Difference between revisions of "Texas Xenopus Genome Project/Species Identification"

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(Created page with '== How to select == * Download ''X. tropicalis'' mRNA sequences from XenBase (Nov. 27, 2009 version). ** xdata:ID/XENTR_mRNA.xenbase20091127.fasta.gz * Download CHORI-216 s...')
 
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== How to select ==
 
== How to select ==
 
* Download ''X. tropicalis'' mRNA sequences from XenBase (Nov. 27, 2009 version).  
 
* Download ''X. tropicalis'' mRNA sequences from XenBase (Nov. 27, 2009 version).  
** [[:xdata:ID/XENTR_mRNA.xenbase20091127.fasta.gz]]
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** [[:xdata:ID/XENTR_mRNA.xenbase20091127.fasta.gz]] 17 MB, gzipped.
 
* Download CHORI-216 sequences (from XenBase) and CHORI-219 sequences (from NCBI GenBank).  
 
* Download CHORI-216 sequences (from XenBase) and CHORI-219 sequences (from NCBI GenBank).  
** [[:xdata:ID/XENTR_CH216.fasta.gz]] (CHORI-216 sequences. 160 BAC sequences from ''X. tropicalis'' genome)
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** [[:xdata:ID/XENTR_CH216.fasta.gz]] 1.2 MB, gzipped. (CHORI-216 sequences. 160 BAC sequences from ''X. tropicalis'' genome)
** [[:xdata:ID/XENLA_CH219.fasta.gz]] (CHORI-219 sequences. 29 BAC sequences from ''X. laeves'' genome)
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** [[:xdata:ID/XENLA_CH219.fasta.gz]] 6.5 MB, gzipped. (CHORI-219 sequences. 29 BAC sequences from ''X. laeves'' genome)
 
* Run BLAT (with default option) to known CHORI BAC sequences.
 
* Run BLAT (with default option) to known CHORI BAC sequences.
** [[:xdata:ID/XENTR_mRNA.XENLA_CH219.blat_pslx.gz]]
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** [[:xdata:ID/XENTR_mRNA.XENLA_CH219.blat_pslx.gz]] 1.2 MB, gzipped.
** [[:xdata:XENTR_mRNA.XENTR_CH216.blat_pslx.gz]]
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** [[:xdata:XENTR_mRNA.XENTR_CH216.blat_pslx.gz]] 20 MB, gzipped.
  
 
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[[Category:XenopusGenome]]
 
[[Category:XenopusGenome]]

Revision as of 10:53, 9 December 2009

How to select