TXGP RNAseq assembly
From Marcotte Lab
Dataset for RNA-seq assembly
| Dataset | Contributor | Samples | Reads | Assembled transcripts(raw) | X. laevis genes | X. tropicalis genes | H. sapiens genes |
|---|---|---|---|---|---|---|---|
| Amin201106_XENLA | Nirav Amin, Frank Conlon (UNC) | 2 (no rep) | 28~33M (75bp, single) | 591,321 | 13,523 | 10,225 | 11,540 |
| Park201106_XENLA | Tae Joo Park, Richard Harland (UC Berkeley) | 5 (no rep) | .. | .. | .. | .. | .. |
| TXGP201107_XENLA | TXGP | 2 (1 x 2 rep) | .. | .. | .. | .. | .. |
| Chung201110_XENLA | Meii Chung, John Wallingford (UT Austin) | 4 (2 x 2 rep) | .. | .. | .. | .. | .. |
| Quigley201112_XENLA | Ian Quigley, Christopher R. Kintner (Salk Institute) | 9 (unknown rep) | .. | .. | .. | .. | .. |
| Jarikji201201_XENLA | Zeina Jarikji, Marko Horb (MBL) | 15 (5 x 3 rep) | .. | .. | .. | .. | .. |
| TeperekTkacz201202_XENLA | Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge) | 1 (no rep) | .. | .. | .. | .. | .. |
