XENLA Genome

From Marcotte Lab
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Contents

Genome browser

Genome version

Name Release Date Concat. Length (bp) N50 (bp) Scaffolds > 10kbp Remarks
JGIv1 2009
JGIv5 2009 Oct.
JGIv6 2010
JGIv6a 2010 oct
NIGv1 2012 Nov 2.88 Gbp 0.34 Mbp 14,260 Original name is 'xl.v1soap';
Internal Use Only.
NIGv1ap 2012 Nov 3.27 Gbp 0.17 Mbp 39,283 Original name is 'xl.v3ap'(AllPath?);
Internal Use Only.
NIGv1m 2012 Nov. 2.84 Gbp 0.28 Mbp 82,132 Original name is 'xl.v5m';
Internal Use Only.
NIGv2 2013 Feb.
NIGv2c 2013 Feb.
JGIv7a 2013 Mar. 2.72 Gbp 1.15 Mbp 5,714 JGI7;Internal Use Only
JGIv7b 2013 May 2.78 Gbp 3.49 Mbp 2,598 JGI7.2;Internal Use Only

Data Summary

Whole genome shotgun sequencing, JGI/UC Berkeley, USA

  • Illumina mate-pair

Whole genome shotgun sequencing, NIG/U Tokyo, Japan

  • Illumina mate-pair

Whole genome shotgun sequencing, UT Austin, USA

  • SOLiD mate-pair

BAC-end sequencing, NIG/U Tokyo, Japan

BAC full sequencing, NIG/U Tokyo, Japan

BAC shotgun sequencing, UT Austin, USA

FISH, NIG/U Tokyo, Japan