User:TaejoonKwon

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Contents

Education

  • PhD in Cellular and Molecular Biology, University of Texas at Austin, USA (2012)
  • MPhil in Computational Biology, Cambridge University, UK (2006)
  • MS in Chemical Engineering, Seoul National University, Republic of Korea (2000)
  • BS in Chemical Engineering, Seoul National University, Republic of Korea (1998)


Publications

  1. Kwon T, Huse HK, Vogel C, Whiteley M, Marcotte EM (2014) Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains. Journal of Proteome Research, in press Link
  2. Chung M-I*, Kwon T*, Gupta R, Baker JC, Marcotte EM, Wallingford JB (2014) Coordinated genomic control of ciliogenesis and cell movement by Rfx2. eLife, 3:e01439 PubMed:24424412
  3. Gerster S, Kwon T, Ludwig C, Matondo M, Vogel C, Marcotte EM, Aebersold R, Bühlmann P (2013) Statistical approach to protein quantification. Mol. Cell. Proteomics, 13(2):666-77 PubMed:24255132
  4. Huse HK, Kwon T, Zlosnik JEA, Speert DP, Marcotte EM, Whiteley M (2013) An evolutionary approach to identify adaptive traits in a chronic pathogen. PLoS ONE, 8(12): e82621 PubMed:24324811
  5. Woods S*, Coghlan A*, Rivers D*, Warnecke T*, Jeffries SJ, Kwon T, Rogers A, Hurst LD, Ahringer J (2013). Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses. PLoS Genetics 9(5):e1003330 PubMed:23675306
  6. Wessel AK, Liew J, Kwon T, Marcotte EM, Whiteley M (2013). The role of Pseudomonas aeruginosa peptidoglycan-associated outer membrane proteins in vesicle biogenesis. Journal of Bacteriology 195(2):213-219. PubMed:23123904
  7. Uribe RA, Kwon T, Marcotte EM, Gross JM (2012). Id2a functions to limit Notch pathway activity and thereby influence retinoblast proliferation to differentiation during zebrafish retinogenesis. Developmental Biology 371(2):280-292. PubMed:22981606
  8. Kwon T*, Choi H*, Vogel C, Nesvizhskii AI, Marcotte EM (2011). MSblender: a probabilistic approach for integrating peptide identifications from multiple database search engines. Journal of Proteome Research 10(7):2949-58. PubMed:21488652
  9. Huse HK*, Kwon T*, Zlosnik JEA, Speert DP, Marcotte EM, Whiteley M (2010). Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo. mBio 1(4):e00199-10 PubMed:20856824 (Covered by Science News, Oct. 2010 | mBio ‘Our Most Read Paper’ of May 2012.)
  10. Laurent J*, Vogel C*, Kwon T, Craig SA, Boutz DR, Huse HK, Nozue K, Walia H, Whiteley M, Ronald PC, Marcotte EM (2010). Protein abundances are more conserved than mRNA abundances across diverse taxa. Proteomics 10(23):4209-12. PubMed:21089048
  11. Ramakrishnan SR, Vogel C, Kwon T, Penalva LO, Marcotte EM, Miranker DP (2009). Mining gene functional networks to improve mass-spectrometry based protein identification. Bioinformatics 25(22):2955-2961. PubMed: 1963309

Patents

International

  1. Kwon T, Method of designing probe sets, microarray having substrate on which probe designed by the method is immobilized, and computer readable medium on which program for executing the method is recorded (US7657381/EP1634959 B1)
  2. Kwon T, Lee K-S, Oh J-Y, Method of designing primer and probe sets, primer and probe set designed by the method, kit comprising the sets, computer readable medium recorded thereon program to execute the method, and method of identifying target sequence using the sets (US7657382)

Domestic (Korean)

  1. Kwon T, System for designing probe array using heterogeneous genomic information and method of the same (GN 1005060890000)
  2. Kwon T, Method for designing a probe set, a microarray having a substrate immobilized thereon a probe designed by the method and a computer readable medium recorded thereon a program to execute the method (GN 1006828910000)
  3. Kwon T, A microarray having microarray identification information stored in the form of a spot, method of producing the microarray and method of using the microarray (GN 1006244200000)
  4. Kwon T, Lee K-S, Oh J-Y, Method for designing primer and probe set, primer and probe set designed by the method, kit comprising the set, computer readable medium recorded thereon a program to execute the method, and method for identifying target sequence using the set (GN 1011388640000)
  5. Oh J-Y, Lee K-S, Kwon T, Method for designing probe set, probe set designed by the method, microarray comprising the probe set, and method for identifying target sequence using the probe set (GN 1007457630000)