation
  • Table S4. P. aeruginosa annotation
  • Table S5. Differentially expressed genes between progenitors
  • Table S6. Differentially expressed genes within isogenic groups (compared to each progenitor/first strain).
  • Table S7. Differentially expressed genes between isogenic groups.
  • Table S8. Functional enrichment data for Table S7
  • Table S9. Functional enrichment data for Table S6

Microarray Data

CEL files

Gzipped TXT files

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