Difference between revisions of "XENLA Genome"

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(Genome version)
(Genome version)
Line 32: Line 32:
 
|JGIv6
 
|JGIv6
 
|2012 Jul.
 
|2012 Jul.
|
+
|2.75 Gbp
|
+
|0.70 Mbp
|
+
|8,426
 
|Officially released in XenBase.
 
|Officially released in XenBase.
 
|-
 
|-
 
|JGIv6a
 
|JGIv6a
 
|2012 Jul.
 
|2012 Jul.
|
+
|2.75 Gbp
|
+
|0.70 Mbp
|
+
|8,426
|Officially released in XenBase.
+
|Officially released in XenBase;<br/> Minor update of JGIv6.
 
|-
 
|-
 
|NIGv1
 
|NIGv1

Revision as of 13:15, 8 May 2013

Contents

Genome browser

Genome version

Name Release Date Concat. Length (bp) N50 (bp) Scaffolds > 10kbp Remarks
JGIv1 2010 Dec. 2.30 Gbp 8 kbp 385,933 Internal Use Only.
JGIv5 2011 Oct. 2.84 Gbp 0.28 Mbp 16,625 Released in Xenopus PI Meeting.
JGIv6 2012 Jul. 2.75 Gbp 0.70 Mbp 8,426 Officially released in XenBase.
JGIv6a 2012 Jul. 2.75 Gbp 0.70 Mbp 8,426 Officially released in XenBase;
Minor update of JGIv6.
NIGv1 2012 Nov. 2.88 Gbp 0.34 Mbp 14,260 Original name is 'xl.v1soap';
Internal Use Only.
NIGv1ap 2012 Nov. 3.27 Gbp 0.17 Mbp 39,283 Original name is 'xl.v3ap'(AllPath?);
Internal Use Only.
NIGv1m 2012 Nov. 2.84 Gbp 0.28 Mbp 82,132 Original name is 'xl.v5m';
Internal Use Only.
NIGv2 2013 Feb.
NIGv2c 2013 Feb.
JGIv7a 2013 Mar. 2.72 Gbp 1.15 Mbp 5,714 JGI7;Internal Use Only.
JGIv7b 2013 May 2.78 Gbp 3.49 Mbp 2,598 JGI7.2;Internal Use Only.

Data Summary

Whole genome shotgun sequencing, JGI/UC Berkeley, USA

  • Illumina mate-pair

Whole genome shotgun sequencing, NIG/U Tokyo, Japan

  • Illumina mate-pair

Whole genome shotgun sequencing, UT Austin, USA

  • SOLiD mate-pair

BAC-end sequencing, NIG/U Tokyo, Japan

BAC full sequencing, NIG/U Tokyo, Japan

BAC shotgun sequencing, UT Austin, USA

FISH, NIG/U Tokyo, Japan