Total Overlap F3 F5 Target 83 1 65 18 Cyanophora_paradoxa_cyanelle,|U30821.1 55 2 37 18 Euglena_gracilis_chloroplast|X70810.2 61 2 41 20 Bryopsis_hypnoides_chloroplast,|GQ892829.1 43 1 36 7 Moschus_berezovskii_mitochondrion,|EU043465.1 48 2 39 9 Sousa_chinensis_mitochondrion,|EU557091.1 43 2 36 7 Orcaella_heinsohni_isolate|JF339977.1 47 2 38 9 Tursiops_truncatus_mitochondrion,|EU557093.1 47 2 37 10 Globicephala_macrorhynchus_mitochondrion,|HM060333.1 47 2 38 9 Pseudorca_crassidens_mitochondrion,|HM060332.1 48 2 39 9 Stenella_coeruleoalba_mitochondrion,|EU557097.1 39 2 31 8 Monodon_monoceros_complete|AJ554062.1 48 2 37 11 Grampus_griseus_mitochondrion,|EU557095.1 48 2 39 9 Stenella_attenuata_mitochondrion,|EU557096.1 48 2 38 10 Globicephala_melas_mitochondrion,|HM060334.1 46 2 37 9 Tursiops_aduncus_mitochondrion,|EU557092.1 48 2 38 10 Globicephala_melas_isolate|JF339972.1 47 2 37 10 Globicephala_macrorhynchus_isolate|JF339976.1 54 3 44 10 Delphinus_capensis_mitochondrion,|EU557094.1 54 2 47 7 Capra_ibex_mitochondrion,|FJ207526.1 46 2 34 12 Talpa_europaea_complete|Y19192.1 53 2 47 6 Bison_bison_isolate|GU946986.1 53 2 47 6 Bison_bison_isolate|GU946990.1 53 2 47 6 Bison_bison_isolate|GU946982.1 53 2 47 6 Bison_bison_isolate|GU946978.1 53 2 47 6 Bison_bison_isolate|GU946984.1 53 2 47 6 Bison_bison_isolate|GU946980.1 53 2 47 6 Bison_bison_isolate|GU946995.1 53 2 45 8 Phocoena_phocoena_complete|AJ554063.1 45 2 37 8 Oreamnos_americanus_mitochondrion,|FJ207535.1 53 2 47 6 Bison_bison_isolate|GU946981.1 53 2 47 6 Bison_bison_isolate|GU946983.1 53 2 47 6 Bison_bison_isolate|GU946989.1 53 2 47 6 Bison_bison_isolate|GU946987.1 53 2 47 6 Bison_bison_isolate|GU946985.1 53 2 47 6 Bison_bison_isolate|GU946991.1 53 2 47 6 Bison_bison_isolate|GU946977.1 53 2 47 6 Bison_bison_mitochondrion,|EU177871.1 53 2 47 6 Bison_bison_isolate|GU946979.1 52 2 44 8 Moschus_moschiferus_mitochondrion,|FJ469675.1 9 2 6 3 Gallid_herpesvirus_2|AY510475.1 48 1 40 8 Martes_pennanti_haplotype|GU121231.1 26 1 21 5 Ursus_arctos_mitochondrion,|AF303110.1 20 1 17 3 Ursus_thibetanus_mitochondrion,|EF196661.1 31 1 25 6 Phoca_vitulina_mitochondrial|X63726.1 24 1 19 5 Rattus_norvegicus_mitochondrial|X14848.1 48 1 40 8 Martes_pennanti_haplotype|GU121232.1 24 1 20 4 Ursus_maritimus_mitochondrion,|AF303111.1 49 1 39 10 Martes_pennanti_haplotype|GU121230.1 48 1 40 8 Martes_pennanti_haplotype|GU121236.1 48 1 40 8 Martes_pennanti_haplotype|GU121234.1 48 1 40 8 Martes_pennanti_haplotype|GU121235.1 20 1 17 3 Ursus_thibetanus_ussuricus|EF681884.1 43 1 36 7 Martes_flavigula_mitochondrion,|FJ719367.1 25 1 22 3 Helarctos_malayanus_mitochondrion,|EF196664.1 18 1 15 3 Ursus_thibetanus_formosanus|EF076773.1 26 1 21 5 Eumetopias_jubatus_complete|AJ428578.2 38 1 32 6 Erignathus_barbatus_complete|AM181027.1 48 1 40 8 Martes_pennanti_haplotype|GU121228.1 36 1 31 5 Arctocephalus_forsteri_mitochondrion,|AF513820.1 20 1 17 3 Ursus_thibetanus_mupinensis|DQ402478.1 26 1 22 4 Ursus_americanus_mitochondrion,|AF303109.1 15 1 13 2 Ursus_thibetanus_thibetanus|EF587265.1 34 1 28 6 Phoca_largha_complete|AM181031.1 48 1 40 8 Martes_pennanti_haplotype|GU121237.1 48 1 40 8 Martes_pennanti_haplotype|GU121233.1 47 1 39 8 Martes_pennanti_haplotype|GU121229.1 46 2 36 10 Enhydra_lutris_mitochondrial|AB291077.1 45 3 36 9 Lutra_lutra_mitochondrion,|FJ236015.1 46 2 39 7 Ammotragus_lervia_mitochondrion,|EF466060.1 47 3 41 6 Jaculus_jaculus_complete|AJ416890.1 41 2 35 6 Lobodon_carcinophaga_complete|AM181024.1 53 2 35 18 Leptonychotes_weddellii_complete|AM181025.1 46 1 35 11 Daubentonia_madagascariensis_complete|AM905039.1 43 1 36 7 Diceros_bicornis_mitochondrion,|FJ905814.1 55 2 45 10 Ceratotherium_simum_complete|Y07726.1 45 2 35 10 Orcinus_orca_isolate|HQ405752.1 56 3 42 14 Berardius_bairdii_complete|AJ554057.1 52 2 43 9 Lagenorhynchus_albirostris_complete|AJ554061.1 3 1 2 1 Beauveria_bassiana_mitochondrion,|EU371503.2 2 1 1 1 Hypocrea_jecorina_mitochondrion,|AF447590.1 3 1 2 1 Gibberella_zeae_mitochondrion,|DQ364632.1 3 1 2 1 Cordyceps_bassiana_isolate|EU100742.1 2 1 1 1 Metarhizium_anisopliae_strain|AY884128.1 3 1 2 1 Fusarium_oxysporum_strain|AY945289.1 3 1 2 1 Verticillium_dahliae_mitochondrion,|DQ351941.1 2 1 1 1 Lecanicillium_muscarium,_complete|AF487277.1 2 1 1 1 Cordyceps_brongniartii_isolate|EU100743.1 58 1 47 11 Chara_vulgaris_mitochondrion,|AY267353.1 45 1 39 6 Capra_sibirica_mitochondrion,|FJ207529.1 47 1 38 9 Neofelis_nebulosa_mitochondrion,|DQ257669.1 43 1 38 5 Capra_nubiana_mitochondrion,|FJ207527.1 48 1 41 7 Cervus_nippon_centralis|AB211429.1 50 1 44 6 Hemitragus_jemlahicus_mitochondrion,|FJ207531.1 38 1 30 8 Rupicapra_pyrenaica_mitochondrion,|FJ207538.1 46 1 40 6 Capra_falconeri_mitochondrion,|FJ207525.1 49 1 42 7 Rhyncholestes_raphanurus_complete|AJ508399.1 61 2 53 8 Cervus_nippon_taiouanus|DQ985076.1 59 2 52 7 Cervus_elaphus_yarkandensis|GU457435.1 57 2 50 7 Cervus_elaphus_xanthopygus|GU457434.1 58 2 50 8 Cervus_nippon_yesoensis|AB210267.2 62 2 53 9 Cervus_eldi_mitochondrion,|HM138200.1 59 2 52 7 Cervus_elaphus_mitochondrial|AB245427.2 60 2 51 9 Mogera_wogura_mitochondrial|AB099482.1 59 2 51 8 Cervus_nippon_yakushimae|AB218689.1 61 2 50 11 Urotrichus_talpoides_mitochondrial|AB099483.1 38 2 34 4 Emmelichthys_struhsakeri_mitochondrial|AP004446.1 34 2 30 4 Hapalogenys_nigripinnis_mitochondrion,|HM754620.1 29 1 22 7 Xenopeltis_unicolor_mitochondrial|AB179620.1 27 1 21 6 Eurystomus_orientalis_mitochondrion,|EU344978.1 11 1 4 7 Boa_constrictor_mitochondrial|AB177354.1 8 1 2 6 Perionyx_excavatus_mitochondrion,|EF494507.1 22 1 16 6 Cylindrophis_ruffus_mitochondrial|AB179619.1 12 1 6 6 Tarentola_mauritanica_mitochondrion,|EU443255.1 52 1 40 12 Monsonia_speciosa_plastid,|HM125538.1 57 1 44 13 Erodium_carvifolium_chloroplast,|HQ713469.1 52 1 43 9 Gnetum_parvifolium_chloroplast|AP009569.1 55 1 46 9 Ephedra_equisetina_chloroplast|AP010819.1 59 1 47 12 Welwitschia_mirabilis_chloroplast,|EU342371.1 65 1 51 14 Geranium_palmatum_plastid,|HM125537.1 34 1 30 4 Pellona_flavipinnis_mitochondrial|AP009619.1 34 1 31 3 Ilisha_elongata_mitochondrial|AP009141.1 40 2 35 5 Takifugu_pardalis_mitochondrial|AP009528.1 42 2 37 5 Takifugu_xanthopterus_mitochondrial|AP009533.1 41 2 35 6 Takifugu_poecilonotus_mitochondrial|AP009539.1 41 2 36 5 Takifugu_ocellatus_mitochondrial|AP009536.1 47 2 42 5 Miichthys_miiuy_mitochondrion,|HM447240.1 41 2 35 6 Takifugu_exascurus_mitochondrial|AP009540.1 41 2 37 4 Ilisha_africana_mitochondrial|AP009140.1 40 2 35 5 Takifugu_stictonotus_mitochondrial|AP009530.1 40 2 35 5 Takifugu_vermicularis_mitochondrial|AP009532.1 42 2 37 5 Takifugu_niphobles_mitochondrial|AP009526.1 41 2 36 5 Takifugu_chrysops_mitochondrial|AP009525.1 41 2 36 5 Takifugu_snyderi_mitochondrial|AP009531.1 4 1 2 2 Aspergillus_oryzae_RIB40|AP007176.1 38 1 35 3 Takifugu_porphyreus_mitochondrial|AP009529.1 32 1 30 2 Coilia_lindmani_mitochondrial|AP011558.1 37 1 31 6 Channa_argus_mitochondrion,|GU937112.1 30 1 27 3 Cheilinus_undulatus_mitochondrion,|GU296101.1 25 1 22 3 Rhynchopelates_oxyrhynchus_mitochondrial|AP011064.1 32 1 29 3 Lethrinus_obsoletus_mitochondrial|AP009165.1 34 1 29 5 Arcos_sp._KU-149|AP004452.1 33 1 30 3 Carangoides_armatus_mitochondrial|AP004444.1 18 1 17 1 Muraenesox_bagio_mitochondrial|AP010852.1 26 1 23 3 Acheilognathus_intermedia_mitochondrion,|EF483933.1 17 1 16 1 Aeoliscus_strigatus_mitochondrial|AP009198.1 32 1 29 3 Cololabis_saira_mitochondrial|AP002932.1 25 1 22 3 Plestiodon_egregius_mitochondrial|AB016606.1 29 1 25 4 Pteragogus_flagellifer_mitochondrion,|EF409976.2 33 1 31 2 Hynobius_arisanensis_mitochondrion,|EF462213.1 33 1 26 7 Hypsiglena_jani_texana|EU728592.1 25 1 22 3 Chaetodontoplus_septentrionalis_mitochondrial|AP006007.1 17 1 15 2 Ditrema_temminckii_mitochondrial|AP009129.1 23 1 21 2 Galaxias_gollumoides_mitochondrion,|HM106487.1 38 1 35 3 Sufflamen_fraenatum_mitochondrial|AP004456.1 27 1 24 3 Lutjanus_bengalensis_mitochondrion,|FJ171339.1 34 1 31 3 Hippoglossus_stenolepis_complete|AM749126.1 13 1 11 2 Leptoderma_lubricum_mitochondrial|AP009583.1 30 1 28 2 Paramesotriton_hongkongensis_mitochondrion,|AY458597.1 28 1 26 2 Oncorhynchus_kisutch_mitochondrion,|EF126369.1 29 1 25 4 Arctogadus_glacialis_complete|AM919429.1 27 1 23 4 Phenacobius_mirabilis_mitochondrion,|DQ536431.1 39 1 34 5 Monodactylus_argenteus_mitochondrial|AP009169.1 33 1 31 2 Batrachuperus_londongensis_mitochondrion,|DQ333809.1 33 1 29 4 Parajulis_poecilepterus_mitochondrion,|EF192032.2 33 1 29 4 Micropterus_dolomieu_mitochondrial|AB378749.1 26 1 23 3 Triodon_macropterus_mitochondrial|AP009170.1 38 1 35 3 Takifugu_fasciatus_mitochondrion,|GQ409967.1 33 1 30 3 Makaira_mazara_mitochondrial|AB470304.1 30 1 27 3 Pseudolabrus_eoethinus_mitochondrion,|EU560728.1 28 1 25 3 Hypentelium_nigricans_mitochondrial|AB242169.1 28 1 26 2 Harpadon_microchir_mitochondrial|AP002919.1 13 1 12 1 Nansenia_ardesiaca_mitochondrial|AP004106.1 24 1 22 2 Esomus_metallicus_mitochondrial|AB239594.1 27 1 24 3 Coelophrys_brevicaudata_mitochondrial|AB282834.1 25 1 23 2 Acipenser_transmontanus_mitochondrial|AB042837.1 33 1 31 2 Batrachuperus_pinchonii_mitochondrion,|DQ333815.1 18 1 17 1 Labichthys_carinatus_mitochondrial|AP010856.1 29 1 27 2 Acipenser_gueldenstaedtii_isolate|FJ392605.1 27 1 24 3 Pseudomonacanthus_peroni_mitochondrial|AP009225.1 28 1 26 2 Ethmalosa_fimbriata_mitochondrial|AP009138.1 29 1 25 4 Clupea_pallasii_mitochondrial|AP009134.1 36 1 32 4 Kyphosus_cinerascens_mitochondrial|AP011061.1 25 1 23 2 Bathytroctes_microlepis_mitochondrial|AP009401.1 28 1 26 2 Esox_lucius_mitochondrial|AP004103.1 34 1 31 3 Istiophorus_platypterus_mitochondrial|AB470306.1 25 1 23 2 Distoechodon_tumirostris_voucher|DQ026431.1 32 1 30 2 Anguilla_malgumora_mitochondrial|AP007238.1 27 1 24 3 Meuschenia_hippocrepis_mitochondrial|AP009218.1 32 1 30 2 Cottus_reinii_mitochondrial|AP004442.1 23 1 21 2 Rhinomuraena_quaesita_mitochondrial|AP010844.1 31 1 29 2 Pachyhynobius_shangchengensis_mitochondrion,|DQ333812.1 22 1 19 3 Lophius_americanus_mitochondrial|AP004414.1 27 1 23 4 Arborophila_rufogularis_mitochondrion,|FJ752424.1 25 1 22 3 Pseudobalistes_flavimarginatus_mitochondrial|AP009209.1 25 1 23 2 Pellonula_leonensis_mitochondrial|AP009232.1 30 1 28 2 Oncorhynchus_gorbuscha_mitochondrion,|EF455489.1 28 1 25 3 Epinephelus_lanceolatus_mitochondrion,|FJ472837.1 28 1 26 2 Denticeps_clupeoides_mitochondrial|AP007276.1 33 1 30 3 Cypselurus_hiraii_mitochondrial|AB182653.1 28 1 25 3 Sphoeroides_pachygaster_mitochondrial|AP006745.1 27 1 23 4 Arborophila_rufipectus_mitochondrion,|FJ194942.1 30 1 27 3 Aluterus_scriptus_mitochondrial|AP009183.1 25 1 23 2 Alepocephalus_bicolor_mitochondrial|AP009399.1 35 1 33 2 Arctoscopus_japonicus_mitochondrial|AP003090.1 31 1 28 3 Monocentris_japonicus_mitochondrial|AP004429.1 35 1 29 6 Geococcyx_californianus_mitochondrion,|HM640212.1 38 1 35 3 Takifugu_obscurus_mitochondrial|AP009527.1 37 1 32 5 Cuon_alpinus_mitochondrion,|GU063864.1 25 1 23 2 Acheilognathus_typus_mitochondrial|AB239602.1 32 1 30 2 Moringua_edwardsi_mitochondrial|AP010840.1 32 1 29 3 Barbourisia_rufa_mitochondrial|AP010879.1 31 1 28 3 Cottus_hangiongensis_mitochondrion,|EU332751.1 31 1 28 3 Dinornis_giganteus_mitochondrion,|AY016013.1 30 1 28 2 Nessorhamphus_ingolfianus_mitochondrial|AP010850.1 28 1 25 3 Parataeniophorus_gulosus_mitochondrial|AP010886.1 20 1 19 1 Melanocetus_johnsoni_mitochondrial|AB282838.1 32 1 29 3 Ptychochromoides_katria_mitochondrial|AP009507.1 34 1 30 4 Antigonia_capros_mitochondrial|AP002943.1 30 1 26 4 Campostoma_anomalum_mitochondrion,|DQ536421.1 26 1 24 2 Pseudohynobius_shuichengensis_voucher|FJ532060.1 35 1 32 3 Platichthys_stellatus_mitochondrion,|EF424428.1 27 1 24 3 Tetrapturus_audax_mitochondrial|AB470302.1 30 1 27 3 Aphredoderus_sayanus_mitochondrial|AP004403.1 29 1 26 3 Neoceratias_spinifer_mitochondrial|AB282837.1 36 1 33 3 Collichthys_lucidus_mitochondrion,|HM447239.1 34 1 32 2 Anguilla_bicolor_bicolor|AP007236.1 31 1 29 2 Protohynobius_puxiongensis_voucher|FJ532058.1 28 1 25 3 Grus_nigricollis_mitochondrion,|FJ769851.1 29 1 27 2 Ardea_novaehollandiae_mitochondrion,|DQ780878.1 35 1 32 3 Coreoperca_kawamebari_mitochondrial|AP005990.1 32 1 30 2 Facciolella_oxyrhyncha_mitochondrial|AP010866.1 27 1 24 3 Exocoetus_volitans_mitochondrial|AP002933.1 26 1 23 3 Pungtungia_herzi_mitochondrial|AB239598.1 26 1 23 3 Gila_robusta_mitochondrion,|DQ536424.1 32 1 29 3 Clinocottus_analis_mitochondrion,|FJ848374.1 31 1 28 3 Anarhichas_minor_mitochondrion,|EF427917.1 27 1 24 3 Ischikauia_steenackeri_mitochondrial|AB239601.1 30 1 27 3 Grus_rubicunda_mitochondrion,|FJ769853.1 34 1 31 3 Lutjanus_rivulatus_mitochondrial|AP006000.1 28 1 26 2 Haematopus_ater_mitochondrion,|AY074886.2 28 1 26 2 Odaxothrissa_vittata_mitochondrial|AP009231.1 30 1 27 3 Morone_saxatilis_mitochondrion,|HM447585.1 28 1 26 2 Oncorhynchus_masou_formosanus|DQ858456.1 34 1 31 3 Culaea_inconstans_mitochondrial|AB445125.1 26 1 23 3 Gobio_gobio_mitochondrial|AB239596.1 24 1 22 2 Leptochilichthys_agassizii_mitochondrial|AP009403.1 34 1 30 4 Psenes_cyanophrys_mitochondrial|AP011067.1 29 1 26 3 Ostracion_immaculatus_mitochondrial|AP009176.1 31 1 28 3 Grus_japonensis_mitochondrion,|FJ769847.1 26 1 22 4 Triacanthus_biaculeatus_mitochondrial|AP009174.1 22 1 20 2 Aratinga_pertinax_chrysogenys|HM640208.1 27 1 23 4 Dryocopus_pileatus_mitochondrion,|DQ780879.1 26 1 23 3 Gila_conspersa_mitochondrial|AP009315.1 27 1 24 3 Pollachius_pollachius_complete|FR751400.1 28 1 25 3 Parargyrops_edita_mitochondrion,|EF107158.1 23 1 20 3 Lutjanus_russellii_mitochondrion,|EF514208.1 29 1 25 4 Alosa_pseudoharengus_mitochondrial|AP009132.1 30 1 27 3 Leptotila_verreauxi_mitochondrion,|HM640214.1 32 1 29 3 Anguilla_bengalensis_labiata|AP007245.1 29 1 25 4 Clupea_harengus_mitochondrial|AP009133.1 30 1 27 3 Lactoria_diaphana_mitochondrial|AP009187.1 29 1 26 3 Siganus_unimaculatus_mitochondrial|AP006031.1 26 1 23 3 Sprattus_sprattus_mitochondrial|AP009234.1 32 1 29 3 Engraulis_japonicus_mitochondrial|AB040676.1 34 1 27 7 Dinodon_semicarinatus_mitochondrial|AB008539.1 29 1 27 2 Pseudohynobius_tsinpaensis_mitochondrion,|DQ333813.1 33 1 31 2 Coloconger_cadenati_mitochondrial|AP010863.1 24 1 20 4 Salmo_salar_mitochondrion,|U12143.1 22 1 19 3 Chlorophthalmus_agassizi_mitochondrial|AP002918.1 16 1 15 1 Lophiodes_caulinaris_mitochondrial|AB282826.1 34 1 30 4 Canthigaster_rivulata_mitochondrial|AP006744.1 26 1 24 2 Gymnothorax_kidako_mitochondrial|AP002976.1 30 1 28 2 Oncorhynchus_nerka_mitochondrion,|EF055889.1 32 1 29 3 Cynoponticus_ferox_mitochondrial|AP010853.1 34 1 27 7 Bungarus_multicinctus_mitochondrion,|EU579522.1 33 1 31 2 Batrachuperus_yenyuanensis_mitochondrion,|DQ333818.1 25 1 22 3 Oryzias_luzonensis_mitochondrial|AB498064.1 34 1 30 4 Arothron_firmamentum_mitochondrial|AP006742.1 34 1 31 3 Anarhichas_denticulatus_mitochondrion,|EF427918.1 31 1 27 4 Micromesistius_poutassou_complete|FR751401.1 30 1 28 2 Acipenser_dabryanus_mitochondrion,|AY510085.1 24 1 21 3 Gadus_ogac_haplotype|DQ356941.1 23 1 20 3 Zeus_faber_mitochondrial|AP002941.1 37 1 34 3 Takifugu_oblongus_mitochondrial|AP009535.1 30 1 27 3 Lamprogrammus_niger_mitochondrial|AP004410.1 37 1 34 3 Takifugu_rubripes_complete|AJ421455.1 28 1 25 3 Lutjanus_erythropterus_mitochondrion,|GQ265897.1 25 1 23 2 Maulisia_mauli_mitochondrial|AP009404.1 32 1 29 3 Engraulis_encrasicolus_mitochondrial|AP009137.1 29 1 26 3 Epinephelus_lanceolatus_mitochondrion,|HQ660062.1 36 1 31 5 Thalassenchelys_sp._Tht2|AP010867.1 27 1 24 3 Sardinella_maderensis_mitochondrial|AP009143.1 25 1 23 2 Scaphirhynchus_cf._albus|AP004354.1 32 1 29 3 Macrorhamphosodes_uradoi_mitochondrial|AP009171.1 29 1 26 3 Scorpis_lineolata_mitochondrial|AP011063.1 28 1 23 5 Cobitis_sinensis_mitochondrion,|AY526868.1 24 1 21 3 Sarcocheilichthys_variegatus_microoculus|AB054124.1 27 1 24 3 Xiphias_gladius_mitochondrial|AB470301.1 33 1 30 3 Epinephelus_septemfasciatus_isolate|FJ594966.1 33 1 29 4 Epinephelus_akaara_mitochondrion,|EU043377.1 25 1 22 3 Schistura_balteata_mitochondrial|AB242172.1 35 1 32 3 Lepisosteus_osseus_mitochondrion,|DQ536423.1 28 1 26 2 Physiculus_japonicus_mitochondrial|AP004409.1 30 1 27 3 Acreichthys_tomentosus_mitochondrial|AP009213.1 34 1 30 4 Pterocaesio_tile_mitochondrial|AP004447.1 33 1 31 2 Anguilla_anguilla_mitochondrial|AP007233.1 28 1 25 3 Acanthaluteres_brownii_mitochondrial|AP009212.1 33 1 31 2 Enoplosus_armatus_mitochondrial|AP006008.1 24 1 22 2 Diplacanthopoma_brachysoma_mitochondrial|AP004408.1 34 1 32 2 Anguilla_megastoma_mitochondrial|AP007243.1 30 1 28 2 Trogon_viridis_mitochondrion,|EU410490.1 31 1 28 3 Odonus_niger_mitochondrial|AP009208.1 28 1 26 2 Neoscopelus_microchir_mitochondrial|AP002921.1 23 1 20 3 Gadus_morhua_complete|X99772.1 28 1 25 3 Danio_rerio_mitochondrial|AC024175.3 31 1 28 3 Lycodes_toyamensis_mitochondrial|AP004448.1 33 1 30 3 Lutjanus_sebae_mitochondrion,|FJ824742.1 29 1 26 3 Grus_grus_mitochondrion,|FJ769849.1 35 1 31 4 Canthigaster_coronata_mitochondrial|AP006743.1 31 1 28 3 Pholis_crassispina_mitochondrial|AP004449.1 32 1 30 2 Paralichthys_olivaceus_mitochondrial|AB028664.1 32 1 28 4 Epinephelus_coioides_mitochondrion,|EU043376.1 30 1 26 4 Trixiphichthys_weberi_mitochondrial|AP009173.1 28 1 25 3 Cobitis_striata_mitochondrial|AB054125.1 25 1 22 3 Triacanthodes_anomalus_mitochondrial|AP009172.1 27 1 24 3 Grus_americana_mitochondrion,|FJ769848.1 33 1 30 3 Cottus_poecilopus_mitochondrion,|EU332750.1 24 1 21 3 Hypoplectrus_gemma_mitochondrion,|FJ848375.1 33 1 31 2 Anguilla_australis_australis|AP007234.1 19 1 17 2 Oryzias_dancena_mitochondrial|AB498069.1 33 1 30 3 Menidia_menidia_mitochondrial|AB370893.1 36 1 31 5 Acanthurus_lineatus_mitochondrion,|EU273284.2 33 1 31 2 Collichthys_niveatus_mitochondrion,|HM219223.1 37 1 33 4 Micropterus_salmoides_mitochondrion,|DQ536425.1 27 1 25 2 Zenion_japonicum_mitochondrial|AP004434.1 26 1 23 3 Brachaluteres_ulvarum_mitochondrial|AP009215.1 35 1 32 3 Labracoglossa_argentiventris_mitochondrial|AP011062.1 26 1 23 3 Fistularia_commersonii_mitochondrial|AP005987.1 33 1 31 2 Anguilla_obscura_mitochondrial|AP007247.1 26 1 23 3 Ranzania_laevis_mitochondrial|AP006047.1 34 1 32 2 Anguilla_luzonensis_mitochondrial|AB469437.1 33 1 31 2 Anguilla_australis_schmidti|AP007235.1 24 1 21 3 Merlangius_merlangus_mitochondrion,|DQ020496.1 28 1 26 2 Hoplunnis_punctata_mitochondrial|AP010865.1 33 1 26 7 Hypsiglena_chlorophaea_chlorophaea|EU728593.1 31 1 28 3 Pungitius_kaibarae_mitochondrion,|EU332749.1 26 1 24 2 Verasper_variegatus_mitochondrion,|DQ403797.1 26 1 24 2 Acanthopagrus_latus_mitochondrion,|EF506764.1 33 1 31 2 Anguilla_nebulosa_nebulosa|AP007246.1 16 1 14 2 Oryzias_dancena_isolate|GU013789.1 29 1 26 3 Grus_monacha_mitochondrion,|FJ769850.1 28 1 25 3 Hypselecara_temporalis_mitochondrial|AP009506.1 30 1 28 2 Acipenser_sinensis_mitochondrion,|EU719645.1 27 1 25 2 Erpetoichthys_calabaricus_mitochondrion,|AY442348.1 21 1 18 3 Cyclemys_atripons_mitochondrion,|EF067858.1 38 1 34 4 Monopterus_albus_mitochondrial|AP002945.1 34 1 31 3 Anguilla_interioris_mitochondrial|AP007241.1 31 1 27 4 Ixobrychus_cinnamomeus_mitochondrion,|HQ690247.1 38 1 34 4 Hynobius_yangi_isolate|FJ594965.1 30 1 28 2 Labracinus_cyclophthalmus_mitochondrial|AP009125.1 28 1 25 3 Etrumeus_teres_mitochondrial|AP009139.1 24 1 21 3 Saurida_undosquamis_mitochondrial|AP002920.1 30 1 28 2 Oncorhynchus_clarkii_henshawi|AY886762.1 33 1 31 2 Thryssa_baelama_mitochondrial|AP009616.1 28 1 26 2 Oncorhynchus_masou_ishikawae|DQ864464.1 25 1 22 3 Salarias_fasciatus_mitochondrial|AP004451.1 33 1 31 2 Anguilla_dieffenbachii_mitochondrial|AP007240.1 33 1 30 3 Hoplostethus_japonicus_mitochondrial|AP002938.1 27 1 24 3 Pagrus_major_mitochondrial|AP002949.1 31 1 28 3 Anyperodon_leucogrammicus_mitochondrion,|GQ131336.1 28 1 26 2 Coregonus_lavaretus_mitochondrial|AB034824.1 31 1 28 3 Pungitius_pungitius_mitochondrial|AB445130.1 31 1 28 3 Anoplogaster_cornuta_mitochondrial|AP004425.1 34 1 31 3 Aulichthys_japonicus_mitochondrial|AB445127.1 30 1 28 2 Serrivomer_sector_mitochondrial|AP007250.1 32 1 27 5 Cataetyx_rubrirostris_mitochondrial|AP004407.1 25 1 21 4 Bonasa_bonasia_mitochondrion,|FJ752435.1 31 1 27 4 Abudefduf_vaigiensis_mitochondrial|AP006016.1 30 1 27 3 Iso_hawaiiensis_mitochondrial|AB373006.1 27 1 25 2 Myroconger_compressus_mitochondrial|AP010847.1 31 1 28 3 Acanthurus_leucosternon_mitochondrion,|EU136032.1 29 1 26 3 Dorosoma_cepedianum_mitochondrion,|DQ536426.1 26 1 24 2 Satyrichthys_amiscus_mitochondrial|AP004441.1 30 1 28 2 Acipenser_stellatus_complete|AJ585050.1 20 1 19 1 Melanocetus_murrayi_mitochondrial|AP004418.1 23 1 20 3 Theragra_chalcogramma_mitochondrial|AB094061.1 28 1 24 4 Alosa_sapidissima_mitochondrion,|HQ331537.1 22 1 19 3 Diaphus_splendidus_mitochondrial|AP002923.1 29 1 25 4 Mastacembelus_favus_mitochondrial|AP002946.1 28 1 26 2 Oncorhynchus_mykiss_mitochondrion|L29771.1 30 1 28 2 Huso_huso_mitochondrion,|AY442351.1 32 1 30 2 Coilia_reynaldi_mitochondrial|AP011559.1 26 1 23 3 Herwigia_kreffti_mitochondrial|AP009582.1 27 1 24 3 Reinhardtius_hippoglossoides_complete|AM749130.1 27 1 25 2 Salamandrella_keyserlingii_mitochondrion,|DQ333814.1 33 1 31 2 Hynobius_formosanus_mitochondrion,|DQ333816.1 19 1 17 2 Chromobotia_macracanthus_mitochondrial|AB242163.1 33 1 29 4 Paratilapia_polleni_mitochondrial|AP009508.1 31 1 27 4 Eudyptula_minor_mitochondrion,|AF362763.1 20 1 18 2 Oryzias_latipes_mitochondrial|AP004421.1 25 1 23 2 Bathyprion_danae_mitochondrial|AP009400.1 34 1 32 2 Anguilla_sp._HYT-2008|EU917054.1 34 1 31 3 Gasterosteus_wheatlandi_mitochondrial|AB445129.1 28 1 24 4 Zebrasoma_flavescens_mitochondrial|AP006032.1 28 1 25 3 Tetraodon_nigroviridis_mitochondrion,|DQ019313.1 31 1 28 3 Beryx_splendens_mitochondrial|AP002939.1 35 1 33 2 Anguilla_bicolor_pacifica|AP007237.2 36 1 33 3 Diagramma_pictum_mitochondrial|AP009167.1 33 1 30 3 Platax_orbicularis_mitochondrial|AP006825.1 31 1 27 4 Geotrygon_violacea_mitochondrion,|HM640213.1 34 1 31 3 Hypoptychus_dybowskii_mitochondrial|AP004437.1 28 1 26 2 Polyodon_spathula_mitochondrial|AP004353.1 29 1 26 3 Melanogrammus_aeglefinus_mitochondrion,|DQ020497.1 31 1 28 3 Aplocheilus_panchax_mitochondrial|AB373005.1 39 1 31 8 Micrurus_fulvius_mitochondrion,|GU045453.1 31 1 28 3 Etroplus_maculatus_mitochondrial|AP009505.1 19 1 17 2 Chirocentrus_dorab_mitochondrial|AP006229.1 13 1 12 1 Raja_radiata_mitochondrion,|AF106038.1 30 1 27 3 Halichoeres_trimaculatus_mitochondrion,|EU087704.1 30 1 28 2 Bungarus_fasciatus_mitochondrion,|EU579523.1 33 1 31 2 Hynobius_chinensis_mitochondrion,|DQ333819.1 32 1 29 3 Masturus_lanceolatus_mitochondrial|AP006239.1 23 1 21 2 Galaxias_sp._'southern'|HM106488.1 28 1 26 2 Oncorhynchus_masou_'Biwa'|EF105342.1 21 1 18 3 Ventrifossa_garmani_mitochondrial|AP008991.1 27 1 23 4 Misgurnus_nikolskyi_mitochondrial|AB242171.1 28 1 26 2 Oncorhynchus_masou_masou|DQ864465.1 24 1 21 3 Myctophum_affine_mitochondrial|AP002922.1 35 1 32 3 Etheostoma_radiosum_mitochondrion,|AY341348.2 36 1 32 4 Cyprinodon_rubrofluviatilis_mitochondrion,|EF442803.2 34 1 31 3 Hippoglossus_hippoglossus_complete|AM749122.1 32 1 28 4 Percina_macrolepida_mitochondrion,|DQ536430.1 28 1 25 3 Niwaella_delicata_mitochondrial|AP009308.1 30 1 27 3 Bassozetus_zenkevitchi_mitochondrial|AP004405.1 26 1 23 3 Tetrapturus_angustirostris_mitochondrial|AB470303.1 33 1 31 2 Luvarus_imperialis_mitochondrial|AP009161.1 31 1 28 3 Apeltes_quadracus_mitochondrial|AB445126.1 20 1 18 2 Nothobranchius_furzeri_strain|EU650204.1 34 1 31 3 Naso_lopezi_mitochondrial|AP009163.1 29 1 26 3 Coelorinchus_kishinouyei_mitochondrial|AP002929.1 25 1 22 3 Eutaeniophorus_sp._033-Miya|AP004424.1 30 1 28 2 Stemonidium_hypomelas_mitochondrial|AP010858.1 32 1 29 3 Siganus_fuscescens_mitochondrion,|EF025185.1 29 1 26 3 Polymixia_japonica_mitochondrial|AB034826.1 30 1 27 3 Lota_lota_mitochondrial|AP004412.1 33 1 31 2 Anguilla_rostrata_mitochondrial|AP007249.2 11 1 9 2 Balearica_pavonina_mitochondrion,|FJ769842.1 34 1 31 3 Makaira_indica_mitochondrial|AB470305.1 30 1 25 5 Trachurus_trachurus_mitochondrial|AB108498.1 23 1 20 3 Cryptopsaras_couesii_mitochondrial|AB282850.1 32 1 28 4 Hynobius_leechii_mitochondrion,|DQ333811.1 31 1 28 3 Caranx_melampygus_mitochondrial|AP004445.1 31 1 28 3 Anomalopteryx_didiformis_mitochondrion,|AF338714.1 29 1 26 3 Dallia_pectoralis_mitochondrial|AP004102.1 28 1 24 4 Alosa_alosa_mitochondrial|AP009131.1 28 1 26 2 Nematalosa_japonica_mitochondrial|AP009142.1 34 1 32 2 Anguilla_marmorata_mitochondrial|AP007242.1 27 1 25 2 Hynobius_amjiensis_mitochondrion,|DQ333808.1 29 1 26 3 Boreogadus_saida_complete|AM919428.1 32 1 29 3 Pseudolabrus_sieboldi_mitochondrial|AP006019.1 35 1 30 5 Tylochromis_polylepis_mitochondrial|AP009509.1 29 1 27 2 Paraconger_notialis_mitochondrial|AP010860.1 33 1 31 2 Anguilla_mossambica_mitochondrial|AP007244.1 26 1 23 3 Ctenopharyngodon_idella_mitochondrion,|HQ891005.1 33 1 31 2 Amia_calva_mitochondrial|AB042952.1 20 1 18 2 Menura_novaehollandiae_mitochondrion,|AY542313.1 34 1 31 3 Gasterosteus_aculeatus_mitochondrial|AP002944.1 32 1 28 4 Astronotus_ocellatus_mitochondrial|AP009127.1 26 1 23 3 Ctenopharyngodon_idella_mitochondrion,|EU391390.1 30 1 27 3 Pennahia_argentata_mitochondrion,|HQ890946.1 26 1 22 4 Toxotes_chatareus_mitochondrial|AP006806.1 25 1 21 4 Cynoglossus_abbreviatus_mitochondrion,|GQ380410.1 22 1 20 2 Diceratias_pileatus_mitochondrial|AB282842.1 28 1 26 2 Leptocephalus_sp._'type|AP010868.1 30 1 26 4 Procetichthys_kreffti_mitochondrial|AP010880.1 32 1 30 2 Coilia_nasus_mitochondrial|AP009135.1 32 1 29 3 Pampus_sp._LY-2009|EU357803.1 30 1 26 4 Odax_cyanomelas_mitochondrial|AP009130.1 30 1 28 2 Nettastoma_parviceps_mitochondrial|AP010864.1 27 1 23 4 Spicara_maena_mitochondrial|AP009164.1 28 1 25 3 Pollachius_virens_complete|FR751399.1 34 1 31 3 Cymatogaster_aggregata_mitochondrial|AP009128.1 33 1 31 2 Anguilla_reinhardtii_mitochondrial|AP007248.1 34 1 31 3 Larimichthys_polyactis_mitochondrion,|FJ618559.1 25 1 23 2 Bathytroctes_michaelsarsi_mitochondrial|AP009579.1 23 1 20 3 Salvelinus_alpinus_mitochondrion|AF154851.1 31 1 29 2 Pseudohynobius_flavomaculatus_voucher|FJ532059.1 26 1 23 3 Narcetes_erimelas_mitochondrial|AP009405.1 32 1 29 3 Aulorhynchus_flavidus_mitochondrial|AP009196.1 25 1 22 3 Raiamas_senegalensis_mitochondrial|AP010780.1 30 1 28 2 Saccopharynx_lavenbergi_mitochondrial|AB047825.1 30 1 28 2 Eurypharynx_pelecanoides_mitochondrial|AB046473.2 30 1 27 3 Halichoeres_melanurus_mitochondrial|AP006018.1 37 1 33 4 Micropterus_salmoides_salmoides|HQ391896.1 9 1 7 2 Pseudopungtungia_tenuicorpus_mitochondrion,|FJ515917.1 32 1 29 3 Lutjanus_malabaricus_mitochondrion,|FJ824741.1 31 1 28 3 Girella_punctata_mitochondrial|AP011060.1 32 1 29 3 Cubiceps_pauciradiatus_mitochondrial|AP006038.1 12 1 11 1 Bathylagus_ochotensis_mitochondrial|AP004101.1 31 1 28 3 Centropyge_loricula_mitochondrial|AP006006.1 34 1 30 4 Lutjanus_kasmira_mitochondrion,|FJ416614.1 26 1 23 3 Rhynchactis_macrothrix_mitochondrial|AB282853.1 19 1 16 3 Myrichthys_maculosus_mitochondrial|AP010862.1 39 1 33 6 Mesocricetus_auratus_mitochondrion,|EU660218.1 32 1 29 3 Chaetodon_auripes_mitochondrial|AP006004.1 36 1 33 3 Kuhlia_mugil_mitochondrial|AP011065.1 25 1 20 5 Zenopsis_nebulosus_mitochondrial|AP002942.1 26 1 23 3 Balearica_pavonina_regulorum|FJ769841.1 30 1 26 4 Neocyttus_rhomboidalis_mitochondrial|AP004436.1 34 1 31 3 Hypoatherina_tsurugae_mitochondrial|AP004420.1 23 1 21 2 Galaxias_maculatus_mitochondrial|AP004104.1 24 1 21 3 Allocyttus_niger_mitochondrial|AP004435.1 26 1 24 2 Brevoortia_tyrannus_mitochondrial|AP009618.1 35 1 32 3 Odontesthes_sp._Odsp-001|AB370894.1 25 1 22 3 Rondeletia_loricata_mitochondrial|AP002937.1 25 1 22 3 Cynoglossus_semilaevis_mitochondrion,|EU366230.1 28 1 26 2 Opisthoproctus_soleatus_mitochondrial|AP004110.1 35 1 32 3 Oplegnathus_punctatus_mitochondrial|AP011066.1 23 1 20 3 Salvelinus_fontinalis_mitochondrion|AF154850.1 26 1 23 3 Verasper_moseri_mitochondrion,|EF025506.1 30 1 27 3 Oncorhynchus_tshawytscha_mitochondrion,|AF392054.1 28 1 25 3 Pagellus_bogaraveo_mitochondrial|AB305023.1 27 1 24 3 Gobiobotia_macrocephala_mitochondrion,|FJ515918.1 36 1 32 4 Parakneria_cameronensis_mitochondrial|AP007279.1 19 1 17 2 Lagocephalus_wheeleri_mitochondrial|AP009538.1 35 1 29 6 Geococcyx_californianus_mitochondrion,|EU410488.1 26 1 23 3 Sardina_pilchardus_mitochondrial|AP009233.1 28 1 25 3 Clupeonella_cultriventris_mitochondrial|AP009615.1 37 1 34 3 Takifugu_chinensis_mitochondrial|AP009534.1 23 1 21 2 Bajacalifornia_megalops_mitochondrial|AP009578.1 33 1 31 2 Hynobius_guabangshanensis_mitochondrion,|GU384690.1 23 1 20 3 Theragra_finnmarchica_complete|AM489718.1 33 1 31 2 Anguilla_celebesensis_mitochondrial|AP007239.1 29 1 27 2 Anarchias_sp._Ansp|AP010843.1 22 1 18 4 Merluccius_merluccius_complete|FR751402.1 37 1 34 3 Melanotaenia_lacustris_mitochondrial|AP004419.1 37 1 33 4 Micropterus_floridanus_mitochondrion,|HQ391897.1 27 1 25 2 Polypterus_senegalus_senegalus|AP004352.1 26 1 22 4 Spinachia_spinachia_mitochondrial|AB445128.1 26 1 22 4 Salmo_trutta_trutta|AM910409.1 19 1 18 1 Lepisosteus_oculatus_mitochondrial|AB042861.1 30 1 27 3 Pungitius_sinensis_mitochondrion,|EU332748.1 11 1 10 1 Lagocephalus_lunaris_mitochondrion,|GQ461750.1 36 1 33 3 Leiocephalus_personatus_mitochondrial|AB266739.1 27 1 24 3 Coreoleuciscus_splendidus_mitochondrion,|DQ347951.2 32 1 28 4 Emeus_crassus_mitochondrion,|AY016015.1 29 1 27 2 Cetostoma_regani_mitochondrial|AP004423.1 30 1 27 3 Danacetichthys_galathenus_mitochondrial|AP002936.1 18 1 16 2 Thymallus_thymallus_mitochondrion,|FJ853655.1 32 1 29 3 Beryx_decadactylus_mitochondrial|AP004430.1 27 1 25 2 Dorosoma_petenense_mitochondrial|AP009136.1 31 1 28 3 Anarhichas_lupus_mitochondrion,|EF427916.1 26 1 24 2 Heteroconger_hassi_mitochondrial|AP010859.1 26 1 23 3 Leptobotia_mantschurica_mitochondrial|AB242170.1 31 1 28 3 Beryx_mollis_mitochondrion,|DQ993168.1 27 1 24 3 Sardinops_melanostictus_mitochondrial|AB032554.1 254 15 188 66 Guillardia_theta_nucleomorph|AF165818.4 255 15 189 66 Guillardia_theta_DNA|AJ010592.2 254 15 188 66 Guillardia_theta_nucleomorph|AF083031.2 719 153 475 244 Homo_sapiens_mitochondrion,|J01415.2 694 147 467 227 Homo_sapiens_neanderthalensis|AM948965.1 667 134 454 213 Homo_sp._Altai|FN673705.1 667 134 454 213 Homo_sp._Altai|FR695060.1 712 151 472 240 Homo_sapiens_mitochondrial|X93334.1 456 48 351 105 Pan_troglodytes_schweinfurthii|GU112740.1 454 49 351 103 Pan_troglodytes_troglodytes|GU112738.1 78 6 62 16 Neolamprologus_brichardi_mitochondrial|AP006014.1 110 5 77 33 Tripsacum_dactyloides_cultivar|DQ984517.1 454 49 350 104 Pan_troglodytes_verus|GU112739.1 459 50 351 108 Pan_troglodytes_vellerosus|GU112742.1 453 48 347 106 Pan_troglodytes_ellioti|HM068585.1 446 47 345 101 Pan_troglodytes_mitochondrial|D38113.1 327 33 250 77 Gorilla_gorilla_mitochondrial|D38114.1 337 33 257 80 Gorilla_gorilla_gorilla|X93347.1 487 51 370 117 Pan_paniscus_mitochondrial|D38116.1 129 5 99 30 Zea_perennis_mitochondrion,|DQ645538.1 99 3 83 16 Zea_mays_strain|AY506529.1 57 1 47 10 Zea_mays_subsp.|DQ645536.1 57 1 47 10 Zea_mays_subsp.|DQ645539.1 79 2 64 15 Zea_luxurians_mitochondrion,|DQ645537.1 87 6 69 18 Macaca_thibetana_mitochondrion,|EU294187.1 198 19 150 48 Hylobates_pileatus_mitochondrial|AB504749.1 201 16 158 43 Symphalangus_syndactylus_mitochondrial|AB504750.1 171 15 134 37 Hylobates_agilis_mitochondrial|AB504748.1 182 15 144 38 Nomascus_siki_mitochondrial|AB504751.1 178 15 140 38 Nomascus_gabriellae_isolate|HQ622806.1 185 15 143 42 Hylobates_lar_complete|X99256.1 94 8 76 18 Pygathrix_nemaeus_mitochondrion,|DQ355302.1 97 4 83 14 Mus_musculus_musculus|DQ874614.2 100 4 86 14 Mus_musculus_molossinus|AY675564.1 134 10 108 26 Mus_musculus_domesticus|AB042432.1 134 10 108 26 Mus_musculus_strain|AY172335.1 52 2 45 7 Eulemur_fulvus_fulvus|AB371086.1 53 2 45 8 Eulemur_macaco_macaco|AB371088.1 34 2 27 7 Galago_senegalensis_mitochondrial|AB371092.1 26 2 18 8 Sciurus_vulgaris_complete|AJ238588.1 43 2 33 10 Loris_tardigradus_mitochondrial|AB371094.1 15 2 10 5 Thylamys_elegans_partial|AJ508401.2 25 2 18 7 Anomalurus_sp._GP-2005|AM159537.1 40 2 33 7 Mus_terricolor_mitochondrion,|EU352649.1 52 2 45 7 Eulemur_fulvus_mayottensis|AB371087.1 31 2 23 8 Rattus_fuscipes_isolate|GU570664.1 47 2 38 9 Hemiechinus_auritus_mitochondrial|AB099481.1 44 2 37 7 Didelphis_virginiana_complete|Z29573.1 23 2 16 7 Trichosurus_vulpecula_mitochondrion,|AF357238.1 30 2 25 5 Eulemur_mongoz_complete|AM905040.1 40 2 32 8 Perodicticus_potto_mitochondrial|AB371095.1 19 2 9 10 Thylacinus_cynocephalus_mitochondrion,|FJ515780.1 37 2 32 5 Cavia_porcellus_complete|AJ222767.1 32 2 27 5 Propithecus_verreauxi_coquereli|AB286049.1 32 2 26 6 Eothenomys_chinensis_mitochondrion,|FJ483847.1 39 2 30 9 Spalax_ehrenbergi_complete|AJ416891.1 49 3 39 10 Balaenoptera_borealis_mitochondrial|AP006470.1 50 3 40 10 Balaenoptera_omurai_mitochondrial|AB201256.1 49 3 39 10 Balaenoptera_edeni_mitochondrial|AB201258.1 52 4 40 12 Balaenoptera_brydei_mitochondrial|AB201259.1 52 4 40 12 Balaenoptera_brydei_mitochondrial|AP006469.1 63 4 54 9 Capricornis_crispus_mitochondrial|AP003429.1 62 4 53 9 Capricornis_sumatraensis_mitochondrion,|FJ207534.1 53 4 42 11 Megaptera_novaeangliae_mitochondrial|AP006467.1 58 5 46 12 Procyon_lotor_mitochondrial|AB297804.1 40 4 28 12 Chalinolobus_tuberculatus_mitochondrial|AF321051.1 52 3 40 12 Ochotona_curzoniae_mitochondrion,|EF535828.1 57 3 44 13 Sorex_unguiculatus_mitochondrial|AB061527.1 32 3 24 8 Rattus_leucopus_isolate|GU570659.1 47 3 38 9 Tupaia_belangeri_mitochondrion,|AF217811.1 34 3 26 8 Rattus_tunneyi_isolate|GU570662.1 35 3 27 8 Rattus_sordidus_isolate|GU570665.1 40 3 32 8 Cynocephalus_variegatus_complete|AJ428849.1 36 3 28 8 Rattus_exulans_isolate|EU273710.1 38 3 29 9 Rattus_lutreolus_isolate|GU570661.1 57 3 52 5 Chrysochloris_asiatica_mitochondrial|AB096866.1 33 3 25 8 Rattus_praetor_isolate|EU273708.1 38 3 30 8 Rattus_tanezumi_isolate|EU273712.1 36 3 28 8 Rattus_exulans_isolate|EU273709.1 36 3 30 6 Proedromys_liangshanensis_mitochondrion,|FJ463038.1 49 3 43 6 Macroscelides_proboscideus_complete|AJ421452.1 55 4 47 8 Microtus_kikuchii_mitochondrion,|AF348082.1 48 4 39 9 Muntiacus_reevesi_mitochondrion,|AF527537.1 44 4 35 9 Muntiacus_muntjak_mitochondrion,|AY225986.1 49 4 40 9 Rattus_rattus_isolate|EU273707.1 72 4 63 9 Uncia_uncia_mitochondrion,|EF551004.1 45 4 37 8 Muntiacus_crinifrons_mitochondrion,|AY239042.1 43 4 34 9 Rattus_villosissimus_isolate|GU570663.1 67 4 46 21 Chlorocebus_pygerythrus_mitochondrion,|EF597500.1 41 4 33 8 Bradypus_tridactylus_mitochondrion,|AY960979.1 52 3 44 8 Microtus_fortis_calamorum|JF261175.1 50 3 42 8 Microtus_fortis_fortis|JF261174.1 184 13 156 28 Pongo_pygmaeus_mitochondrial|D38115.1 40 3 29 11 Equus_asinus_complete|X97337.1 42 3 31 11 Equus_caballus_mitochondrial|X79547.1 54 4 39 15 Dicerorhinus_sumatrensis_mitochondrion,|FJ905816.1 63 4 47 16 Coelodonta_antiquitatis_mitochondrion,|FJ905813.1 60 5 45 15 Rhinoceros_unicornis_complete|X97336.1 108 5 85 23 Papio_hamadryas_mitochondrial|Y18001.1 77 5 56 21 Chlorocebus_tantalus_mitochondrion,|EF597502.1 73 5 55 18 Macaca_mulatta_mitochondrion,|AY612638.1 79 5 60 19 Macaca_fascicularis_mitochondrion,|FJ906803.1 64 5 44 20 Cercopithecus_aethiops_mitochondrion,|AY863426.1 79 5 62 17 Macaca_sylvanus_mitochondrial|AJ309865.1 70 7 54 16 Aotus_lemurinus_mitochondrion,|FJ785421.1 70 7 56 14 Ateles_belzebuth_mitochondrion,|FJ785422.1 78 7 65 13 Callicebus_donacophilus_mitochondrion,|FJ785423.1 108 8 80 28 Semnopithecus_entellus_mitochondrion,|DQ355297.1 98 7 78 20 Pygathrix_roxellana_mitochondrion,|DQ355300.1 99 7 81 18 Presbytis_melalophos_mitochondrion,|DQ355299.1 84 6 63 21 Cercopithecus_aethiops_sabaeus|DQ069713.1 83 6 62 21 Theropithecus_gelada_mitochondrion,|FJ785426.1 92 4 80 12 Mus_musculus_castaneus|EF108342.1 56 3 49 7 Oryctolagus_cuniculus_complete|AJ001588.1 50 3 45 5 Orycteropus_afer_complete|Y18475.1 62 4 51 11 Pontoporia_blainvillei_complete|AJ554060.1 53 5 40 13 Eubalaena_australis_mitochondrial|AP006473.1 61 5 48 13 Eubalaena_japonica_mitochondrial|AP006474.1 79 6 66 13 Caperea_marginata_complete|AJ554052.1 67 6 55 12 Kogia_breviceps_complete|AJ554055.1 63 6 54 9 Lama_guanicoe_mitochondrion,|EU681954.1 76 6 63 13 Panthera_tigris_amoyensis|HM589214.1 73 6 62 11 Panthera_pardus_mitochondrion,|EF551002.1 64 6 56 8 Ovibos_moschatus_mitochondrion,|FJ207536.1 74 6 61 13 Panthera_tigris_mitochondrion,|EF551003.1 74 6 61 13 Panthera_tigris_amoyensis|HM589215.1 72 6 63 9 Naemorhedus_caudatus_mitochondrion,|FJ469673.1 68 6 60 8 Naemorhedus_griseus_mitochondrion,|FJ207532.1 55 6 45 10 Dasypus_novemcinctus_complete|Y11832.1 63 5 55 8 Camelus_bactrianus_ferus|EF212038.2 63 5 55 8 Camelus_bactrianus_isolate|EF212037.2 61 4 48 13 Ochotona_collaris_mitochondrion,|AF348080.1 59 4 47 12 Ochotona_princeps_complete|AJ537415.1 57 4 44 13 Balaena_mysticetus_complete|AJ554051.1 58 4 48 10 Balaenoptera_acutorostrata_complete|AJ554054.1 60 4 49 11 Balaenoptera_bonaerensis_mitochondrial|AP006466.1 68 5 56 12 Castor_fiber_complete|FR691688.1 68 5 56 12 Castor_fiber_complete|FR691687.1 68 5 56 12 Castor_fiber_complete|FR691685.1 68 5 56 12 Castor_fiber_complete|FR691689.1 68 5 56 12 Castor_fiber_complete|FR691686.1 63 6 49 14 Hippopotamus_amphibius_complete|AJ010957.1 63 6 55 8 Elephantulus_sp._VB001|AB096867.1 72 5 55 17 Inia_geoffrensis_complete|AJ554059.1 55 5 47 8 Vicugna_vicugna_isolate|FJ456892.1 57 5 48 9 Lama_glama_mitochondrial|AP003426.1 71 6 60 11 Castor_canadensis_complete|FR691684.1 65 5 55 10 Muntiacus_reevesi_micrurus|EF035447.1 70 5 61 9 Lepus_europaeus_complete|AJ421471.1 68 5 59 9 Felis_catus_mitochondrion,|U20753.1 67 4 59 8 Camelus_dromedarius_mitochondrion,|EU159113.1 71 4 61 10 Eschrichtius_robustus_complete|AJ554053.1 75 4 66 9 Pecari_tajacu_mitochondrial|AP003427.1 207 19 169 38 Pongo_abelii_mitochondrial|X97707.1 25 1 17 8 Saccharina_angustata_mitochondrial|AP011498.1 27 1 18 9 Fucus_vesiculosus_mitochondrion,|AY494079.1 25 1 17 8 Saccharina_japonica_mitochondrial|AP011493.1 69 1 55 14 Leptosira_terrestris_UTEX|EF506945.1 69 1 53 16 Cryptomeria_japonica_chloroplast|AP009377.1 25 1 17 8 Saccharina_ochotensis_mitochondrial|AP011495.1 25 1 17 8 Saccharina_longipedalis_mitochondrial|AP011497.1 30 1 24 6 Cyanophora_paradoxa_strain|HQ849544.1 25 1 17 8 Saccharina_coriacea_mitochondrial|AP011499.1 37 1 27 10 Chromera_velia_strain|HM222967.1 29 1 20 9 Dictyota_dichotoma_mitochondrion,|AY500368.1 24 1 16 8 Desmarestia_viridis_mitochondrion,|AY500367.1 25 1 17 8 Laminaria_digitata_complete|AJ344328.1 71 1 55 16 Rhizanthella_gardneri_plastid,|GQ413967.1 22 1 16 6 Pilayella_littoralis_complete|AJ277126.1 25 1 17 8 Saccharina_diabolica_mitochondrial|AP011496.1 25 1 17 8 Saccharina_religiosa_mitochondrial|AP011494.1 67 1 54 13 Cucurbita_pepo_mitochondrion,|GQ856148.1 81 2 64 17 Cryptomonas_paramecium_strain|GQ358203.1 89 2 65 24 Cyanidium_caldarium_strain|AF022186.2 84 2 64 20 Coccomyxa_sp._C-169|HQ693844.1 86 2 63 23 Cyanidioschyzon_merolae_DBV201|AY286123.1 84 2 67 17 Pycnococcus_provasolii_chloroplast,|FJ493498.1 87 2 63 24 Gracilaria_tenuistipitata_var.|AY673996.1 95 4 74 21 Aureococcus_anophagefferens_strain|GQ231541.1 92 3 69 23 Aureoumbra_lagunensis_strain|GQ231542.1 90 3 68 22 Chlorella_vulgaris_C-27|AB001684.1 90 3 67 23 Cyanidioschyzon_merolae_chloroplast|AB002583.1 82 2 64 18 Cathaya_argyrophylla_chloroplast|AB547400.1 81 2 64 17 Pinus_thunbergii_chloroplast|D17510.1 88 2 72 16 Staurastrum_punctulatum_chloroplast,|AY958085.1 83 2 64 19 Keteleeria_davidiana_chloroplast|AP010820.1 82 2 65 17 Cedrus_deodara_chloroplast|AB480043.1 83 2 65 18 Pinus_nelsonii_chloroplast,|EU998746.4 90 2 69 21 Trifolium_subterraneum_chloroplast,|EU849487.1 86 2 69 17 Medicago_truncatula_chloroplast,|AC093544.8 82 2 65 17 Pinus_koraiensis_chloroplast,|AY228468.2 82 2 65 17 Pinus_gerardiana_chloroplast,|EU998741.4 81 2 64 17 Cicer_arietinum_voucher|EU835853.1 85 2 68 17 Pisum_sativum_cultivar|HM029370.1 81 2 64 17 Pinus_contorta_chloroplast,|EU998740.4 82 2 65 17 Picea_sitchensis_chloroplast,|EU998739.3 78 2 62 16 Pinus_lambertiana_chloroplast,|EU998743.4 83 2 65 18 Pinus_monophylla_chloroplast,|EU998745.4 80 2 62 18 Lathyrus_sativus_cultivar|HM029371.1 83 2 65 18 Pinus_longaeva_chloroplast,|EU998744.3 82 2 65 17 Pinus_krempfii_chloroplast,|EU998742.4 95 2 78 17 Phalaenopsis_aphrodite_subsp.|AY916449.1 68 1 54 14 Huperzia_lucidula_chloroplast,|AY660566.1 93 1 75 18 Guillardia_theta_complete|AF041468.1 33 1 25 8 Toxoplasma_gondii_apicoplast,|U87145.2 96 1 78 18 Rhodomonas_salina_strain|EF508371.1 48 1 37 11 Malawimonas_jakobiformis_mitochondrial|AF295546.1 41 1 33 8 Micromonas_sp._RCC299|FJ858267.1 39 1 33 6 Ostreococcus_tauri_chloroplast,|CR954199.2 39 1 30 9 Eimeria_tenella_apicoplast,|AY217738.1 73 1 58 15 Alveolata_sp._CCMP3155|HM222968.1 89 1 67 22 Heterosigma_akashiwo_strain|EU168190.1 89 1 67 22 Heterosigma_akashiwo_strain|EU168191.1 87 2 66 21 Durinskia_baltica_strain|GU591327.1 97 2 77 20 Paulinella_chromatophora_chromatophore,|CP000815.1 85 2 65 20 Chaetosphaeridium_globosum_chloroplast,|AF494278.1 91 2 70 21 Kryptoperidinium_foliaceum_strain|GU591328.1 86 2 65 21 Phaeodactylum_tricornutum_chloroplast,|EF067920.1 73 2 58 15 Fucus_vesiculosus_complete|FM957154.1 86 2 65 21 Thalassiosira_pseudonana_chloroplast,|EF067921.1 88 2 66 22 Pedinomonas_minor_culture-collection|FJ968740.1 86 2 65 21 Thalassiosira_oceanica_CCMP1005|GU323224.1 72 2 56 16 Ectocarpus_siliculosus_chloroplast,|FP102296.1 76 2 56 20 Odontella_sinensis_complete|Z67753.1 94 2 70 24 Pyramimonas_parkeae_chloroplast,|FJ493499.1 99 4 75 24 Mesostigma_viride_chloroplast|AF166114.1 102 3 79 23 Porphyra_yezoensis_chloroplast|AP006715.1 90 3 67 23 Nephroselmis_olivacea_chloroplast|AF137379.1 101 3 76 25 Chlorokybus_atmophyticus_chloroplast,|DQ422812.2 102 3 79 23 Porphyra_purpurea_chloroplast,|U38804.1 101 3 76 25 Emiliania_huxleyi_strain|AY741371.1 97 3 76 21 Parachlorella_kessleri_culture-collection|FJ968741.1 90 3 69 21 Vaucheria_litorea_chloroplast,|EU912438.1 86 3 66 20 Chara_vulgaris_chloroplast,|DQ229107.1 90 3 63 27 Selaginella_moellendorffii_plastid,|FJ755183.1 86 2 68 18 Cucumis_sativus_chloroplast|AJ970307.1 85 2 68 17 Oenothera_elata_subsp.|AJ271079.3 88 2 70 18 Vitis_vinifera_cultivar|DQ424856.1 87 2 69 18 Nymphaea_alba_chloroplast,|AJ627251.1 86 2 68 18 Cucumis_sativus_chloroplast,|DQ119058.1 86 2 69 17 Cuscuta_gronovii_complete|AM711639.1 101 2 86 15 Zea_mays_complete|X86563.2 86 2 68 18 Fagopyrum_esculentum_subsp.|EU254477.1 86 2 69 17 Cuscuta_obtusiflora_chloroplast,|EU189133.1 87 2 70 17 Nandina_domestica_chloroplast,|DQ923117.1 87 2 69 18 Aethionema_grandiflorum_chloroplast|AP009367.1 88 2 69 19 Gossypium_barbadense_chloroplast|AP009123.1 88 2 70 18 Eucalyptus_grandis_chloroplast,|HM347959.1 106 2 91 15 Zea_mays_cultivar|AY928077.1 62 2 44 18 Jasminum_nudiflorum_chloroplast,|DQ673255.1 91 2 72 19 Illicium_oligandrum_chloroplast,|EF380354.1 75 2 59 16 Pelargonium_x_hortorum|DQ897681.1 91 2 74 17 Oncidium_Gower_Ramsey|GQ324949.1 101 2 86 15 Agrostis_stolonifera_cultivar|EF115543.1 87 2 69 18 Populus_trichocarpa_chloroplast,|EF489041.1 86 2 68 18 Cucumis_sativus_strain|DQ865976.1 80 2 62 18 Equisetum_arvense_chloroplast,|GU191334.1 89 2 70 19 Olea_europaea_cultivar|GU228899.1 86 2 69 17 Phaseolus_vulgaris_cultivar|DQ886273.1 88 2 70 18 Nicotiana_tabacum_chloroplast|Z00044.2 86 2 69 17 Vigna_radiata_cultivar|GQ893027.1 94 2 71 23 Parthenium_argentatum_chloroplast|GU120098.1 89 2 71 18 Panax_ginseng_chloroplast,|AY582139.1 100 2 85 15 Lolium_perenne_complete|AM777385.2 89 2 72 17 Ceratophyllum_demersum_chloroplast,|EF614270.1 87 2 69 18 Populus_alba_chloroplast|AP008956.1 85 2 65 20 Adiantum_capillus-veneris_chloroplast,|AY178864.1 104 2 89 15 Oryza_sativa_Japonica|X15901.1 94 2 77 17 Dioscorea_elephantipes_chloroplast,|EF380353.1 89 2 71 18 Platanus_occidentalis_chloroplast,|DQ923116.1 85 2 68 17 Oenothera_parviflora_chloroplast,|EU262891.1 87 2 69 18 Ipomoea_purpurea_chloroplast,|EU118126.1 89 2 71 18 Anthriscus_cerefolium_chloroplast,|GU456628.1 76 2 57 19 Cycas_taitungensis_chloroplast|AP009339.1 89 2 70 19 Olimarabidopsis_pumila_chloroplast|AP009368.1 104 2 89 15 Oryza_sativa_Indica|AY522329.1 88 2 70 18 Lepidium_virginicum_chloroplast|AP009374.1 94 2 77 17 Chloranthus_spicatus_chloroplast,|EF380352.1 88 2 70 18 Eucalyptus_globulus_subsp.|AY780259.1 86 2 67 19 Lotus_japonicus_chloroplast|AP002983.1 89 2 69 20 Manihot_esculenta_cultivar|EU117376.1 103 2 88 15 Triticum_aestivum_chloroplast|AB042240.3 89 2 69 20 Theobroma_cacao_chloroplast,|HQ336404.1 100 2 85 15 Brachypodium_distachyon_cultivar|EU325680.1 92 2 77 15 Anomochloa_marantoidea_chloroplast,|GQ329703.1 104 2 89 15 Oryza_sativa_Japonica|GU592207.1 93 2 73 20 Pteridium_aquilinum_subsp.|HM535629.1 88 2 70 18 Solanum_lycopersicum_complete|AM087200.3 107 2 92 15 Saccharum_hybrid_cultivar|AP006714.1 89 2 71 18 Daucus_carota_chloroplast,|DQ898156.1 86 2 69 17 Glycine_max_cultivar|DQ317523.1 85 2 66 19 Cheilanthes_lindheimeri_chloroplast,|HM778032.1 91 2 71 20 Fragaria_vesca_subsp.|JF345175.1 88 2 70 18 Smilax_china_plastid,|HM536959.1 88 2 70 18 Crucihimalaya_wallichii_chloroplast|AP009372.1 92 2 75 17 Liriodendron_tulipifera_chloroplast,|DQ899947.1 75 2 60 15 Psilotum_nudum_chloroplast|AP004638.1 88 2 71 17 Ranunculus_macranthus_chloroplast,|DQ359689.1 71 2 55 16 Epifagus_virginiana_chloroplast,|M81884.1 94 2 77 17 Phoenix_dactylifera_chloroplast,|GU811709.2 89 2 72 17 Piper_cenocladum_chloroplast,|DQ887677.1 104 2 89 15 Hordeum_vulgare_subsp.|EF115541.1 87 2 69 18 Cuscuta_exaltata_chloroplast,|EU189132.1 104 2 89 15 Sorghum_bicolor_cultivar|EF115542.1 104 2 89 15 Oryza_sativa_Japonica|AY522330.1 89 2 71 18 Morus_indica_chloroplast,|DQ226511.1 89 2 70 19 Barbarea_verna_chloroplast|AP009370.1 80 2 63 17 Anthoceros_formosae_chloroplast|AB086179.1 76 2 61 15 Selaginella_uncinata_chloroplast|AB197035.2 88 2 70 18 Castanea_mollissima_chloroplast,|HQ336406.1 89 2 70 19 Arabidopsis_thaliana_chloroplast|AP000423.1 92 2 73 19 Drimys_granadensis_chloroplast,|DQ887676.1 89 2 71 18 Buxus_microphylla_chloroplast,|EF380351.1 87 2 69 18 Nuphar_advena_chloroplast,|DQ354691.1 92 2 75 17 Amborella_trichopoda_chloroplast|AJ506156.2 89 2 70 19 Capsella_bursa-pastoris_chloroplast|AP009371.1 91 2 71 20 Helianthus_annuus_cultivar|DQ383815.1 97 2 79 18 Typha_latifolia_chloroplast,|GU195652.1 88 2 70 18 Solanum_tuberosum_cultivar|DQ386163.2 85 2 68 17 Oenothera_glazioviana_chloroplast,|EU262890.1 86 2 68 18 Cucumis_sativus_cultivar|DQ865975.1 83 2 65 18 Angiopteris_evecta_chloroplast,|DQ821119.1 88 2 70 18 Nicotiana_tomentosiformis_chloroplast|AB240139.1 88 2 70 18 Corynocarpus_laevigata_chloroplast,|HQ207704.1 88 2 70 18 Citrus_sinensis_chloroplast,|DQ864733.1 96 2 78 18 Lemna_minor_chloroplast,|DQ400350.1 89 2 69 20 Jatropha_curcas_chloroplast,|FJ695500.1 83 2 67 16 Acorus_calamus_chloroplast,|AJ879453.1 87 2 69 18 Arabis_hirsuta_chloroplast|AP009369.1 88 2 70 18 Nicotiana_sylvestris_chloroplast|AB237912.1 88 2 70 18 Draba_nemorosa_chloroplast|AP009373.1 88 2 70 18 Carica_papaya_chloroplast,|EU431223.1 83 2 67 16 Acorus_americanus_chloroplast,|EU273602.1 103 2 88 15 Coix_lacryma-jobi_chloroplast,|FJ261955.1 106 2 91 15 Bambusa_oldhamii_chloroplast,|FJ970915.1 82 2 63 19 Isoetes_flaccida_chloroplast,|GU191333.1 89 2 71 18 Guizotia_abyssinica_chloroplast,|EU549769.1 88 2 70 18 Lycopersicon_esculentum_cultivar|DQ347959.1 107 2 92 15 Saccharum_hybrid_cultivar|AE009947.2 83 2 63 20 Aneura_mirabilis_chloroplast,|EU043314.1 104 2 89 15 Oryza_nivara_chloroplast|AP006728.1 87 2 69 18 Aethionema_cordifolium_chloroplast|AP009366.1 86 2 69 17 Coffea_arabica_chloroplast,|EF044213.1 89 2 70 19 Alsophila_spinulosa_chloroplast,|FJ556581.1 89 2 71 18 Lactuca_sativa_cultivar|DQ383816.1 87 2 69 18 Cuscuta_reflexa_complete|AM711640.1 86 2 69 17 Solanum_tuberosum_chloroplast,|DQ231562.1 85 2 68 17 Physcomitrella_patens_subsp.|AP005672.1 83 2 66 17 Syntrichia_ruralis_chloroplast,|FJ546412.1 87 2 69 18 Gossypium_hirsutum_cultivar|DQ345959.1 85 2 68 17 Oenothera_biennis_chloroplast,|EU262889.1 78 2 60 18 Marchantia_polymorpha_chloroplast|X04465.1 87 2 71 16 Calycanthus_fertilis_var.|AJ428413.1 87 2 68 19 Oenothera_argillicola_chloroplast,|EU262887.1 106 2 91 15 Dendrocalamus_latiflorus_chloroplast,|FJ970916.1 80 2 66 14 Megaleranthis_saniculifolia_chloroplast,|FJ597983.1 87 2 69 18 Gossypium_thurberi_chloroplast,|GU907100.1 86 2 69 17 Lobularia_maritima_chloroplast|AP009375.1 89 2 71 18 Prunus_persica_chloroplast,|HQ336405.1 88 2 70 18 Atropa_belladonna_complete|AJ316582.1 89 2 71 18 Lactuca_sativa_chloroplast|AP007232.1 86 2 69 17 Spinacia_oleracea_complete|AJ400848.1 89 2 70 19 Solanum_bulbocastanum_cultivar|DQ347958.1 88 2 70 18 Nasturtium_officinale_chloroplast|AP009376.1 69 2 52 17 Trachelium_caeruleum_chloroplast,|EU090187.1 87 3 68 19 Zygnema_circumcarinatum_chloroplast,|AY958086.1 42 1 33 9 Sminthopsis_crassicaudata_mitochondrion,|AY795974.1 38 1 30 8 Sminthopsis_douglasi_mitochondrion|AJ639867.1 27 1 20 7 Ramphotyphlops_braminus_mitochondrion,|DQ343649.1 22 1 20 2 Paretroplus_maculatus_mitochondrial|AP009504.1 43 3 35 8 Tropheus_duboisi_mitochondrial|AP006015.1 48 2 42 6 Oreochromis_sp._KM-2006|AP009126.1 44 2 39 5 Oreochromis_niloticus_mitochondrion,|GU238433.1 47 2 41 6 Oreochromis_niloticus_strain|GU477625.1 45 2 40 5 Oreochromis_niloticus_strain|GU477627.1 45 2 40 5 Oreochromis_niloticus_strain|GU477624.1 44 2 39 5 Oreochromis_aureus_mitochondrion,|GU370125.1 43 2 39 4 Oreochromis_mossambicus_mitochondrion,|AY597335.1 46 2 40 6 Oreochromis_sp._'red|GU477631.1 48 2 42 6 Oreochromis_niloticus_strain|GU477628.1 43 2 37 6 Oreochromis_sp._'red|HM067614.1 46 2 40 6 Oreochromis_niloticus_strain|GU477626.1 60 1 51 9 Megaceros_aenigmaticus_mitochondrion,|EU660574.1 3 1 1 2 Debaryomyces_hansenii_mitochondrion,|DQ508940.1 45 1 34 11 Caenolestes_fuliginosus_complete|AJ508400.1 34 1 29 5 Vulpes_vulpes_complete|AM181037.1 66 1 47 19 Gulo_gulo_complete|AM711901.1 26 1 21 5 Metachirus_nudicaudatus_mitochondrion|AJ639866.1 23 1 17 6 Dromiciops_gliroides_partial|AJ508402.2 39 1 32 7 Mystacina_tuberculata_mitochondrion,|AY960981.1 45 1 38 7 Sus_scrofa_complete|AJ002189.1 27 1 21 6 Tarsius_syrichta_mitochondrial|AB371090.1 38 1 31 7 Sus_scrofa_domestica|AP003428.1 18 1 14 4 Notoryctes_typhlops_mitochondrion|AJ639874.1 39 1 31 8 Potorous_tridactylus_complete|AJ639873.1 39 1 33 6 Myoxus_glis_complete|AJ001562.1 25 1 23 2 Pseudomys_chapmani_mitochondrion,|EU305669.1 33 1 27 6 Leggadina_lakedownensis_mitochondrion,|EU305668.1 36 1 30 6 Tscherskia_triton_mitochondrion,|EU031048.1 20 1 14 6 Tarsipes_rostratus_mitochondrion|AJ639868.1 42 1 29 13 Dasyurus_hallucatus_mitochondrion,|AY795973.1 42 1 35 7 Sus_scrofa_taiwanensis|GU147934.1 23 1 16 7 Distoechurus_pennatus_mitochondrial|AB241052.1 45 1 38 7 Monodelphis_domestica_complete|AJ508398.1 35 1 31 4 Pagophilus_groenlandicus_complete|AM181030.1 34 1 27 7 Nycticebus_coucang_mitochondrial|AJ309867.1 21 1 13 8 Macrotis_lagotis_mitochondrion|AJ639871.1 40 1 35 5 Phoca_sibirica_complete|AM181034.1 38 1 31 7 Lagostrophus_fasciatus_complete|AM262148.1 35 1 31 4 Lemur_catta_mitochondrion|AJ421451.1 19 1 14 5 Tarsius_bancanus_mitochondrion,|AF348159.1 35 1 27 8 Phascogale_tapoatafa_complete|AJ639869.1 47 3 35 12 Balaenoptera_physalus_mitochondrial|X61145.1 39 3 33 6 Nyctereutes_procyonoides_mitochondrion,|GU256221.1 29 2 24 5 Callorhinus_ursinus_complete|AM181016.1 40 2 35 5 Phocarctos_hookeri_complete|AM181019.1 40 2 35 5 Neophoca_cinerea_complete|AM181020.1 38 2 33 5 Hydrurga_leptonyx_complete|AM181026.1 16 2 9 7 Myrmecobius_fasciatus_mitochondrion,|FJ515782.1 39 2 34 5 Arctocephalus_townsendi_complete|AM181021.1 39 2 33 6 Zalophus_californianus_complete|AM181017.1 41 2 36 5 Arctocephalus_pusillus_complete|AM181018.1 51 4 41 10 Echinosorex_gymnura_mitochondrion,|AF348079.1 51 3 44 7 Mirounga_leonina_complete|AM181023.1 48 3 42 6 Cystophora_cristata_complete|AM181028.1 42 2 33 9 Otolemur_crassicaudatus_mitochondrial|AB371093.1 36 2 28 8 Ailurus_fulgens_styani|AB291074.1 48 2 36 12 Balaenoptera_musculus_mitochondrial|X72204.1 33 2 25 8 Ailurus_fulgens_complete|AM711897.1 68 4 57 11 Herpestes_javanicus_mitochondrion,|AY873843.1 82 4 49 33 Martes_zibellina_mitochondrion,|FJ429093.1 39 3 24 15 Varecia_variegata_variegata|AB371089.1 41 2 32 9 Macropus_robustus_complete|Y10524.1 42 2 32 10 Rhinolophus_formosae_mitochondrion,|EU166918.1 43 2 36 7 Dugong_dugon_complete|AJ421723.1 48 2 43 5 Hemitragus_jayakari_mitochondrion,|FJ207523.1 45 2 34 11 Rhinolophus_monoceros_mitochondrial|AF406806.1 49 2 38 11 Rhinolophus_pumilus_mitochondrial|AB061526.1 65 2 57 8 Lynx_rufus_mitochondrion,|GQ979707.3 37 2 28 9 Artibeus_jamaicensis_mitochondrial|AF061340.1 55 3 49 6 Cricetulus_griseus_mitochondrion,|DQ390542.2 65 3 56 9 Cervus_nippon_hortulorum|GU457433.1 57 3 47 10 Soriculus_fumidus_mitochondrion,|AF348081.1 33 3 26 7 Microtus_rossiaemeridionalis_mitochondrion,|DQ015676.1 35 3 27 8 Choloepus_didactylus_mitochondrion,|AY960980.1 52 2 45 7 Eremitalpa_granti_complete|AM904729.1 57 2 48 9 Phacochoerus_africanus_mitochondrion,|DQ409327.1 44 2 37 7 Mammut_americanum_mitochondrion,|EF632344.1 45 2 40 5 Monachus_schauinslandi_complete|AM181022.1 88 6 69 19 Trachypithecus_obscurus_mitochondrion,|AY863425.1 74 6 56 18 Saimiri_sciureus_mitochondrial|AB371091.1 65 6 45 20 Cebus_albifrons_mitochondrial|AJ309866.1 104 5 83 21 Procolobus_badius_mitochondrion,|DQ355301.1 77 5 64 13 Nasalis_larvatus_mitochondrion,|DQ355298.1 69 4 54 15 Lipotes_vexillifer_mitochondrion,|AY789529.1 80 5 66 14 Hyperoodon_ampullatus_complete|AJ554056.1 55 4 48 7 Budorcas_taxicolor_mitochondrion,|FJ006534.1 68 4 60 8 Acinonyx_jubatus_mitochondrion,|AF344830.1 63 4 55 8 Bison_bonasus_mitochondrion,|HM045017.1 62 5 54 8 Procapra_przewalskii_mitochondrion,|GU386355.1 64 5 55 9 Naemorhedus_swinhoei_mitochondrion,|EF558665.1 64 5 57 7 Damaliscus_pygargus_mitochondrion,|FJ207530.1 65 5 57 8 Odobenus_rosmarus_rosmarus|AJ428576.2 50 3 39 11 Physeter_macrocephalus_mitochondrial|AJ277029.2 60 5 47 13 Platanista_minor_complete|AJ554058.1 53 3 47 6 Pantholops_hodgsonii_mitochondrion,|DQ191826.1 62 4 53 9 Galemys_pyrenaicus_mitochondrion,|AY833419.1 64 4 53 11 Pteropus_scapulatus_mitochondrial|AF321050.1 67 4 56 11 Pteropus_dasymallus_mitochondrial|AB042770.1 56 3 49 7 Manis_tetradactyla_complete|AJ421454.1 15 1 12 3 Smaug_warreni_mitochondrial|AB079613.1 85 4 68 17 Colobus_guereza_mitochondrion,|AY863427.1 78 6 14 64 Leishmania_braziliensis_MHOM/BR/75/M2904|FR798995.1 42 1 37 5 Dendrohyrax_dorsalis_complete|AM904727.1 36 1 29 7 Rupicapra_rupicapra_mitochondrion,|FJ207539.1 38 1 35 3 Procavia_capensis_mitochondrial|AB096865.1 45 1 40 5 Spilogale_putorius_complete|AM711898.1 52 1 45 7 Hydropotes_inermis_mitochondrion,|EU315254.1 45 2 37 8 Bubalus_bubalis_breed|AY702618.1 52 3 45 7 Ailuropoda_melanoleuca_mitochondrion,|EF212882.1 61 4 53 8 Arctodus_simus_complete|FM177762.1 54 3 47 7 Bison_bison_isolate|GU947002.1 54 3 47 7 Bison_bison_isolate|GU947004.1 54 3 47 7 Bison_bison_isolate|GU946994.1 54 3 47 7 Bison_bison_isolate|GU947000.1 54 3 47 7 Bison_bison_isolate|GU946998.1 54 3 47 7 Bison_bison_isolate|GU946976.1 54 3 47 7 Bison_bison_isolate|GU946992.1 54 3 47 7 Bison_bison_isolate|GU946988.1 54 3 47 7 Bison_bison_isolate|GU947006.1 54 3 47 7 Bison_bison_isolate|GU947001.1 54 3 47 7 Bison_bison_isolate|GU947003.1 54 3 47 7 Bison_bison_isolate|GU946997.1 51 3 43 8 Giraffa_camelopardalis_mitochondrial|AP003424.1 54 3 47 7 Bison_bison_isolate|GU946999.1 54 3 47 7 Bison_bison_isolate|GU946996.1 54 3 47 7 Bison_bison_isolate|GU946993.1 55 3 47 8 Bos_grunniens_isolate|EF494179.1 54 3 47 7 Bison_bison_isolate|GU947005.1 59 4 52 7 Lama_pacos_complete|Y19184.1 61 4 53 8 Bos_taurus_isolate|HQ184045.1 57 4 50 7 Ovis_vignei_isolate|HM236186.1 61 4 53 8 Bos_taurus_isolate|GU947011.1 60 4 52 8 Bos_taurus_isolate|HQ184044.1 61 4 53 8 Bos_javanicus_mitochondrion,|FJ997262.1 61 4 53 8 Bos_taurus_isolate|GU947015.1 60 4 52 8 Bos_taurus_isolate|HQ184035.1 61 4 53 8 Bos_taurus_isolate|GU947020.1 61 4 53 8 Bos_taurus_isolate|HQ184037.1 61 4 53 8 Bos_taurus_isolate|HQ184033.1 61 4 53 8 Bos_indicus_breed|AY126697.1 61 4 53 8 Bos_taurus_isolate|GU947014.1 61 4 53 8 Bos_taurus_isolate|HQ184038.1 61 4 53 8 Bos_taurus_isolate|GU947016.1 61 4 53 8 Bos_taurus_isolate|GU947018.1 61 4 53 8 Bos_taurus_isolate|GU947010.1 61 4 53 8 Bos_taurus_isolate|HQ184042.1 61 4 53 8 Bos_taurus_isolate|GU947008.1 61 4 53 8 Bos_taurus_isolate|GU947012.1 61 4 53 8 Bos_taurus_isolate|HQ184036.1 61 4 53 8 Bos_taurus_isolate|HQ184034.1 61 4 53 8 Bos_taurus_isolate|GU947013.1 61 4 53 8 Bos_taurus_isolate|HQ184030.1 61 4 53 8 Bos_taurus_isolate|HQ184040.1 61 4 53 8 Bos_taurus_isolate|HQ184032.1 61 4 53 8 Bos_taurus_isolate|HQ184031.1 61 4 53 8 Bos_taurus_mitochondrion,|AY526085.1 61 4 53 8 Bos_taurus_isolate|GU947021.1 61 4 53 8 Bos_primigenius_isolate|GU985279.1 61 4 53 8 Bos_taurus_isolate|GU947007.1 61 4 53 8 Bos_taurus_isolate|GU947017.1 56 4 49 7 Ovis_ammon_isolate|HM236188.1 61 4 53 8 Bos_taurus_isolate|GU947009.1 59 4 51 8 Bos_taurus_isolate|HQ184041.1 57 4 50 7 Ovis_aries_complete|AF010406.1 61 4 53 8 Bos_taurus_isolate|GU947019.1 56 4 47 9 Antilope_cervicapra_mitochondrial|AP003422.1 61 4 53 8 Bos_taurus_isolate|HQ184039.1 61 4 53 8 Bos_taurus_isolate|HQ184043.1 52 3 44 8 Tremarctos_ornatus_mitochondrion,|EF196665.1 51 2 43 8 Trichechus_manatus_complete|AM904728.1 45 2 38 7 Pseudois_nayaur_mitochondrion,|FJ207537.1 57 3 50 7 Rangifer_tarandus_mitochondrial|AB245426.1 55 3 46 9 Odocoileus_virginianus_mitochondrion,|HQ332445.1 55 3 47 8 Elaphodus_cephalophus_mitochondrion,|DQ873526.1 56 3 50 6 Rousettus_aegyptiacus_mitochondrial|AB205183.1 61 3 53 8 Cervus_unicolor_swinhoei|DQ989636.3 59 3 49 10 Thryonomys_swinderianus_complete|AJ301644.1 40 2 37 3 Anoplocapros_lenticularis_mitochondrial|AP009186.1 42 2 37 5 Ornithorhynchus_anatinus_mitochondrial|X83427.1 67 2 54 13 Meles_meles_complete|AM711900.1