Total Overlap F3 F5 Target 87 5 69 18 Durinskia_baltica_strain|GU591327.1 83 4 65 18 Kryptoperidinium_foliaceum_strain|GU591328.1 83 3 67 16 Thalassiosira_pseudonana_chloroplast,|EF067921.1 85 3 65 20 Phaeodactylum_tricornutum_chloroplast,|EF067920.1 83 3 66 17 Thalassiosira_oceanica_CCMP1005|GU323224.1 77 2 62 15 Odontella_sinensis_complete|Z67753.1 77 4 59 18 Cyanidium_caldarium_strain|AF022186.2 43 1 36 7 Reclinomonas_americana_mitochondrion,|AF007261.1 32 1 25 7 Cyanophora_paradoxa_strain|HQ849544.1 83 2 62 21 Zea_mays_subsp.|DQ645536.1 80 2 55 25 Zea_mays_subsp.|DQ645539.1 98 2 82 16 Zea_mays_strain|AY506529.1 33 3 24 9 Ochromonas_danica_mitochondrial|AF287134.1 84 3 67 17 Zea_luxurians_mitochondrion,|DQ645537.1 47 2 40 7 Pleurozia_purpurea_mitochondrion,|FJ999996.2 14 1 12 2 Oreochromis_aureus_mitochondrion,|GU370125.1 14 1 12 2 Oreochromis_niloticus_strain|GU477627.1 47 5 37 10 Neolamprologus_brichardi_mitochondrial|AP006014.1 77 5 13 64 Geochelone_pardalis_voucher|DQ080041.1 52 1 44 8 Citrullus_lanatus_mitochondrion,|GQ856147.1 68 2 57 11 Cucurbita_pepo_mitochondrion,|GQ856148.1 116 7 67 49 Zygnema_circumcarinatum_chloroplast,|AY958086.1 68 3 52 16 Megaceros_aenigmaticus_mitochondrion,|EU660574.1 74 3 55 19 Welwitschia_mirabilis_chloroplast,|EU342371.1 11 3 7 4 Geococcyx_californianus_mitochondrion,|HM640212.1 11 3 7 4 Geococcyx_californianus_mitochondrion,|EU410488.1 11 3 7 4 Synthliboramphus_antiquus_mitochondrial|AP009042.1 11 3 7 4 Eudyptula_minor_mitochondrion,|AF362763.1 9 3 5 4 Arenaria_interpres_mitochondrion,|AY074885.2 10 3 6 4 Eudynamys_taitensis_mitochondrion,|EU410487.1 8 3 5 3 Cathartes_aura_mitochondrion,|AY463690.1 9 2 5 4 Larus_dominicanus_mitochondrion,|AY293619.1 10 1 6 4 Rhea_americana_complete|Y16884.3 11 2 8 3 Haematopus_ater_mitochondrion,|AY074886.2 12 2 8 4 Otis_tarda_mitochondrion,|FJ751803.1 10 2 7 3 Bucorvus_leadbeateri_mitochondrion,|HM640209.1 10 2 7 3 Phoenicopterus_ruber_roseus|EF532932.1 12 2 9 3 Coelorinchus_kishinouyei_mitochondrial|AP002929.1 11 2 8 3 Columba_livia_mitochondrion,|GU908131.1 9 2 6 3 Pterocnemia_pennata_mitochondrion,|AF338709.2 87 4 66 21 Porphyra_yezoensis_chloroplast|AP006715.1 91 4 70 21 Porphyra_purpurea_chloroplast,|U38804.1 77 4 60 17 Rhodomonas_salina_strain|EF508371.1 75 3 57 18 Gracilaria_tenuistipitata_var.|AY673996.1 65 2 56 9 Jasminum_nudiflorum_chloroplast,|DQ673255.1 46 2 39 7 Bigelowiella_natans_plastid,|DQ851108.1 69 5 57 12 Trachelium_caeruleum_chloroplast,|EU090187.1 69 4 59 10 Aneura_mirabilis_chloroplast,|EU043314.1 62 3 51 11 Psilotum_nudum_chloroplast|AP004638.1 61 2 49 12 Epifagus_virginiana_chloroplast,|M81884.1 58 2 45 13 Rhizanthella_gardneri_plastid,|GQ413967.1 50 2 42 8 Monsonia_speciosa_plastid,|HM125538.1 76 3 66 10 Medicago_truncatula_chloroplast,|AC093544.8 77 3 64 13 Trifolium_subterraneum_chloroplast,|EU849487.1 75 3 63 12 Pisum_sativum_cultivar|HM029370.1 65 3 55 10 Lathyrus_sativus_cultivar|HM029371.1 71 2 59 12 Staurastrum_punctulatum_chloroplast,|AY958085.1 37 3 28 9 Cafeteria_roenbergensis_mitochondrial|AF193903.1 6 1 2 4 Dictyostelium_fasciculatum_strain|EU275727.1 5 1 3 2 Polysphondylium_pallidum_mitochondrion|AY700145.1 26 1 18 8 Stigeoclonium_helveticum_strain|DQ630521.1 69 1 65 4 Festuca_arundinacea_cultivar|FJ466687.2 56 1 45 11 Gnetum_parvifolium_chloroplast|AP009569.1 54 1 46 8 Ephedra_equisetina_chloroplast|AP010819.1 74 1 64 10 Megaleranthis_saniculifolia_chloroplast,|FJ597983.1 51 1 44 7 Brassica_napus_strain|GQ861354.1 73 1 56 17 Cyanophora_paradoxa_cyanelle,|U30821.1 43 2 32 11 Eimeria_tenella_apicoplast,|AY217738.1 101 3 59 42 Selaginella_moellendorffii_plastid,|FJ755183.1 75 2 64 11 Ranunculus_macranthus_chloroplast,|DQ359689.1 65 2 52 13 Huperzia_lucidula_chloroplast,|AY660566.1 71 2 60 11 Angiopteris_evecta_chloroplast,|DQ821119.1 79 2 67 12 Nymphaea_alba_chloroplast,|AJ627251.1 76 2 64 12 Cucumis_sativus_chloroplast,|DQ119058.1 67 2 56 11 Cuscuta_gronovii_complete|AM711639.1 77 2 65 12 Fagopyrum_esculentum_subsp.|EU254477.1 68 2 57 11 Cuscuta_obtusiflora_chloroplast,|EU189133.1 79 2 67 12 Lactuca_sativa_cultivar|DQ383816.1 80 2 67 13 Aethionema_grandiflorum_chloroplast|AP009367.1 80 2 65 15 Gossypium_barbadense_chloroplast|AP009123.1 80 2 67 13 Eucalyptus_grandis_chloroplast,|HM347959.1 64 2 54 10 Geranium_palmatum_plastid,|HM125537.1 105 2 94 11 Zea_mays_cultivar|AY928077.1 93 2 82 11 Brachypodium_distachyon_cultivar|EU325680.1 82 2 65 17 Nephroselmis_olivacea_chloroplast|AF137379.1 84 2 68 16 Paulinella_chromatophora_chromatophore,|CP000815.1 71 2 57 14 Pedinomonas_minor_culture-collection|FJ968740.1 62 2 55 7 Pelargonium_x_hortorum|DQ897681.1 86 2 75 11 Oncidium_Gower_Ramsey|GQ324949.1 98 2 87 11 Agrostis_stolonifera_cultivar|EF115543.1 77 2 63 14 Populus_trichocarpa_chloroplast,|EF489041.1 69 2 56 13 Chaetosphaeridium_globosum_chloroplast,|AF494278.1 72 2 59 13 Equisetum_arvense_chloroplast,|GU191334.1 86 2 75 11 Phalaenopsis_aphrodite_subsp.|AY916449.1 76 2 62 14 Parachlorella_kessleri_culture-collection|FJ968741.1 74 2 62 12 Phaseolus_vulgaris_cultivar|DQ886273.1 79 2 67 12 Nicotiana_tabacum_chloroplast|Z00044.2 75 2 63 12 Cuscuta_reflexa_complete|AM711640.1 73 2 61 12 Vigna_radiata_cultivar|GQ893027.1 85 2 66 19 Parthenium_argentatum_chloroplast|GU120098.1 80 2 67 13 Panax_ginseng_chloroplast,|AY582139.1 99 2 88 11 Lolium_perenne_complete|AM777385.2 83 2 65 18 Oenothera_argillicola_chloroplast,|EU262887.1 79 2 67 12 Ceratophyllum_demersum_chloroplast,|EF614270.1 79 2 63 16 Populus_alba_chloroplast|AP008956.1 67 2 54 13 Adiantum_capillus-veneris_chloroplast,|AY178864.1 80 2 66 14 Piper_cenocladum_chloroplast,|DQ887677.1 98 2 86 12 Oryza_sativa_Japonica|X15901.1 82 2 69 13 Arabis_hirsuta_chloroplast|AP009369.1 85 2 74 11 Dioscorea_elephantipes_chloroplast,|EF380353.1 88 2 76 12 Lemna_minor_chloroplast,|DQ400350.1 79 2 66 13 Platanus_occidentalis_chloroplast,|DQ923116.1 76 2 64 12 Cucumis_sativus_strain|DQ865976.1 77 2 66 11 Oenothera_parviflora_chloroplast,|EU262891.1 72 2 58 14 Alsophila_spinulosa_chloroplast,|FJ556581.1 79 2 67 12 Anthriscus_cerefolium_chloroplast,|GU456628.1 79 2 64 15 Chlorokybus_atmophyticus_chloroplast,|DQ422812.2 82 2 68 14 Olimarabidopsis_pumila_chloroplast|AP009368.1 98 2 86 12 Oryza_sativa_Indica|AY522329.1 77 2 60 17 Fucus_vesiculosus_complete|FM957154.1 81 2 68 13 Lepidium_virginicum_chloroplast|AP009374.1 85 2 73 12 Chloranthus_spicatus_chloroplast,|EF380352.1 81 2 67 14 Eucalyptus_globulus_subsp.|AY780259.1 72 2 59 13 Lotus_japonicus_chloroplast|AP002983.1 84 2 65 19 Manihot_esculenta_cultivar|EU117376.1 100 2 88 12 Triticum_aestivum_chloroplast|AB042240.3 84 2 65 19 Theobroma_cacao_chloroplast,|HQ336404.1 76 2 64 12 Cucumis_sativus_chloroplast|AJ970307.1 78 2 66 12 Anomochloa_marantoidea_chloroplast,|GQ329703.1 71 2 59 12 Pteridium_aquilinum_subsp.|HM535629.1 80 2 68 12 Solanum_lycopersicum_complete|AM087200.3 97 2 86 11 Oryza_nivara_chloroplast|AP006728.1 103 2 92 11 Saccharum_hybrid_cultivar|AP006714.1 78 2 67 11 Daucus_carota_chloroplast,|DQ898156.1 74 2 62 12 Glycine_max_cultivar|DQ317523.1 77 2 66 11 Oenothera_elata_subsp.|AJ271079.3 81 2 65 16 Fragaria_vesca_subsp.|JF345175.1 79 2 67 12 Crucihimalaya_wallichii_chloroplast|AP009372.1 83 2 71 12 Liriodendron_tulipifera_chloroplast,|DQ899947.1 79 2 66 13 Vitis_vinifera_cultivar|DQ424856.1 87 2 76 11 Phoenix_dactylifera_chloroplast,|GU811709.2 76 2 65 11 Nandina_domestica_chloroplast,|DQ923117.1 97 2 86 11 Hordeum_vulgare_subsp.|EF115541.1 75 2 63 12 Cuscuta_exaltata_chloroplast,|EU189132.1 100 2 89 11 Sorghum_bicolor_cultivar|EF115542.1 73 2 58 15 Heterosigma_akashiwo_strain|EU168190.1 98 2 86 12 Oryza_sativa_Japonica|AY522330.1 80 2 67 13 Morus_indica_chloroplast,|DQ226511.1 81 2 68 13 Barbarea_verna_chloroplast|AP009370.1 67 2 55 12 Selaginella_uncinata_chloroplast|AB197035.2 80 2 68 12 Castanea_mollissima_chloroplast,|HQ336406.1 80 2 68 12 Arabidopsis_thaliana_chloroplast|AP000423.1 85 2 72 13 Drimys_granadensis_chloroplast,|DQ887676.1 83 2 70 13 Illicium_oligandrum_chloroplast,|EF380354.1 80 2 67 13 Buxus_microphylla_chloroplast,|EF380351.1 79 2 66 13 Nuphar_advena_chloroplast,|DQ354691.1 84 2 72 12 Amborella_trichopoda_chloroplast|AJ506156.2 86 2 66 20 Helianthus_annuus_cultivar|DQ383815.1 92 2 79 13 Typha_latifolia_chloroplast,|GU195652.1 80 2 68 12 Solanum_tuberosum_cultivar|DQ386163.2 101 2 90 11 Bambusa_oldhamii_chloroplast,|FJ970915.1 77 2 66 11 Oenothera_glazioviana_chloroplast,|EU262890.1 76 2 64 12 Cucumis_sativus_cultivar|DQ865975.1 71 2 57 14 Emiliania_huxleyi_strain|AY741371.1 79 2 66 13 Corynocarpus_laevigata_chloroplast,|HQ207704.1 78 2 66 12 Olea_europaea_cultivar|GU228899.1 76 2 64 12 Citrus_sinensis_chloroplast,|DQ864733.1 78 2 65 13 Gossypium_thurberi_chloroplast,|GU907100.1 84 2 64 20 Jatropha_curcas_chloroplast,|FJ695500.1 79 2 65 14 Acorus_calamus_chloroplast,|AJ879453.1 74 2 53 21 Cycas_taitungensis_chloroplast|AP009339.1 98 2 86 12 Oryza_sativa_Japonica|GU592207.1 79 2 67 12 Nicotiana_sylvestris_chloroplast|AB237912.1 66 2 54 12 Cheilanthes_lindheimeri_chloroplast,|HM778032.1 83 2 69 14 Draba_nemorosa_chloroplast|AP009373.1 79 2 67 12 Carica_papaya_chloroplast,|EU431223.1 77 2 65 12 Acorus_americanus_chloroplast,|EU273602.1 104 2 93 11 Coix_lacryma-jobi_chloroplast,|FJ261955.1 77 2 62 15 Mesostigma_viride_chloroplast|AF166114.1 78 2 60 18 Isoetes_flaccida_chloroplast,|GU191333.1 80 2 67 13 Guizotia_abyssinica_chloroplast,|EU549769.1 74 2 56 18 Ectocarpus_siliculosus_chloroplast,|FP102296.1 80 2 68 12 Lycopersicon_esculentum_cultivar|DQ347959.1 103 2 92 11 Saccharum_hybrid_cultivar|AE009947.2 80 2 68 12 Capsella_bursa-pastoris_chloroplast|AP009371.1 81 2 68 13 Aethionema_cordifolium_chloroplast|AP009366.1 78 2 66 12 Coffea_arabica_chloroplast,|EF044213.1 84 2 65 19 Vaucheria_litorea_chloroplast,|EU912438.1 75 2 63 12 Spinacia_oleracea_complete|AJ400848.1 75 2 63 12 Ipomoea_purpurea_chloroplast,|EU118126.1 74 2 64 10 Solanum_tuberosum_chloroplast,|DQ231562.1 82 2 67 15 Nicotiana_tomentosiformis_chloroplast|AB240139.1 77 2 61 16 Physcomitrella_patens_subsp.|AP005672.1 79 2 63 16 Syntrichia_ruralis_chloroplast,|FJ546412.1 77 2 65 12 Gossypium_hirsutum_cultivar|DQ345959.1 77 2 66 11 Oenothera_biennis_chloroplast,|EU262889.1 81 2 60 21 Chara_vulgaris_chloroplast,|DQ229107.1 73 2 55 18 Marchantia_polymorpha_chloroplast|X04465.1 75 2 61 14 Pyramimonas_parkeae_chloroplast,|FJ493499.1 101 2 90 11 Dendrocalamus_latiflorus_chloroplast,|FJ970916.1 77 2 65 12 Lobularia_maritima_chloroplast|AP009375.1 77 2 66 11 Prunus_persica_chloroplast,|HQ336405.1 80 2 68 12 Solanum_bulbocastanum_cultivar|DQ347958.1 73 2 58 15 Heterosigma_akashiwo_strain|EU168191.1 79 2 67 12 Lactuca_sativa_chloroplast|AP007232.1 80 2 68 12 Atropa_belladonna_complete|AJ316582.1 81 2 68 13 Nasturtium_officinale_chloroplast|AP009376.1 70 3 56 14 Guillardia_theta_complete|AF041468.1 61 3 47 14 Cryptomeria_japonica_chloroplast|AP009377.1 76 3 58 18 Aureoumbra_lagunensis_strain|GQ231542.1 72 3 55 17 Aureococcus_anophagefferens_strain|GQ231541.1 70 2 56 14 Cathaya_argyrophylla_chloroplast|AB547400.1 67 2 57 10 Keteleeria_davidiana_chloroplast|AP010820.1 62 2 52 10 Erodium_texanum_plastid,|HM125536.1 69 2 58 11 Pinus_thunbergii_chloroplast|D17510.1 79 2 62 17 Coccomyxa_sp._C-169|HQ693844.1 67 2 57 10 Cedrus_deodara_chloroplast|AB480043.1 68 2 58 10 Pinus_nelsonii_chloroplast,|EU998746.4 69 2 58 11 Pinus_koraiensis_chloroplast,|AY228468.2 71 2 57 14 Pycnococcus_provasolii_chloroplast,|FJ493498.1 69 2 58 11 Pinus_gerardiana_chloroplast,|EU998741.4 69 2 60 9 Cicer_arietinum_voucher|EU835853.1 68 2 58 10 Pinus_contorta_chloroplast,|EU998740.4 69 2 57 12 Picea_sitchensis_chloroplast,|EU998739.3 35 2 28 7 Chromera_velia_strain|HM222967.1 70 2 59 11 Pinus_monophylla_chloroplast,|EU998745.4 60 2 51 9 Erodium_carvifolium_chloroplast,|HQ713469.1 68 2 58 10 Pinus_longaeva_chloroplast,|EU998744.3 69 2 58 11 Pinus_krempfii_chloroplast,|EU998742.4 67 3 54 13 Cryptomonas_paramecium_strain|GQ358203.1 79 3 62 17 Cyanidioschyzon_merolae_DBV201|AY286123.1 80 3 63 17 Cyanidioschyzon_merolae_chloroplast|AB002583.1 8 1 5 3 Egretta_eulophotes_mitochondrion,|EU072995.1 12 1 7 5 Dasyurus_hallucatus_mitochondrion,|AY795973.1 22 1 17 5 Heterosigma_akashiwo_isolate|GQ222227.1 31 1 26 5 Phytophthora_infestans_haplotype|AY898627.1 30 1 25 5 Phytophthora_infestans_haplotype|AY898628.1 18 1 13 5 Plasmodium_falciparum_complete|X95275.2 23 1 18 5 Chattonella_marina_mitochondrial|AB546636.1 31 1 26 5 Phytophthora_infestans_haplotype|AY894835.1 32 1 26 6 Phytophthora_ramorum_mitochondrion,|DQ832718.1 29 1 24 5 Phytophthora_infestans_mitochondrion,|U17009.2 26 1 20 6 Chrysodidymus_synuroideus_mitochondrion,|AF222718.1 32 1 26 6 Pythium_ultimum_culture-collection|GU138662.1 32 1 26 6 Pythium_ultimum_culture-collection|GU138663.1 30 1 25 5 Saprolegnia_ferax_strain|AY534144.1 35 2 27 8 Phytophthora_sojae_mitochondrion,|DQ832717.1 81 2 69 12 Calycanthus_fertilis_var.|AJ428413.1 29 1 22 7 Saccharina_angustata_mitochondrial|AP011498.1 27 1 20 7 Fucus_vesiculosus_mitochondrion,|AY494079.1 31 1 22 9 Saccharina_japonica_mitochondrial|AP011493.1 31 1 22 9 Saccharina_ochotensis_mitochondrial|AP011495.1 31 1 22 9 Saccharina_longipedalis_mitochondrial|AP011497.1 6 1 4 2 Thalassiosira_pseudonana_mitochondrion,|DQ186202.1 49 1 40 9 Chaetosphaeridium_globosum_mitochondrial|AF494279.1 28 1 22 6 Saccharina_coriacea_mitochondrial|AP011499.1 29 1 22 7 Laminaria_digitata_complete|AJ344328.1 48 1 37 11 Chara_vulgaris_mitochondrion,|AY267353.1 26 1 19 7 Desmarestia_viridis_mitochondrion,|AY500367.1 31 1 22 9 Saccharina_diabolica_mitochondrial|AP011496.1 31 1 22 9 Saccharina_religiosa_mitochondrial|AP011494.1 44 1 36 8 Marchantia_polymorpha_mitochondrion,|M68929.1 10 1 7 3 Micromonas_sp._RCC299|FJ859351.1 56 1 43 13 Leptosira_terrestris_UTEX|EF506945.1 84 1 65 19 Chlorella_vulgaris_C-27|AB001684.1 98 1 89 9 Zea_mays_complete|X86563.2 76 1 58 18 Anthoceros_formosae_chloroplast|AB086179.1 55 1 47 8 Alveolata_sp._CCMP3155|HM222968.1 81 2 63 18 Smilax_china_plastid,|HM536959.1 25 1 15 10 Floydiella_terrestris_culture-collection|GU196268.1 18 1 12 6 Monomastix_sp._OKE-1|FJ493497.1 76 1 39 37 Chlorokybus_atmophyticus_strain|EF463011.1 36 1 14 22 Dunaliella_salina_strain|GQ250046.1 25 1 20 5 Oltmannsiellopsis_viridis_chloroplast,|DQ291132.1 198 29 63 135 Leishmania_braziliensis_MHOM/BR/75/M2904|FR798995.1 53 12 34 19 Gallid_herpesvirus_2|AY510475.1 189 14 131 58 Zea_perennis_mitochondrion,|DQ645538.1 224 45 147 77 Homo_sp._Altai|FN673705.1 224 45 147 77 Homo_sp._Altai|FR695060.1 210 27 153 57 Pan_troglodytes_verus|GU112739.1 194 25 143 51 Pan_troglodytes_mitochondrial|D38113.1 199 24 150 49 Pan_troglodytes_troglodytes|GU112738.1 21 1 15 6 Bos_taurus_isolate|HQ184045.1 21 1 15 6 Bos_taurus_isolate|GU947011.1 21 1 15 6 Bos_taurus_isolate|GU947013.1 23 1 16 7 Elephantulus_sp._VB001|AB096867.1 17 1 15 2 Martes_flavigula_mitochondrion,|FJ719367.1 20 1 14 6 Vicugna_vicugna_isolate|FJ456892.1 21 1 15 6 Bos_javanicus_mitochondrion,|FJ997262.1 21 1 15 6 Bos_taurus_isolate|GU947015.1 20 1 17 3 Rousettus_aegyptiacus_mitochondrial|AB205183.1 20 1 14 6 Ovis_vignei_isolate|HM236186.1 21 1 15 6 Bos_taurus_isolate|HQ184035.1 8 1 7 1 Bufoceratias_thele_mitochondrial|AB282841.1 15 1 11 4 Phocarctos_hookeri_complete|AM181019.1 22 1 17 5 Cervus_elaphus_yarkandensis|GU457435.1 22 1 16 6 Microtus_kikuchii_mitochondrion,|AF348082.1 18 1 16 2 Muntiacus_reevesi_mitochondrion,|AF527537.1 21 1 14 7 Lama_pacos_complete|Y19184.1 21 1 15 6 Bos_taurus_isolate|HQ184031.1 16 1 12 4 Phoca_hispida_complete|AM181036.1 21 1 15 6 Bos_taurus_isolate|HQ184037.1 10 1 8 2 Sminthopsis_crassicaudata_mitochondrion,|AY795974.1 25 1 20 5 Panthera_tigris_amoyensis|HM589214.1 8 1 6 2 Ictalurus_punctatus_mitochondrion,|AF482987.1 17 1 13 4 Mogera_wogura_mitochondrial|AB099482.1 14 1 10 4 Arctocephalus_forsteri_mitochondrion,|AF513820.1 17 1 13 4 Neophoca_cinerea_complete|AM181020.1 21 1 15 6 Bos_taurus_isolate|HQ184033.1 11 1 9 2 Rattus_leucopus_isolate|GU570659.1 19 1 16 3 Odobenus_rosmarus_rosmarus|AJ428576.2 18 1 11 7 Eubalaena_australis_mitochondrial|AP006473.1 16 1 11 5 Orcaella_heinsohni_isolate|JF339977.1 23 1 17 6 Lynx_rufus_mitochondrion,|GQ979707.3 21 1 14 7 Hemitragus_jemlahicus_mitochondrion,|FJ207531.1 8 1 7 1 Acanthurus_lineatus_mitochondrion,|EU273284.2 14 1 11 3 Cuon_alpinus_mitochondrion,|GU063864.1 19 1 13 6 Bison_bison_isolate|GU947002.1 19 1 13 6 Bison_bison_isolate|GU947004.1 20 1 15 5 Delphinus_capensis_mitochondrion,|EU557094.1 11 1 8 3 Loxodonta_africana_complete|AJ224821.1 21 1 16 5 Dugong_dugon_complete|AJ421723.1 15 1 11 4 Phoca_vitulina_mitochondrial|X63726.1 19 1 13 6 Bison_bison_isolate|GU946994.1 19 1 13 6 Bison_bison_isolate|GU947000.1 8 1 7 1 Clinocottus_analis_mitochondrion,|FJ848374.1 10 1 7 3 Potorous_tridactylus_complete|AJ639873.1 19 1 13 6 Bison_bison_isolate|GU947006.1 19 1 13 6 Bison_bison_isolate|GU946997.1 19 1 13 6 Bison_bison_isolate|GU946998.1 21 1 15 6 Bos_indicus_breed|AY126697.1 27 1 19 8 Herpestes_javanicus_mitochondrion,|AY873843.1 23 1 18 5 Castor_canadensis_complete|FR691684.1 9 1 8 1 Diagramma_pictum_mitochondrial|AP009167.1 19 1 13 6 Bison_bison_isolate|GU946986.1 19 1 13 6 Bison_bison_isolate|GU946990.1 17 1 14 3 Manis_tetradactyla_complete|AJ421454.1 19 1 13 6 Bison_bison_isolate|GU946976.1 19 1 13 6 Bison_bison_isolate|GU946992.1 22 1 16 6 Procapra_przewalskii_mitochondrion,|GU386355.1 8 1 7 1 Sardinops_melanostictus_mitochondrial|AB032554.1 22 1 19 3 Pteropus_scapulatus_mitochondrial|AF321050.1 28 1 22 6 Panthera_pardus_mitochondrion,|EF551002.1 19 1 13 6 Bison_bison_isolate|GU946996.1 26 1 16 10 Hippopotamus_amphibius_complete|AJ010957.1 19 1 13 6 Bison_bison_isolate|GU946982.1 18 1 15 3 Cervus_elaphus_xanthopygus|GU457434.1 21 1 15 6 Bos_taurus_isolate|GU947014.1 28 1 20 8 Ovibos_moschatus_mitochondrion,|FJ207536.1 16 1 13 3 Martes_pennanti_haplotype|GU121228.1 20 1 17 3 Cervus_nippon_yesoensis|AB210267.2 19 1 13 6 Bison_bison_isolate|GU946988.1 21 1 15 6 Bos_taurus_isolate|GU947016.1 21 1 15 6 Bos_taurus_isolate|GU947018.1 21 1 13 8 Lipotes_vexillifer_mitochondrion,|AY789529.1 24 1 19 5 Panthera_tigris_mitochondrion,|EF551003.1 19 1 13 6 Martes_pennanti_haplotype|GU121230.1 19 1 12 7 Eubalaena_japonica_mitochondrial|AP006474.1 16 1 13 3 Martes_pennanti_haplotype|GU121232.1 21 1 15 6 Bos_taurus_isolate|HQ184038.1 16 1 12 4 Ammotragus_lervia_mitochondrion,|EF466060.1 24 1 19 5 Panthera_tigris_amoyensis|HM589215.1 16 1 13 3 Martes_pennanti_haplotype|GU121236.1 14 1 11 3 Rattus_lutreolus_isolate|GU570661.1 22 1 19 3 Pteropus_dasymallus_mitochondrial|AB042770.1 15 1 13 2 Martes_pennanti_haplotype|GU121234.1 21 1 16 5 Cervus_eldi_mitochondrion,|HM138200.1 27 1 21 6 Uncia_uncia_mitochondrion,|EF551004.1 18 1 14 4 Pontoporia_blainvillei_complete|AJ554060.1 21 1 15 6 Bos_taurus_isolate|GU947010.1 21 1 15 6 Bos_taurus_isolate|GU947008.1 21 1 15 6 Bos_taurus_isolate|GU947012.1 21 1 17 4 Meles_meles_complete|AM711900.1 29 1 21 8 Naemorhedus_caudatus_mitochondrion,|FJ469673.1 20 1 14 6 Pantholops_hodgsonii_mitochondrion,|DQ191826.1 15 1 13 2 Nyctereutes_procyonoides_mitochondrion,|GU256221.1 20 1 16 4 Damaliscus_pygargus_mitochondrion,|FJ207530.1 23 1 18 5 Felis_catus_mitochondrion,|U20753.1 17 1 10 7 Physeter_macrocephalus_mitochondrial|AJ277029.2 21 1 17 4 Cricetulus_griseus_mitochondrion,|DQ390542.2 6 1 5 1 Brachyhypopomus_pinnicaudatus_mitochondrial|AP011570.1 24 1 19 5 Cervus_nippon_taiouanus|DQ985076.1 21 1 15 6 Bos_taurus_isolate|HQ184036.1 22 1 16 6 Neofelis_nebulosa_mitochondrion,|DQ257669.1 21 1 15 6 Bos_taurus_isolate|HQ184034.1 20 1 15 5 Mirounga_leonina_complete|AM181023.1 20 1 15 5 Budorcas_taxicolor_mitochondrion,|FJ006534.1 21 1 15 6 Bos_taurus_isolate|GU947020.1 15 1 13 2 Pagophilus_groenlandicus_complete|AM181030.1 21 1 15 6 Bos_taurus_isolate|HQ184030.1 21 1 15 6 Bos_taurus_isolate|HQ184040.1 20 1 13 7 Balaena_mysticetus_complete|AJ554051.1 61 1 21 40 Martes_zibellina_mitochondrion,|FJ429093.1 26 1 21 5 Cervus_nippon_hortulorum|GU457433.1 24 1 16 8 Inia_geoffrensis_complete|AJ554059.1 21 1 16 5 Cervus_elaphus_mitochondrial|AB245427.2 12 1 9 3 Anoplocapros_lenticularis_mitochondrial|AP009186.1 21 1 15 6 Bos_taurus_isolate|HQ184032.1 21 1 15 6 Bos_taurus_isolate|HQ184044.1 21 1 15 6 Bos_taurus_isolate|HQ184042.1 6 1 5 1 Oneirodes_thompsoni_mitochondrial|AB282843.1 20 1 16 4 Phocoena_phocoena_complete|AJ554063.1 7 1 6 1 Acanthurus_leucosternon_mitochondrion,|EU136032.1 7 1 5 2 Sminthopsis_douglasi_mitochondrion|AJ639867.1 25 1 18 7 Soriculus_fumidus_mitochondrion,|AF348081.1 18 1 15 3 Cervus_nippon_centralis|AB211429.1 13 1 10 3 Echinosorex_gymnura_mitochondrion,|AF348079.1 11 1 8 3 Microtus_rossiaemeridionalis_mitochondrion,|DQ015676.1 18 1 14 4 Odocoileus_virginianus_mitochondrion,|HQ332445.1 8 1 7 1 Diceratias_pileatus_mitochondrial|AB282842.1 21 1 15 6 Bos_taurus_mitochondrion,|AY526085.1 19 1 13 6 Bison_bison_isolate|GU947005.1 23 1 16 7 Kogia_breviceps_complete|AJ554055.1 13 1 9 4 Monodelphis_domestica_complete|AJ508398.1 18 1 14 4 Chrysochloris_asiatica_mitochondrial|AB096866.1 21 1 16 5 Oryctolagus_cuniculus_complete|AJ001588.1 24 1 19 5 Muntiacus_reevesi_micrurus|EF035447.1 19 1 13 6 Bison_bison_isolate|GU947001.1 13 1 10 3 Rattus_praetor_isolate|EU273708.1 23 1 17 6 Rangifer_tarandus_mitochondrial|AB245426.1 17 1 13 4 Muntiacus_crinifrons_mitochondrion,|AY239042.1 10 1 7 3 Mammuthus_primigenius_mitochondrion,|DQ188829.2 10 1 7 3 Elephas_maximus_mitochondrion,|DQ316068.1 18 1 13 5 Pseudois_nayaur_mitochondrion,|FJ207537.1 22 1 15 7 Colobus_guereza_mitochondrion,|AY863427.1 23 1 17 6 Naemorhedus_swinhoei_mitochondrion,|EF558665.1 8 1 7 1 Nothobranchius_furzeri_strain|EU650204.1 17 1 12 5 Giraffa_camelopardalis_mitochondrial|AP003424.1 15 1 11 4 Melursus_ursinus_mitochondrion,|EF196662.1 20 1 17 3 Arctodus_simus_complete|FM177762.1 17 1 13 4 Arctocephalus_townsendi_complete|AM181021.1 20 1 17 3 Cervus_nippon_yakushimae|AB218689.1 17 1 13 4 Elaphodus_cephalophus_mitochondrion,|DQ873526.1 11 1 9 2 Tylochromis_polylepis_mitochondrial|AP009509.1 26 1 20 6 Acinonyx_jubatus_mitochondrion,|AF344830.1 20 1 15 5 Balaenoptera_acutorostrata_complete|AJ554054.1 19 1 13 6 Bison_bison_isolate|GU947003.1 25 1 19 6 Eschrichtius_robustus_complete|AJ554053.1 19 1 13 6 Bison_bison_isolate|GU946995.1 14 1 10 4 Rupicapra_pyrenaica_mitochondrion,|FJ207538.1 21 1 15 6 Bos_taurus_isolate|GU947021.1 21 1 15 6 Bos_primigenius_isolate|GU985279.1 19 1 13 6 Bison_bison_isolate|GU946989.1 12 1 9 3 Mammut_americanum_mitochondrion,|EF632344.1 19 1 15 4 Urotrichus_talpoides_mitochondrial|AB099483.1 23 1 15 8 Lama_guanicoe_mitochondrion,|EU681954.1 19 1 13 6 Bison_bison_isolate|GU946987.1 15 1 11 4 Rattus_exulans_isolate|EU273709.1 10 1 9 1 Melanotaenia_lacustris_mitochondrial|AP004419.1 8 1 7 1 Cromeria_nilotica_mitochondrial|AP011560.1 26 1 19 7 Platanista_minor_complete|AJ554058.1 15 1 13 2 Lutra_lutra_mitochondrion,|FJ236015.1 19 1 14 5 Procyon_lotor_mitochondrial|AB297804.1 19 1 13 6 Bison_bison_isolate|GU946999.1 19 1 13 6 Bison_bison_isolate|GU946991.1 19 1 13 6 Bison_bison_isolate|GU946993.1 19 1 15 4 Bos_grunniens_isolate|EF494179.1 19 1 15 4 Galemys_pyrenaicus_mitochondrion,|AY833419.1 22 1 17 5 Balaenoptera_bonaerensis_mitochondrial|AP006466.1 6 1 5 1 Biwia_zezera_mitochondrial|AB250107.1 18 1 14 4 Phoca_sibirica_complete|AM181034.1 14 1 10 4 Eumetopias_jubatus_complete|AJ428578.2 21 1 15 6 Bos_taurus_isolate|GU947017.1 17 1 13 4 Macroscelides_proboscideus_complete|AJ421452.1 26 1 20 6 Naemorhedus_griseus_mitochondrion,|FJ207532.1 19 1 13 6 Ovis_ammon_isolate|HM236188.1 21 1 15 6 Bos_taurus_isolate|GU947009.1 23 1 18 5 Pecari_tajacu_mitochondrial|AP003427.1 16 1 13 3 Martes_pennanti_haplotype|GU121235.1 18 1 14 4 Muntiacus_muntjak_mitochondrion,|AY225986.1 21 1 15 6 Bos_taurus_isolate|GU947007.1 15 1 11 4 Arctocephalus_pusillus_complete|AM181018.1 20 1 14 6 Ovis_aries_complete|AF010406.1 21 1 15 6 Bos_taurus_isolate|GU947019.1 21 1 16 5 Monachus_schauinslandi_complete|AM181022.1 17 1 11 6 Proedromys_liangshanensis_mitochondrion,|FJ463038.1 20 1 14 6 Antilope_cervicapra_mitochondrial|AP003422.1 16 1 13 3 Martes_pennanti_haplotype|GU121231.1 21 1 15 6 Bos_taurus_isolate|HQ184039.1 17 1 13 4 Phoca_largha_complete|AM181031.1 15 1 11 4 Mystacina_tuberculata_mitochondrion,|AY960981.1 16 1 13 3 Martes_pennanti_haplotype|GU121237.1 15 1 13 2 Martes_pennanti_haplotype|GU121233.1 21 1 15 6 Bos_taurus_isolate|HQ184043.1 21 1 15 6 Bison_bonasus_mitochondrion,|HM045017.1 21 1 16 5 Cervus_unicolor_swinhoei|DQ989636.3 19 1 16 3 Cystophora_cristata_complete|AM181028.1 21 1 15 6 Bos_taurus_isolate|HQ184041.1 21 1 14 7 Lama_glama_mitochondrial|AP003426.1 15 1 13 2 Martes_pennanti_haplotype|GU121229.1 13 1 7 6 Phascogale_tapoatafa_complete|AJ639869.1 23 2 16 7 Caperea_marginata_complete|AJ554052.1 239 49 152 87 Homo_sapiens_mitochondrion,|J01415.2 237 48 152 85 Homo_sapiens_mitochondrial|X93334.1 228 44 150 78 Homo_sapiens_neanderthalensis|AM948965.1 208 25 152 56 Pan_troglodytes_vellerosus|GU112742.1 203 25 150 53 Pan_troglodytes_ellioti|HM068585.1 194 22 146 48 Pan_troglodytes_schweinfurthii|GU112740.1 244 26 173 71 Pan_paniscus_mitochondrial|D38116.1 110 9 74 36 Gorilla_gorilla_gorilla|X93347.1 107 9 73 34 Gorilla_gorilla_mitochondrial|D38114.1 65 8 41 24 Pongo_abelii_mitochondrial|X97707.1 57 6 36 21 Symphalangus_syndactylus_mitochondrial|AB504750.1 54 3 36 18 Nomascus_siki_mitochondrial|AB504751.1 59 5 39 20 Hylobates_pileatus_mitochondrial|AB504749.1 58 5 39 19 Pongo_pygmaeus_mitochondrial|D38115.1 57 5 36 21 Hylobates_lar_complete|X99256.1 51 4 32 19 Nomascus_gabriellae_isolate|HQ622806.1 19 2 16 3 Nasalis_larvatus_mitochondrion,|DQ355298.1 21 2 14 7 Macaca_mulatta_mitochondrion,|AY612638.1 19 2 14 5 Saimiri_sciureus_mitochondrial|AB371091.1 30 2 22 8 Papio_hamadryas_mitochondrial|Y18001.1 31 2 23 8 Procolobus_badius_mitochondrion,|DQ355301.1 25 2 16 9 Rhinoceros_unicornis_complete|X97336.1 27 2 19 8 Macaca_thibetana_mitochondrion,|EU294187.1 25 2 18 7 Macaca_sylvanus_mitochondrial|AJ309865.1 48 3 31 17 Hylobates_agilis_mitochondrial|AB504748.1 198 14 124 74 Tripsacum_dactyloides_cultivar|DQ984517.1 58 2 46 12 Physcomitrella_patens_mitochondrial|AB251495.1 48 3 34 14 Malawimonas_jakobiformis_mitochondrial|AF295546.1 88 3 53 35 Guillardia_theta_nucleomorph|AF165818.4 88 3 53 35 Guillardia_theta_nucleomorph|AF083031.2 90 3 53 37 Guillardia_theta_DNA|AJ010592.2 20 1 16 4 Chlorocebus_pygerythrus_mitochondrion,|EF597500.1 18 1 11 7 Macaca_fascicularis_mitochondrion,|FJ906803.1 22 1 19 3 Pygathrix_roxellana_mitochondrion,|DQ355300.1 20 1 11 9 Aotus_lemurinus_mitochondrion,|FJ785421.1 15 1 10 5 Equus_caballus_mitochondrial|X79547.1 16 1 12 4 Cercopithecus_aethiops_mitochondrion,|AY863426.1 20 1 12 8 Dicerorhinus_sumatrensis_mitochondrion,|FJ905816.1 15 1 10 5 Equus_asinus_complete|X97337.1 23 1 18 5 Trachypithecus_obscurus_mitochondrion,|AY863425.1 25 1 16 9 Coelodonta_antiquitatis_mitochondrion,|FJ905813.1 23 1 18 5 Callicebus_donacophilus_mitochondrion,|FJ785423.1 16 1 11 5 Varecia_variegata_variegata|AB371089.1 23 1 18 5 Cercopithecus_aethiops_sabaeus|DQ069713.1 24 1 15 9 Ateles_belzebuth_mitochondrion,|FJ785422.1 14 1 10 4 Rhinoceros_sondaicus_mitochondrion,|FJ905815.1 23 1 18 5 Chlorocebus_tantalus_mitochondrion,|EF597502.1 25 1 21 4 Presbytis_melalophos_mitochondrion,|DQ355299.1 19 1 10 9 Cebus_albifrons_mitochondrial|AJ309866.1 29 2 21 8 Semnopithecus_entellus_mitochondrion,|DQ355297.1 30 2 20 10 Pygathrix_nemaeus_mitochondrion,|DQ355302.1 25 2 17 8 Theropithecus_gelada_mitochondrion,|FJ785426.1 127 7 107 20 Mus_musculus_domesticus|AB042432.1 127 7 107 20 Mus_musculus_strain|AY172335.1 90 5 74 16 Mus_musculus_castaneus|EF108342.1 89 3 76 13 Mus_musculus_musculus|DQ874614.2 91 3 77 14 Mus_musculus_molossinus|AY675564.1