Texas Xenopus Genome Project/Species Identification

How to select

• Download X. tropicalis mRNA sequences from XenBase (Nov. 27, 2009 version).
  • xdata:ID/XENTR_mRNA.xenbase20091127.fasta.gz
• Download CHORI-216 sequences (from XenBase) and CHORI-219 sequences (from NCBI GenBank).
  • xdata:ID/XENTR_CH216.fasta.gz (CHORI-216 sequences. 160 BAC sequences from X. tropicalis genome)
  • xdata:ID/XENLA_CH219.fasta.gz (CHORI-219 sequences. 29 BAC sequences from X. laeves genome)
• Run BLAT (with default option) to known CHORI BAC sequences.
  • xdata:ID/XENTR_mRNA.XENLA_CH219.blat_pslx.gz
  • xdata:XENTR_mRNA.XENTR_CH216.blat_pslx.gz

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