Revision as of 12:03, 15 March 2012

Dataset for RNA-seq assembly

Dataset	Contributor	Samples	Reads	Assembled transcripts(raw)	X. laevis genes	X. tropicalis genes	H. sapiens genes
Amin201106_XENLA	Nirav Amin, Frank Conlon (UNC)	2 (no rep)	28~33M (75bp, single)	591,321	13,523	10,225	11,540
Park201106_XENLA	Tae Joo Park, Richard Harland (UC Berkeley)	5 (no rep)	..	..	..	..	..
TXGP201107_XENLA	TXGP	2 (1x2 rep)	..	..	..	..	..
Chung201110_XENLA	Meii Chung, John Wallingford (UT Austin)	4 (2x2 rep)	..	..	..	..	..
Quigley201112_XENLA	Ian Quigley, Christopher R. Kintner (Salk Institute)	9 (unknown rep)	..	..	..	..	..
Jarikji201201_XENLA	Zeina Jarikji, Marko Horb (MBL)	15 (5x3 rep)	..	..	..	..	..
TeperekTkacz201202_XENLA	Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge)	1 (no rep)	..	..	..	..	..

@@ Line 36: / Line 36: @@
 |TXGP201107_XENLA
 |TXGP
-|2 (1 x 2 rep)
+|2 <br/>(1x2 rep)
 |..
 |..
@@ Line 47: / Line 47: @@
 |Chung201110_XENLA
 |Meii Chung, John Wallingford (UT Austin)
-|4 (2 x 2 rep)
+|4 <br/>(2x2 rep)
 |..
 |..
@@ Line 58: / Line 58: @@
 |Quigley201112_XENLA
 |Ian Quigley, Christopher R. Kintner (Salk Institute)
-|9 (unknown rep)
+|9<br/>(unknown rep)
 |..
 |..
@@ Line 69: / Line 69: @@
 |Jarikji201201_XENLA
 |Zeina Jarikji, Marko Horb (MBL)
-|15 (5 x 3 rep)
+|15<br/>(5x3 rep)
 |..
 |..
@@ Line 80: / Line 80: @@
 |TeperekTkacz201202_XENLA
 |Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge)
-|1 (no rep)
+|1<br/>(no rep)
 |..
 |..