Difference between revisions of "TXGP RNAseq assembly"

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(Dataset for RNA-seq assembly)
(Dataset for RNA-seq assembly)
Line 6: Line 6:
 
!Samples
 
!Samples
 
!Reads
 
!Reads
!Assembled transcripts(raw)
+
!Assembled Tx(raw)
 
!''X. laevis'' genes
 
!''X. laevis'' genes
 
!''X. tropicalis'' genes
 
!''X. tropicalis'' genes
Line 15: Line 15:
 
|Nirav Amin, Frank Conlon (UNC)
 
|Nirav Amin, Frank Conlon (UNC)
 
|2 <br/>(no rep)
 
|2 <br/>(no rep)
|28~33M <br/>(75bp, single)
+
|~30M  per sample<br/> (75bp, single) <br/> 61M total
 
|591,321
 
|591,321
 
|13,523
 
|13,523

Revision as of 12:07, 15 March 2012

Dataset for RNA-seq assembly

Dataset Contributor Samples Reads Assembled Tx(raw) X. laevis genes X. tropicalis genes H. sapiens genes
Amin201106_XENLA Nirav Amin, Frank Conlon (UNC) 2
(no rep)
~30M per sample
(75bp, single)
61M total
591,321 13,523 10,225 11,540
Park201106_XENLA Tae Joo Park, Richard Harland (UC Berkeley) 5
(no rep)
.. .. .. .. ..
TXGP201107_XENLA TXGP 2
(1x2 rep)
.. .. .. .. ..
Chung201110_XENLA Meii Chung, John Wallingford (UT Austin) 4
(2x2 rep)
.. .. .. .. ..
Quigley201112_XENLA Ian Quigley, Christopher R. Kintner (Salk Institute) 9
(unknown rep)
.. .. .. .. ..
Jarikji201201_XENLA Zeina Jarikji, Marko Horb (MBL) 15
(5x3 rep)
.. .. .. .. ..
TeperekTkacz201202_XENLA Marta Teperek-Tkacz, John Gurdon (Gurdon Institute) 1
(no rep)
.. .. .. .. ..