User contributions
From Marcotte Lab
(Latest | Earliest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)
- 12:13, 31 August 2011 (diff | hist) . . (+322) . . Xenopus reference (→v1. RefSeq of cDNA & protein)
- 12:04, 31 August 2011 (diff | hist) . . (+4) . . Xenopus reference (→v1. RefSeq of cDNA & protein)
- 12:03, 31 August 2011 (diff | hist) . . (+394) . . Xenopus reference
- 11:52, 31 August 2011 (diff | hist) . . (+33) . . N Xenopus reference (Created page with " ---- Category:XenopusGenome")
- 11:51, 31 August 2011 (diff | hist) . . (+24) . . Xenopus Genome Project (→Howto)
- 16:21, 21 June 2011 (diff | hist) . . (+287) . . TXGP Data Description
- 15:40, 21 June 2011 (diff | hist) . . (+22) . . TXGP Data Description (→TXGP_ENGPU_RNA_SA11022 (SOLiDv3))
- 13:21, 21 June 2011 (diff | hist) . . (+16) . . TXGP Data Description (→TXGP_XENLA_WG1500_SA10026 (SOLiDv3))
- 13:20, 21 June 2011 (diff | hist) . . (+322) . . TXGP Data Description (→TXGP_XENLA_WG1500_SA10026 (SOLiDv3))
- 13:13, 21 June 2011 (diff | hist) . . (+12) . . TXGP Data Description (→Amin2011_XENLA_RNA_UNC (Illumina HiSeq))
- 13:12, 21 June 2011 (diff | hist) . . (+74) . . TXGP Data Description (→TXGP_ENGPU_RNA_SA11022 (SOLiDv3))
- 13:10, 21 June 2011 (diff | hist) . . (+16) . . TXGP Data Description (→Amin2011_XENLA_RNA_UNC (Illumina HiSeq))
- 13:09, 21 June 2011 (diff | hist) . . (+729) . . TXGP Data Description
- 12:54, 21 June 2011 (diff | hist) . . (+48) . . TXGP Data Description (→TXGP_XENLA_RNA_SA11024)
- 04:23, 18 June 2011 (diff | hist) . . (0) . . TXGP Data Description (→TXGP_XENLA_RNA_SA11024)
- 04:22, 18 June 2011 (diff | hist) . . (+598) . . TXGP Data Description
- 17:50, 16 June 2011 (diff | hist) . . (+96) . . TXGP RNAseq analysis (→Database)
- 16:37, 15 June 2011 (diff | hist) . . (-19) . . MediaWiki:Sidebar
- 16:37, 15 June 2011 (diff | hist) . . (+6) . . MediaWiki:Sidebar
- 16:37, 15 June 2011 (diff | hist) . . (+13) . . MediaWiki:Sidebar
- 15:05, 15 June 2011 (diff | hist) . . (+706) . . TXGP RNAseq analysis
- 10:32, 15 June 2011 (diff | hist) . . (+96) . . MSblender
- 10:25, 15 June 2011 (diff | hist) . . (+5) . . MSblender (→Prerequisites)
- 14:26, 14 June 2011 (diff | hist) . . (-12) . . TXGP RNAseq analysis (→Scripts for BFAST)
- 14:23, 14 June 2011 (diff | hist) . . (+547) . . TXGP RNAseq analysis (→Scripts)
- 14:19, 14 June 2011 (diff | hist) . . (+47) . . TXGP RNAseq analysis (→Scripts)
- 14:17, 14 June 2011 (diff | hist) . . (+582) . . N TXGP RNAseq analysis (Created page with " == Scripts == * run-bfast-match.sh <pre>#!/bin/bash FASTA=$1 if -f $FASTA ; then echo "File:",$FASTA for FASTQ in $(ls ../fastq/*.fastq.gz) do BASENAME=$(basenam...")
- 12:20, 14 June 2011 (diff | hist) . . (+30) . . TXGP Data Description (→TXGP_XENLA_RNA_SA11022)
- 12:19, 14 June 2011 (diff | hist) . . (+1) . . TXGP Data Description (→Naming convention)
- 12:12, 14 June 2011 (diff | hist) . . (+523) . . TXGP Data Description
- 12:05, 14 June 2011 (diff | hist) . . (+34) . . N TXGP Data Description (Created page with " ---- [[Category::XenopusGenome]]")
- 12:04, 14 June 2011 (diff | hist) . . (-1) . . Xenopus Genome Project (→Howto)
- 12:04, 14 June 2011 (diff | hist) . . (+29) . . Xenopus Genome Project (→Howto)
- 18:00, 13 June 2011 (diff | hist) . . (+39) . . Xenopus Genome Project
- 02:54, 25 April 2011 (diff | hist) . . (-56) . . CH391L (→From TA)
- 12:14, 24 April 2011 (diff | hist) . . (+150) . . CH391L (→From TA)
- 12:12, 24 April 2011 (diff | hist) . . (+25) . . CH391L (→From TA)
- 23:24, 19 April 2011 (diff | hist) . . (+34) . . Xenopus Genome Project
- 23:23, 19 April 2011 (diff | hist) . . (+296) . . Xenopus Genome Project
- 06:56, 9 April 2011 (diff | hist) . . (+415) . . CH391L (→Lectures & Handouts)
- 13:46, 5 April 2011 (diff | hist) . . (+180) . . CH391L (→Lectures & Handouts)
- 16:43, 28 March 2011 (diff | hist) . . (+199) . . CH391L/UTpond (top)
- 16:42, 28 March 2011 (diff | hist) . . (+387) . . CH391L/UTpond (→Databases)
- 16:32, 28 March 2011 (diff | hist) . . (+96) . . CH391L/UTpond (→Number of reads)
- 09:41, 25 March 2011 (diff | hist) . . (+7) . . CH391L/UTpond (→Analysis tool)
- 09:41, 25 March 2011 (diff | hist) . . (+4) . . CH391L/UTpond (→Analysis tool)
- 09:40, 25 March 2011 (diff | hist) . . (+231) . . CH391L/UTpond (→Analysis tool)
- 09:39, 25 March 2011 (diff | hist) . . (+486) . . CH391L/UTpond
- 09:33, 25 March 2011 (diff | hist) . . (+386) . . N CH391L/UTpond (Created page with "== Number of reads == * V3BC21: 213,419 (F3), 199,158 (F5), 223,100 (raw) * V3BC22: 634,431 (F3), 595,251 (F5), 661,120 (raw) * V3BC23: 1,015,471 (F3), 951,357 (F5), 1,06...")
- 09:11, 25 March 2011 (diff | hist) . . (+43) . . CH391L (→From TA)
- 13:08, 24 March 2011 (diff | hist) . . (0) . . CH391L (→Lectures & Handouts)
- 11:57, 8 March 2011 (diff | hist) . . (+297) . . CH391L (→Lectures & Handouts)
- 17:07, 20 February 2011 (diff | hist) . . (+205) . . CH391L/HiddenMarkovModel (→Viterbi Algorithm) (top)
- 17:04, 20 February 2011 (diff | hist) . . (+1,075) . . CH391L/HiddenMarkovModel (→Viterbi Algorithm)
- 00:54, 20 February 2011 (diff | hist) . . (-20) . . CH391L/HiddenMarkovModel (→Viterbi Algorithm)
- 00:51, 20 February 2011 (diff | hist) . . (+1,172) . . CH391L/HiddenMarkovModel (→Viterbi Algorithm)
- 00:03, 20 February 2011 (diff | hist) . . (-6) . . CH391L/HiddenMarkovModel (→Viterbi Algorithm)
- 23:45, 19 February 2011 (diff | hist) . . (+18) . . CH391L/HiddenMarkovModel
- 23:35, 19 February 2011 (diff | hist) . . (+21) . . CH391L/Connecting Server (→Windows) (top)
- 11:39, 19 February 2011 (diff | hist) . . (+21) . . CH391L/HiddenMarkovModel
- 11:28, 19 February 2011 (diff | hist) . . (-2) . . CH391L/HiddenMarkovModel
- 11:27, 19 February 2011 (diff | hist) . . (+2) . . CH391L/HiddenMarkovModel
- 11:26, 19 February 2011 (diff | hist) . . (+256) . . CH391L/HiddenMarkovModel
- 11:25, 19 February 2011 (diff | hist) . . (-1) . . CH391L/HiddenMarkovModel (→Viterbi Algorithm)
- 11:16, 19 February 2011 (diff | hist) . . (+559) . . N CH391L/HiddenMarkovModel (Created page with "== Viterbi Algorithm == This is an 'dishonest casino' example from Durbin, et al. 'Biological Sequence Analysis' book. A casino used two types of dice: one is a 'fair' one that h...")
- 10:51, 19 February 2011 (diff | hist) . . (+78) . . CH391L (→From TA)
- 11:50, 15 February 2011 (diff | hist) . . (-81) . . CH391L (→Lectures & Handouts)
- 21:44, 9 February 2011 (diff | hist) . . (+1,113) . . CH391L/BLOSUM (→Comments) (top)
- 16:21, 9 February 2011 (diff | hist) . . (+321) . . N CH391L/BLOSUM (Created page with "== Source Code == * http://www.marcottelab.org/users/CH391L/FromTA/BLOSUM.pl.txt * You also need BLOSUM50.txt file to run this script: http://www.marcottelab.org/users/CH391L/Fro...")
- 16:08, 9 February 2011 (diff | hist) . . (+1) . . CH391L/NucleotideFrequency (→Comments) (top)
- 15:50, 9 February 2011 (diff | hist) . . (+1,582) . . CH391L/NucleotideFrequency
- 15:26, 9 February 2011 (diff | hist) . . (+190) . . N CH391L/NucleotideFrequency (Created page with "== Source Code == * http://www.marcottelab.org/users/CH391L/FromTA/nfreq.pl.txt == How it works == http://www.marcottelab.org/users/CH391L/FromTA/nfreq_output.jpg ---- [[Categ...")
- 15:07, 9 February 2011 (diff | hist) . . (+260) . . CH391L (→From TA)
- 15:00, 9 February 2011 (diff | hist) . . (+28) . . CH391L
- 14:51, 30 January 2011 (diff | hist) . . (0) . . MSblender
- 14:47, 30 January 2011 (diff | hist) . . (+276) . . MSblender (→Prerequisites)
- 14:43, 30 January 2011 (diff | hist) . . (+831) . . MSblender (→Multivariate Modeling)
- 14:37, 30 January 2011 (diff | hist) . . (+2,800) . . MSblender (→How to use)
- 14:20, 30 January 2011 (diff | hist) . . (+96) . . MSblender (→Pre-processing)
- 14:19, 30 January 2011 (diff | hist) . . (+150) . . MSblender (→Pre-processing)
- 14:18, 30 January 2011 (diff | hist) . . (-236) . . MSblender (→Pre-processing)
- 14:15, 30 January 2011 (diff | hist) . . (+835) . . MSblender (→Pre-processing)
- 13:32, 30 January 2011 (diff | hist) . . (+21) . . MSblender (→Pre-processing)
- 13:31, 30 January 2011 (diff | hist) . . (0) . . MSblender (→Pre-processing)
- 13:30, 30 January 2011 (diff | hist) . . (+198) . . MSblender (→Pre-processing)
- 13:24, 30 January 2011 (diff | hist) . . (+842) . . MSblender (→How to use)
- 13:03, 30 January 2011 (diff | hist) . . (+7) . . MSblender (→See also)
- 12:32, 30 January 2011 (diff | hist) . . (+2) . . MSblender (→Prerequisites)
- 12:31, 30 January 2011 (diff | hist) . . (-1) . . MSblender (→Prerequisites)
- 12:31, 30 January 2011 (diff | hist) . . (+5) . . MSblender
- 12:30, 30 January 2011 (diff | hist) . . (0) . . MSblender (→Authors)
- 12:18, 30 January 2011 (diff | hist) . . (+2) . . MSblender (→Authors)
- 12:17, 30 January 2011 (diff | hist) . . (-1) . . MSblender (→Prerequisites)
- 12:16, 30 January 2011 (diff | hist) . . (+1,183) . . MSblender (→Installation)
- 11:52, 30 January 2011 (diff | hist) . . (+499) . . MSblender
- 11:45, 30 January 2011 (diff | hist) . . (+23) . . MediaWiki:Sidebar
- 15:51, 27 January 2011 (diff | hist) . . (+16) . . CH391L (→Lectures & Handouts)
- 15:51, 27 January 2011 (diff | hist) . . (+225) . . CH391L (→Lectures & Handouts)
- 15:22, 27 January 2011 (diff | hist) . . (-225) . . CH391L (→Lectures & Handouts)
- 15:19, 27 January 2011 (diff | hist) . . (+225) . . CH391L (→Lectures & Handouts)
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