TXGP ens63 reference
The goals of TXGP RNA-seq analysis is (1)to construct gene models in X. laevis, and (2) estimate their expression levels in different tissues. However, many de novo transcriptome assembly program generates 'false positive' transcript models. Also, because we do not have a genome sequence yet, it is hard to derive gene models from transcripts directly (esp. in allotetraploidy condition). So we are using [EnsEMBL] annotation as a reference of gene model construction.
Genes & Transcripts
= Clustering of transcripts to gene