Difference between revisions of "XENLA Genome"

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(Genome version)
(Genome version)
Line 27: Line 27:
 
|JGIv6a
 
|JGIv6a
 
|2010 oct
 
|2010 oct
|-
 
|JGIv7a
 
|2012 Mar.
 
|-
 
|JGIv7b
 
|2012 May
 
 
|-
 
|-
 
|NIGv1
 
|NIGv1
|2011 Nov
+
|2012 Nov
 
|-
 
|-
 
|NIGv1ap
 
|NIGv1ap
|2011 Nov
+
|2012 Nov
 
|-
 
|-
 
|NIGv1m
 
|NIGv1m
|2011 Nov.
+
|2012 Nov.
 
|-
 
|-
 
|NIGv2
 
|NIGv2
|2012
+
|2013 Feb.
 
|-
 
|-
 
|NIGv2c
 
|NIGv2c
|2012
+
|2013 Feb.
 +
|-
 +
|JGIv7a
 +
|2013 Mar.
 +
|-
 +
|JGIv7b
 +
|2013 May
 
|}
 
|}
  

Revision as of 12:42, 8 May 2013

Contents

Genome browser

Genome version

Name Release Date Concat. Length (bp) N50 (bp) Scaffolds > 10kbp Remarks
JGIv1 2009
JGIv5 2009 Oct.
JGIv6 2010
JGIv6a 2010 oct
NIGv1 2012 Nov
NIGv1ap 2012 Nov
NIGv1m 2012 Nov.
NIGv2 2013 Feb.
NIGv2c 2013 Feb.
JGIv7a 2013 Mar.
JGIv7b 2013 May

Data Summary

Whole genome shotgun sequencing, JGI/UC Berkeley, USA

  • Illumina mate-pair

Whole genome shotgun sequencing, NIG/U Tokyo, Japan

  • Illumina mate-pair

Whole genome shotgun sequencing, UT Austin, USA

  • SOLiD mate-pair

BAC-end sequencing, NIG/U Tokyo, Japan

BAC full sequencing, NIG/U Tokyo, Japan

BAC shotgun sequencing, UT Austin, USA

FISH, NIG/U Tokyo, Japan