Difference between revisions of "Xenopus Genome Project Consortium"
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== ''X. laevis'' RNA-seq data == | == ''X. laevis'' RNA-seq data == | ||
* Amin201106 - Nirav Amin, Panna Tandon, Frank Conlon (University of North Carolina, Chapel Hill) | * Amin201106 - Nirav Amin, Panna Tandon, Frank Conlon (University of North Carolina, Chapel Hill) | ||
| − | * Audic201207 - Yann Audic | + | * Audic201207 - Yann Audic (Université de RENNES I, France) |
| − | * Blower201306 - Mike Blower | + | * Blower201306 - Mike Blower (Harvard Medical School) |
| − | * Chang201302 - Chenbei Chang | + | * Chang201302 - Chenbei Chang (University of Alabama at Birmingham) |
* Chung201110 - Mei-I Chung, John Wallingford (University of Texas at Austin) | * Chung201110 - Mei-I Chung, John Wallingford (University of Texas at Austin) | ||
* Horb201201 - Marko Horb (Marine Biological Laboratory) | * Horb201201 - Marko Horb (Marine Biological Laboratory) | ||
| − | * Ismailoglu201203 - Ismil Ismailoglu, Ali Brivanlov ( | + | * Ismailoglu201203 - Ismil Ismailoglu, Ali Brivanlov (Rockefeller University) |
* Kwon201107 - Taejoon Kwon, Mei-I Chung, John Wallingford, Edward Marcotte (University of Texas at Austin) | * Kwon201107 - Taejoon Kwon, Mei-I Chung, John Wallingford, Edward Marcotte (University of Texas at Austin) | ||
* Kwon201206 - Taejoon Kwon, Marta Teperek, Jerome Jullien, John Gurdon, Edward Marcotte (University of Texas at Austin; Gurdon Institute, UK) | * Kwon201206 - Taejoon Kwon, Marta Teperek, Jerome Jullien, John Gurdon, Edward Marcotte (University of Texas at Austin; Gurdon Institute, UK) | ||
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* TeperekTkacz201202, TeperekTkacz201205, TeperekTkacs201206 - Marta Teperek, Jerome Jullien, John Gurdon(Gurdon Institute, UK) | * TeperekTkacz201202, TeperekTkacz201205, TeperekTkacs201206 - Marta Teperek, Jerome Jullien, John Gurdon(Gurdon Institute, UK) | ||
* Ueno201210 - Naoto Ueno, Shuji Takahashi, Masanori Taira (University of Tokyo, Japan; National Institute for Basic Biology, Japan) | * Ueno201210 - Naoto Ueno, Shuji Takahashi, Masanori Taira (University of Tokyo, Japan; National Institute for Basic Biology, Japan) | ||
| − | * Veenstra201204 - Gert Veenstra | + | * Veenstra201204 - Gert Veenstra (Radboud University Nijmegen, The Netherlands) |
== Other ''Xenopus'' RNA-seq data == | == Other ''Xenopus'' RNA-seq data == | ||
Revision as of 11:32, 10 January 2014
Contents |
Core member
University of California, Berkeley & Joint Genome Institute (JGI)
Role: Genome sequencing & assembly, gene annotation and other computational analysis
- Richard M. Harland
- Daniel S. Rokhsar
- Adam Session
- Jarrod Chapman
University of Tokyo, Japan
Role: Large-scale J-strain RNA-seq, BAC sequencing, FISH, validation of gene annotation
- Masanori Taira
- Shuji Takahashi
- Mariko Kondo
University of Texas, Austin
Role: Gene annotation, RNA-seq/ChIP-seq analysis, shotgun proteomics analysis, and other computational analysis.
- Edward M. Marcotte
- John B. Wallingford
- Taejoon Kwon
Data contributors
X. laevis RNA-seq data
- Amin201106 - Nirav Amin, Panna Tandon, Frank Conlon (University of North Carolina, Chapel Hill)
- Audic201207 - Yann Audic (Université de RENNES I, France)
- Blower201306 - Mike Blower (Harvard Medical School)
- Chang201302 - Chenbei Chang (University of Alabama at Birmingham)
- Chung201110 - Mei-I Chung, John Wallingford (University of Texas at Austin)
- Horb201201 - Marko Horb (Marine Biological Laboratory)
- Ismailoglu201203 - Ismil Ismailoglu, Ali Brivanlov (Rockefeller University)
- Kwon201107 - Taejoon Kwon, Mei-I Chung, John Wallingford, Edward Marcotte (University of Texas at Austin)
- Kwon201206 - Taejoon Kwon, Marta Teperek, Jerome Jullien, John Gurdon, Edward Marcotte (University of Texas at Austin; Gurdon Institute, UK)
- Quigley201112, Quigley201207, Quigley201212, Quigley201307 - Ian Quigley, Christopher Kintner (Salk Institute)
- Taira201203 - Masanori Taira, Shuji Takahashi (University of Tokyo, Japan)
- TeperekTkacz201202, TeperekTkacz201205, TeperekTkacs201206 - Marta Teperek, Jerome Jullien, John Gurdon(Gurdon Institute, UK)
- Ueno201210 - Naoto Ueno, Shuji Takahashi, Masanori Taira (University of Tokyo, Japan; National Institute for Basic Biology, Japan)
- Veenstra201204 - Gert Veenstra (Radboud University Nijmegen, The Netherlands)
Other Xenopus RNA-seq data
- Evans201309 - X. paratropicalis Ben Evans (McMaster Univeristy, Canada)
- Gall201301 - X. tropicalis Joseph Gall
- Tan201204 - X. tropicalis Meng How Tan, Billy Li (Stanford Univeristy)
X. laevis ChIP-seq data
- Chung201208 - Mei-I Chung, Rakhi Gupta, Julie Baker, John Wallingford (University of Texas at Austin; Stanford University)
- Gupta201202 - Rakhi Gupta, Julie Baker (Stanford University)
- Quigley201306 - Ian Quigley, Christopher Kintner (Salk Institute)
- TeperekTkacz201306 - Marta Teperek, Jerome Jullien, John Gurdon(Gurdon Institute, UK)
