Total Overlap F3 F5 Target 82 1 67 15 Marchantia_polymorpha_mitochondrion,|M68929.1 104 1 89 15 Sorghum_bicolor_mitochondrion,|DQ984518.1 139 1 110 29 Zea_luxurians_mitochondrion,|DQ645537.1 97 1 87 10 Cycas_taitungensis_mitochondrial|AP009381.1 108 1 91 17 Zea_mays_subsp.|DQ645536.1 110 1 91 19 Zea_mays_subsp.|DQ645539.1 102 1 87 15 Oryza_rufipogon_mitochondrial|AP011076.1 101 1 86 15 Triticum_aestivum_mitochondrial|AP008982.1 102 1 87 15 Oryza_sativa_Japonica|BA000029.3 102 1 87 15 Oryza_sativa_Japonica|DQ167400.1 102 1 87 15 Oryza_sativa_Indica|DQ167399.1 116 3 97 19 Physcomitrella_patens_mitochondrial|AB251495.1 114 5 86 28 Phaeoceros_laevis_mitochondrion,|GQ376531.1 163 2 122 41 Tripsacum_dactyloides_cultivar|DQ984517.1 103 3 77 26 Chlorokybus_atmophyticus_strain|EF463011.1 91 2 73 18 Pleurozia_purpurea_mitochondrion,|FJ999996.2 47 2 36 11 Chattonella_marina_mitochondrial|AB546636.1 37 2 28 9 Pygathrix_nemaeus_mitochondrion,|DQ355302.1 111 2 83 28 Aureoumbra_lagunensis_strain|GQ231542.1 118 2 90 28 Heterosigma_akashiwo_strain|EU168190.1 118 2 90 28 Heterosigma_akashiwo_strain|EU168191.1 138 3 106 32 Paulinella_chromatophora_chromatophore,|CP000815.1 80 2 55 25 Euglena_gracilis_chloroplast|X70810.2 94 1 84 10 Brassica_napus_mitochondrial|AP006444.1 84 1 68 16 Erodium_texanum_plastid,|HM125536.1 80 1 66 14 Erodium_carvifolium_chloroplast,|HQ713469.1 100 1 77 23 Huperzia_lucidula_chloroplast,|AY660566.1 113 1 88 25 Angiopteris_evecta_chloroplast,|DQ821119.1 116 1 91 25 Pteridium_aquilinum_subsp.|HM535629.1 108 1 84 24 Adiantum_capillus-veneris_chloroplast,|AY178864.1 106 1 81 25 Anthoceros_formosae_chloroplast|AB086179.1 101 1 79 22 Selaginella_uncinata_chloroplast|AB197035.2 112 1 85 27 Isoetes_flaccida_chloroplast,|GU191333.1 108 1 79 29 Selaginella_moellendorffii_plastid,|FJ755183.1 113 1 88 25 Cheilanthes_lindheimeri_chloroplast,|HM778032.1 115 1 90 25 Alsophila_spinulosa_chloroplast,|FJ556581.1 114 1 88 26 Physcomitrella_patens_subsp.|AP005672.1 118 1 91 27 Syntrichia_ruralis_chloroplast,|FJ546412.1 109 1 84 25 Marchantia_polymorpha_chloroplast|X04465.1 83 1 68 15 Geranium_palmatum_plastid,|HM125537.1 128 2 99 29 Nephroselmis_olivacea_chloroplast|AF137379.1 130 2 97 33 Parachlorella_kessleri_culture-collection|FJ968741.1 119 2 90 29 Aneura_mirabilis_chloroplast,|EU043314.1 126 2 97 29 Pyramimonas_parkeae_chloroplast,|FJ493499.1 115 2 88 27 Chaetosphaeridium_globosum_chloroplast,|AF494278.1 122 2 95 27 Pedinomonas_minor_culture-collection|FJ968740.1 116 2 91 25 Staurastrum_punctulatum_chloroplast,|AY958085.1 79 2 63 16 Monsonia_speciosa_plastid,|HM125538.1 104 1 80 24 Cryptomonas_paramecium_strain|GQ358203.1 112 1 85 27 Cyanidium_caldarium_strain|AF022186.2 120 1 91 29 Cyanidioschyzon_merolae_DBV201|AY286123.1 72 1 56 16 Bryopsis_hypnoides_chloroplast,|GQ892829.1 113 1 84 29 Trifolium_subterraneum_chloroplast,|EU849487.1 112 1 85 27 Aureococcus_anophagefferens_strain|GQ231541.1 109 1 81 28 Medicago_truncatula_chloroplast,|AC093544.8 114 1 89 25 Pycnococcus_provasolii_chloroplast,|FJ493498.1 109 1 82 27 Pisum_sativum_cultivar|HM029370.1 119 1 90 29 Cyanidioschyzon_merolae_chloroplast|AB002583.1 120 1 89 31 Chlorella_vulgaris_C-27|AB001684.1 90 1 75 15 Chara_vulgaris_mitochondrion,|AY267353.1 121 1 92 29 Gracilaria_tenuistipitata_var.|AY673996.1 98 1 72 26 Lathyrus_sativus_cultivar|HM029371.1 112 1 87 25 Durinskia_baltica_strain|GU591327.1 108 1 83 25 Guillardia_theta_complete|AF041468.1 121 1 92 29 Porphyra_yezoensis_chloroplast|AP006715.1 110 1 84 26 Thalassiosira_pseudonana_chloroplast,|EF067921.1 109 1 85 24 Rhodomonas_salina_strain|EF508371.1 112 1 86 26 Kryptoperidinium_foliaceum_strain|GU591328.1 108 1 82 26 Phaeodactylum_tricornutum_chloroplast,|EF067920.1 122 1 92 30 Chlorokybus_atmophyticus_chloroplast,|DQ422812.2 104 1 83 21 Fucus_vesiculosus_complete|FM957154.1 69 1 54 15 Bigelowiella_natans_plastid,|DQ851108.1 98 1 76 22 Alveolata_sp._CCMP3155|HM222968.1 112 1 87 25 Thalassiosira_oceanica_CCMP1005|GU323224.1 125 1 96 29 Porphyra_purpurea_chloroplast,|U38804.1 98 1 79 19 Cyanophora_paradoxa_cyanelle,|U30821.1 124 1 92 32 Mesostigma_viride_chloroplast|AF166114.1 105 1 76 29 Trachelium_caeruleum_chloroplast,|EU090187.1 106 1 85 21 Ectocarpus_siliculosus_chloroplast,|FP102296.1 107 1 82 25 Odontella_sinensis_complete|Z67753.1 118 1 91 27 Vaucheria_litorea_chloroplast,|EU912438.1 120 1 91 29 Chara_vulgaris_chloroplast,|DQ229107.1 28 1 24 4 Bison_bison_isolate|GU946997.1 26 1 22 4 Bison_bison_mitochondrion,|EU177871.1 27 1 21 6 Eubalaena_australis_mitochondrial|AP006473.1 22 1 18 4 Orcaella_heinsohni_isolate|JF339977.1 27 1 21 6 Balaena_mysticetus_complete|AJ554051.1 28 1 24 4 Bison_bison_isolate|GU947002.1 28 1 24 4 Bison_bison_isolate|GU947004.1 20 1 16 4 Rupicapra_rupicapra_mitochondrion,|FJ207539.1 28 1 24 4 Bison_bison_isolate|GU946994.1 28 1 24 4 Bison_bison_isolate|GU947000.1 22 1 19 3 Capra_sibirica_mitochondrion,|FJ207529.1 28 1 24 4 Bison_bison_isolate|GU946998.1 19 1 15 4 Pseudorca_crassidens_mitochondrion,|HM060332.1 26 1 21 5 Martes_pennanti_haplotype|GU121230.1 28 1 24 4 Bison_bison_isolate|GU946986.1 28 1 24 4 Bison_bison_isolate|GU946990.1 28 1 24 4 Bison_bison_isolate|GU946976.1 28 1 24 4 Bison_bison_isolate|GU946992.1 28 1 24 4 Bison_bison_isolate|GU946996.1 28 1 24 4 Bison_bison_isolate|GU946982.1 23 1 21 2 Martes_pennanti_haplotype|GU121228.1 18 1 14 4 Monodon_monoceros_complete|AJ554062.1 28 1 21 7 Saimiri_sciureus_mitochondrial|AB371091.1 27 1 23 4 Bison_bison_isolate|GU946978.1 28 1 24 4 Bison_bison_isolate|GU946988.1 28 1 24 4 Bison_bison_isolate|GU947006.1 29 1 23 6 Eubalaena_japonica_mitochondrial|AP006474.1 23 1 21 2 Martes_pennanti_haplotype|GU121232.1 28 1 24 4 Bison_bison_isolate|GU946984.1 23 1 21 2 Martes_pennanti_haplotype|GU121236.1 28 1 24 4 Bison_bison_isolate|GU946980.1 23 1 21 2 Martes_pennanti_haplotype|GU121234.1 24 1 22 2 Pontoporia_blainvillei_complete|AJ554060.1 22 1 19 3 Capra_falconeri_mitochondrion,|FJ207525.1 22 1 19 3 Capra_nubiana_mitochondrion,|FJ207527.1 30 1 26 4 Bison_bonasus_mitochondrion,|HM045017.1 28 1 24 4 Bison_bison_isolate|GU947001.1 16 1 13 3 Capra_pyrenaica_mitochondrion,|FJ207528.1 28 1 24 4 Bison_bison_isolate|GU946995.1 28 1 24 4 Bison_bison_isolate|GU946983.1 29 1 24 5 Balaenoptera_acutorostrata_complete|AJ554054.1 28 1 24 4 Bison_bison_isolate|GU947003.1 28 1 24 4 Bison_bison_isolate|GU946989.1 19 1 15 4 Orcinus_orca_isolate|HQ405752.1 28 1 24 4 Bison_bison_isolate|GU946987.1 28 1 24 4 Bison_bison_isolate|GU947005.1 28 1 24 4 Bison_bison_isolate|GU946985.1 28 1 24 4 Bison_bison_isolate|GU946981.1 28 1 24 4 Bison_bison_isolate|GU946999.1 28 1 24 4 Bison_bison_isolate|GU946991.1 26 1 22 4 Bison_bison_isolate|GU946977.1 28 1 24 4 Bison_bison_isolate|GU946993.1 29 1 25 4 Bos_grunniens_isolate|EF494179.1 28 1 23 5 Balaenoptera_bonaerensis_mitochondrial|AP006466.1 23 1 21 2 Martes_pennanti_haplotype|GU121235.1 28 1 24 4 Bison_bison_isolate|GU946979.1 31 1 26 5 Pygathrix_roxellana_mitochondrion,|DQ355300.1 26 1 20 6 Physeter_macrocephalus_mitochondrial|AJ277029.2 23 1 21 2 Martes_pennanti_haplotype|GU121231.1 23 1 21 2 Martes_pennanti_haplotype|GU121237.1 23 1 21 2 Martes_pennanti_haplotype|GU121233.1 23 1 21 2 Martes_pennanti_haplotype|GU121229.1 49 6 14 35 Geochelone_pardalis_voucher|DQ080041.1 29 1 24 5 Monomastix_sp._OKE-1|FJ493497.1 53 2 40 13 Cafeteria_roenbergensis_mitochondrial|AF193903.1 91 1 75 16 Reclinomonas_americana_mitochondrion,|AF007261.1 44 1 35 9 Chrysodidymus_synuroideus_mitochondrion,|AF222718.1 64 1 50 14 Micromonas_sp._RCC299|FJ858267.1 53 1 42 11 Heterosigma_akashiwo_isolate|GQ222227.1 308 71 196 112 Homo_sapiens_mitochondrial|X93334.1 305 71 194 111 Homo_sapiens_mitochondrion,|J01415.2 297 68 192 105 Homo_sapiens_neanderthalensis|AM948965.1 211 14 152 59 Guillardia_theta_nucleomorph|AF165818.4 213 14 152 61 Guillardia_theta_DNA|AJ010592.2 211 14 152 59 Guillardia_theta_nucleomorph|AF083031.2 89 14 26 63 Leishmania_braziliensis_MHOM/BR/75/M2904|FR798995.1 265 51 182 83 Homo_sp._Altai|FN673705.1 265 51 182 83 Homo_sp._Altai|FR695060.1 205 28 155 50 Pan_troglodytes_verus|GU112739.1 206 28 154 52 Pan_troglodytes_troglodytes|GU112738.1 203 26 155 48 Pan_troglodytes_mitochondrial|D38113.1 143 18 108 35 Gorilla_gorilla_mitochondrial|D38114.1 145 17 111 34 Gorilla_gorilla_gorilla|X93347.1 207 26 156 51 Pan_troglodytes_vellerosus|GU112742.1 205 25 155 50 Pan_troglodytes_ellioti|HM068585.1 204 26 153 51 Pan_troglodytes_schweinfurthii|GU112740.1 206 23 152 54 Pan_paniscus_mitochondrial|D38116.1 18 2 14 4 Rhyncholestes_raphanurus_complete|AJ508399.1 24 1 16 8 Otolemur_crassicaudatus_mitochondrial|AB371093.1 14 1 12 2 Galago_senegalensis_mitochondrial|AB371092.1 16 1 13 3 Nycticebus_coucang_mitochondrial|AJ309867.1 15 1 8 7 Chalinolobus_tuberculatus_mitochondrial|AF321051.1 26 1 21 5 Hemitragus_jemlahicus_mitochondrion,|FJ207531.1 22 1 17 5 Dugong_dugon_complete|AJ421723.1 10 1 9 1 Pseudomys_chapmani_mitochondrion,|EU305669.1 18 1 14 4 Manis_tetradactyla_complete|AJ421454.1 18 1 13 5 Loris_tardigradus_mitochondrial|AB371094.1 26 1 21 5 Cervus_elaphus_xanthopygus|GU457434.1 26 1 20 6 Cervus_nippon_yesoensis|AB210267.2 16 1 12 4 Rattus_lutreolus_isolate|GU570661.1 22 1 18 4 Cervus_nippon_centralis|AB211429.1 26 1 21 5 Odocoileus_virginianus_mitochondrion,|HQ332445.1 12 1 9 3 Choloepus_didactylus_mitochondrion,|AY960980.1 25 1 21 4 Giraffa_camelopardalis_mitochondrial|AP003424.1 26 1 21 5 Cervus_nippon_yakushimae|AB218689.1 20 1 16 4 Rupicapra_pyrenaica_mitochondrion,|FJ207538.1 16 1 12 4 Rattus_exulans_isolate|EU273709.1 15 1 9 6 Pipistrellus_abramus_mitochondrial|AB061528.1 20 1 16 4 Erinaceus_europaeus_complete|X88898.2 24 2 19 5 Hemitragus_jayakari_mitochondrion,|FJ207523.1 27 2 23 4 Pantholops_hodgsonii_mitochondrion,|DQ191826.1 27 2 22 5 Pseudois_nayaur_mitochondrion,|FJ207537.1 12 2 10 2 Takifugu_pardalis_mitochondrial|AP009528.1 24 2 19 5 Vicugna_vicugna_isolate|FJ456892.1 12 2 10 2 Takifugu_ocellatus_mitochondrial|AP009536.1 12 2 10 2 Takifugu_chrysops_mitochondrial|AP009525.1 25 2 20 5 Lama_pacos_complete|Y19184.1 22 2 18 4 Oryctolagus_cuniculus_complete|AJ001588.1 26 2 21 5 Odobenus_rosmarus_rosmarus|AJ428576.2 12 2 10 2 Takifugu_poecilonotus_mitochondrial|AP009539.1 31 2 23 8 Lepus_europaeus_complete|AJ421471.1 28 2 22 6 Hippopotamus_amphibius_complete|AJ010957.1 12 2 10 2 Takifugu_xanthopterus_mitochondrial|AP009533.1 12 2 10 2 Takifugu_exascurus_mitochondrial|AP009540.1 26 2 21 5 Damaliscus_pygargus_mitochondrion,|FJ207530.1 24 2 19 5 Trichechus_manatus_complete|AM904728.1 14 2 11 3 Takifugu_stictonotus_mitochondrial|AP009530.1 21 2 18 3 Chrysochloris_asiatica_mitochondrial|AB096866.1 12 2 10 2 Takifugu_vermicularis_mitochondrial|AP009532.1 26 2 21 5 Lama_guanicoe_mitochondrion,|EU681954.1 14 2 12 2 Miichthys_miiuy_mitochondrion,|HM447240.1 12 2 10 2 Takifugu_snyderi_mitochondrial|AP009531.1 23 2 18 5 Lama_glama_mitochondrial|AP003426.1 85 9 62 23 Hylobates_lar_complete|X99256.1 90 9 65 25 Hylobates_pileatus_mitochondrial|AB504749.1 30 5 20 10 Elephantulus_sp._VB001|AB096867.1 30 5 22 8 Castor_canadensis_complete|FR691684.1 93 8 67 26 Symphalangus_syndactylus_mitochondrial|AB504750.1 83 7 61 22 Nomascus_siki_mitochondrial|AB504751.1 80 7 58 22 Nomascus_gabriellae_isolate|HQ622806.1 78 7 65 13 Pongo_pygmaeus_mitochondrial|D38115.1 23 3 17 6 Thryonomys_swinderianus_complete|AJ301644.1 23 3 16 7 Microtus_kikuchii_mitochondrion,|AF348082.1 28 3 20 8 Castor_fiber_complete|FR691688.1 28 3 20 8 Castor_fiber_complete|FR691687.1 24 3 17 7 Cricetulus_griseus_mitochondrion,|DQ390542.2 28 3 20 8 Castor_fiber_complete|FR691689.1 28 3 20 8 Castor_fiber_complete|FR691685.1 28 3 20 8 Castor_fiber_complete|FR691686.1 24 2 17 7 Sorex_unguiculatus_mitochondrial|AB061527.1 68 9 31 37 Martes_zibellina_mitochondrion,|FJ429093.1 27 3 20 7 Muntiacus_reevesi_mitochondrion,|AF527537.1 20 3 13 7 Tupaia_belangeri_mitochondrion,|AF217811.1 34 3 23 11 Herpestes_javanicus_mitochondrion,|AY873843.1 29 3 22 7 Cervus_nippon_hortulorum|GU457433.1 17 3 12 5 Bradypus_tridactylus_mitochondrion,|AY960979.1 29 3 23 6 Antilope_cervicapra_mitochondrial|AP003422.1 30 4 24 6 Ovis_vignei_isolate|HM236186.1 31 4 24 7 Cervus_elaphus_yarkandensis|GU457435.1 30 4 23 7 Naemorhedus_caudatus_mitochondrion,|FJ469673.1 27 4 22 5 Naemorhedus_swinhoei_mitochondrion,|EF558665.1 29 4 23 6 Ovibos_moschatus_mitochondrion,|FJ207536.1 26 4 20 6 Capricornis_crispus_mitochondrial|AP003429.1 25 4 20 5 Capricornis_sumatraensis_mitochondrion,|FJ207534.1 32 4 24 8 Cervus_eldi_mitochondrion,|HM138200.1 32 4 25 7 Cervus_nippon_taiouanus|DQ985076.1 25 4 20 5 Budorcas_taxicolor_mitochondrion,|FJ006534.1 31 4 24 7 Cervus_elaphus_mitochondrial|AB245427.2 25 4 19 6 Oreamnos_americanus_mitochondrion,|FJ207535.1 32 4 25 7 Muntiacus_reevesi_micrurus|EF035447.1 32 4 25 7 Rangifer_tarandus_mitochondrial|AB245426.1 24 4 15 9 Rhinoceros_unicornis_complete|X97336.1 29 4 21 8 Elaphodus_cephalophus_mitochondrion,|DQ873526.1 28 4 22 6 Naemorhedus_griseus_mitochondrion,|FJ207532.1 29 4 23 6 Ovis_ammon_isolate|HM236188.1 30 4 24 6 Ovis_aries_complete|AF010406.1 29 4 23 6 Procapra_przewalskii_mitochondrion,|GU386355.1 29 4 23 6 Cervus_unicolor_swinhoei|DQ989636.3 32 4 24 8 Panthera_tigris_amoyensis|HM589214.1 31 4 23 8 Panthera_tigris_mitochondrion,|EF551003.1 31 4 23 8 Panthera_tigris_amoyensis|HM589215.1 26 4 19 7 Soriculus_fumidus_mitochondrion,|AF348081.1 26 5 15 11 Ceratotherium_simum_complete|Y07726.1 35 5 27 8 Panthera_pardus_mitochondrion,|EF551002.1 34 5 26 8 Uncia_uncia_mitochondrion,|EF551004.1 34 5 26 8 Felis_catus_mitochondrion,|U20753.1 32 3 27 5 Rousettus_aegyptiacus_mitochondrial|AB205183.1 32 3 26 6 Pteropus_scapulatus_mitochondrial|AF321050.1 31 3 25 6 Pteropus_dasymallus_mitochondrial|AB042770.1 28 3 21 7 Galemys_pyrenaicus_mitochondrion,|AY833419.1 15 2 9 6 Eothenomys_chinensis_mitochondrion,|FJ483847.1 15 2 11 4 Rattus_tunneyi_isolate|GU570662.1 16 2 10 6 Leggadina_lakedownensis_mitochondrion,|EU305668.1 25 2 20 5 Neofelis_nebulosa_mitochondrion,|DQ257669.1 15 2 9 6 Microtus_rossiaemeridionalis_mitochondrion,|DQ015676.1 20 2 13 7 Mesocricetus_auratus_mitochondrion,|EU660218.1 16 2 12 4 Proedromys_liangshanensis_mitochondrion,|FJ463038.1 25 2 19 6 Orycteropus_afer_complete|Y18475.1 34 3 28 6 Lynx_rufus_mitochondrion,|GQ979707.3 34 3 28 6 Acinonyx_jubatus_mitochondrion,|AF344830.1 124 3 99 25 Coccomyxa_sp._C-169|HQ693844.1 115 2 87 28 Emiliania_huxleyi_strain|AY741371.1 45 2 30 15 Ostreococcus_tauri_mitochondrion,|CR954200.2 148 4 123 25 Zea_mays_strain|AY506529.1 179 4 137 42 Zea_perennis_mitochondrion,|DQ645538.1 51 1 42 9 Oltmannsiellopsis_viridis_chloroplast,|DQ291132.1 21 1 18 3 Ailuropoda_melanoleuca_mitochondrion,|EF212882.1 22 1 18 4 Tremarctos_ornatus_mitochondrion,|EF196665.1 22 1 16 6 Eremitalpa_granti_complete|AM904729.1 21 1 16 5 Dendrohyrax_dorsalis_complete|AM904727.1 23 1 18 5 Camelus_bactrianus_isolate|EF212037.2 21 1 13 8 Jaculus_jaculus_complete|AJ416890.1 20 1 16 4 Sus_scrofa_complete|AJ002189.1 17 1 13 4 Sus_scrofa_domestica|AP003428.1 23 1 18 5 Camelus_bactrianus_ferus|EF212038.2 13 1 12 1 Takifugu_oblongus_mitochondrial|AP009535.1 12 1 11 1 Takifugu_rubripes_complete|AJ421455.1 20 1 12 8 Phacochoerus_africanus_mitochondrion,|DQ409327.1 20 1 17 3 Dasypus_novemcinctus_complete|Y11832.1 13 1 12 1 Torquigener_brevipennis_mitochondrial|AP009537.1 18 1 14 4 Sus_scrofa_taiwanensis|GU147934.1 13 1 12 1 Takifugu_porphyreus_mitochondrial|AP009529.1 15 1 11 4 Ilisha_africana_mitochondrial|AP009140.1 12 1 11 1 Takifugu_chinensis_mitochondrial|AP009534.1 13 1 12 1 Takifugu_fasciatus_mitochondrion,|GQ409967.1 25 1 21 4 Arctodus_simus_complete|FM177762.1 17 1 14 3 Procavia_capensis_mitochondrial|AB096865.1 11 1 9 2 Takifugu_niphobles_mitochondrial|AP009526.1 23 1 20 3 Spilogale_putorius_complete|AM711898.1 11 1 9 2 Ilisha_elongata_mitochondrial|AP009141.1 18 1 15 3 Macroscelides_proboscideus_complete|AJ421452.1 14 1 10 4 Leiocephalus_personatus_mitochondrial|AB266739.1 13 1 12 1 Takifugu_obscurus_mitochondrial|AP009527.1 74 7 54 20 Hylobates_agilis_mitochondrial|AB504748.1 29 3 18 11 Ochotona_collaris_mitochondrion,|AF348080.1 27 3 16 11 Ochotona_princeps_complete|AJ537415.1 32 3 23 9 Hyperoodon_ampullatus_complete|AJ554056.1 25 3 20 5 Camelus_dromedarius_mitochondrion,|EU159113.1 32 3 24 8 Pecari_tajacu_mitochondrial|AP003427.1 87 6 71 16 Pongo_abelii_mitochondrial|X97707.1 25 2 20 5 Hydropotes_inermis_mitochondrion,|EU315254.1 29 3 23 6 Meles_meles_complete|AM711900.1 29 2 23 6 Callicebus_donacophilus_mitochondrion,|FJ785423.1 32 3 26 6 Ateles_belzebuth_mitochondrion,|FJ785422.1 54 1 48 6 Neolamprologus_brichardi_mitochondrial|AP006014.1 22 1 18 4 Balaenoptera_borealis_mitochondrial|AP006470.1 22 1 18 4 Megaptera_novaeangliae_mitochondrial|AP006467.1 21 1 17 4 Balaenoptera_edeni_mitochondrial|AB201258.1 30 1 26 4 Eschrichtius_robustus_complete|AJ554053.1 15 1 12 3 Propithecus_verreauxi_coquereli|AB286049.1 24 2 18 6 Phocoena_phocoena_complete|AJ554063.1 22 4 17 5 Enhydra_lutris_mitochondrial|AB291077.1 24 4 19 5 Lutra_lutra_mitochondrion,|FJ236015.1 22 2 18 4 Eulemur_fulvus_fulvus|AB371086.1 24 2 18 6 Eulemur_macaco_macaco|AB371088.1 25 2 20 5 Phoca_fasciata_complete|AM181029.1 23 2 18 5 Moschus_berezovskii_mitochondrion,|EU043465.1 22 2 13 9 Ochotona_curzoniae_mitochondrion,|EF535828.1 20 2 15 5 Phoca_caspica_complete|AM181033.1 19 2 14 5 Canis_lupus_familiaris|DQ480489.1 19 2 14 5 Canis_familiaris_mitochondrion,|U96639.2 35 2 25 10 Trachypithecus_obscurus_mitochondrion,|AY863425.1 23 2 19 4 Mirounga_leonina_complete|AM181023.1 19 2 12 7 Daubentonia_madagascariensis_complete|AM905039.1 19 2 14 5 Canis_lupus_lupus|AM711902.1 22 2 18 4 Eulemur_fulvus_mayottensis|AB371087.1 24 2 16 8 Berardius_bairdii_complete|AJ554057.1 22 2 18 4 Bubalus_bubalis_breed|AY702618.1 27 2 22 5 Procyon_lotor_mitochondrial|AB297804.1 19 2 14 5 Canis_lupus_isolate|DQ480505.1 23 2 19 4 Monachus_schauinslandi_complete|AM181022.1 20 2 15 5 Halichoerus_grypus_complete|X72004.1 32 3 27 5 Bos_taurus_isolate|HQ184045.1 31 3 26 5 Bos_taurus_isolate|GU947011.1 31 3 26 5 Bos_taurus_isolate|GU947013.1 21 3 15 6 Grampus_griseus_mitochondrion,|EU557095.1 31 3 26 5 Bos_javanicus_mitochondrion,|FJ997262.1 31 3 26 5 Bos_taurus_isolate|GU947015.1 46 3 20 26 Gulo_gulo_complete|AM711901.1 31 3 26 5 Bos_taurus_isolate|HQ184035.1 19 3 13 6 Sousa_chinensis_mitochondrion,|EU557091.1 31 3 26 5 Bos_taurus_isolate|HQ184031.1 31 3 26 5 Bos_taurus_isolate|HQ184037.1 31 3 26 5 Bos_taurus_isolate|HQ184033.1 27 3 19 8 Balaenoptera_brydei_mitochondrial|AB201259.1 21 3 15 6 Tursiops_truncatus_mitochondrion,|EU557093.1 20 3 15 5 Canis_lupus_chanco|EU442884.2 26 3 21 5 Capra_ibex_mitochondrion,|FJ207526.1 21 3 15 6 Globicephala_macrorhynchus_mitochondrion,|HM060333.1 27 3 20 7 Delphinus_capensis_mitochondrion,|EU557094.1 31 3 26 5 Bos_indicus_breed|AY126697.1 23 3 17 6 Lagenorhynchus_albirostris_complete|AJ554061.1 27 3 19 8 Balaenoptera_brydei_mitochondrial|AP006469.1 21 3 15 6 Stenella_coeruleoalba_mitochondrion,|EU557097.1 31 3 26 5 Bos_taurus_isolate|GU947014.1 31 3 26 5 Bos_taurus_isolate|GU947016.1 31 3 26 5 Bos_taurus_isolate|GU947018.1 31 3 26 5 Bos_taurus_isolate|HQ184038.1 33 3 25 8 Caperea_marginata_complete|AJ554052.1 21 3 15 6 Stenella_attenuata_mitochondrion,|EU557096.1 24 3 19 5 Muntiacus_muntjak_mitochondrion,|AY225986.1 31 3 26 5 Bos_taurus_isolate|GU947008.1 23 3 15 8 Balaenoptera_physalus_mitochondrial|X61145.1 31 3 26 5 Bos_taurus_isolate|GU947012.1 19 3 14 5 Canis_lupus_laniger|FJ032363.2 31 3 26 5 Bos_taurus_isolate|HQ184036.1 31 3 26 5 Bos_taurus_isolate|HQ184034.1 31 3 26 5 Bos_taurus_isolate|GU947020.1 31 3 26 5 Bos_taurus_isolate|HQ184030.1 32 3 27 5 Bos_taurus_isolate|HQ184040.1 31 3 22 9 Inia_geoffrensis_complete|AJ554059.1 31 3 26 5 Bos_taurus_isolate|HQ184032.1 32 3 27 5 Bos_taurus_isolate|HQ184044.1 32 3 27 5 Bos_taurus_isolate|HQ184042.1 31 3 26 5 Bos_taurus_isolate|GU947010.1 31 3 26 5 Bos_taurus_mitochondrion,|AY526085.1 21 3 15 6 Globicephala_melas_mitochondrion,|HM060334.1 31 3 23 8 Kogia_breviceps_complete|AJ554055.1 21 3 15 6 Tursiops_aduncus_mitochondrion,|EU557092.1 24 3 19 5 Muntiacus_crinifrons_mitochondrion,|AY239042.1 26 3 19 7 Balaenoptera_musculus_mitochondrial|X72204.1 21 3 15 6 Globicephala_melas_isolate|JF339972.1 31 3 26 5 Bos_taurus_isolate|GU947021.1 32 3 26 6 Bos_primigenius_isolate|GU985279.1 31 3 26 5 Bos_taurus_isolate|GU947017.1 31 3 26 5 Bos_taurus_isolate|GU947009.1 21 3 15 6 Globicephala_macrorhynchus_isolate|JF339976.1 31 3 26 5 Bos_taurus_isolate|GU947007.1 31 3 26 5 Bos_taurus_isolate|GU947019.1 31 3 26 5 Bos_taurus_isolate|HQ184039.1 32 3 27 5 Bos_taurus_isolate|HQ184043.1 32 3 27 5 Bos_taurus_isolate|HQ184041.1 25 4 15 10 Diceros_bicornis_mitochondrion,|FJ905814.1 29 4 19 10 Coelodonta_antiquitatis_mitochondrion,|FJ905813.1 44 4 34 10 Procolobus_badius_mitochondrion,|DQ355301.1 35 2 28 7 Nasalis_larvatus_mitochondrion,|DQ355298.1 45 3 33 12 Semnopithecus_entellus_mitochondrion,|DQ355297.1 45 1 36 9 Nephroselmis_olivacea_mitochondrion,|AF110138.1 114 6 90 24 Megaceros_aenigmaticus_mitochondrion,|EU660574.1 122 2 89 33 Zygnema_circumcarinatum_chloroplast,|AY958086.1 96 6 74 22 Malawimonas_jakobiformis_mitochondrial|AF295546.1 120 4 94 26 Chaetosphaeridium_globosum_mitochondrial|AF494279.1 21 1 16 5 Phoca_hispida_complete|AM181036.1 22 1 17 5 Phoca_vitulina_mitochondrial|X63726.1 22 1 16 6 Phoca_sibirica_complete|AM181034.1 19 1 15 4 Lobodon_carcinophaga_complete|AM181024.1 9 1 7 2 Menura_novaehollandiae_mitochondrion,|AY542313.1 20 1 16 4 Nyctereutes_procyonoides_mitochondrion,|GU256221.1 7 1 5 2 Acrocephalus_scirpaceus_mitochondrial|AM889139.1 16 1 11 5 Vulpes_vulpes_complete|AM181037.1 43 1 16 27 Leptonychotes_weddellii_complete|AM181025.1 25 1 20 5 Moschus_moschiferus_mitochondrion,|FJ469675.1 21 1 16 5 Phoca_largha_complete|AM181031.1 26 2 20 6 Cystophora_cristata_complete|AM181028.1 27 1 21 6 Mogera_wogura_mitochondrial|AB099482.1 15 1 11 4 Rattus_sordidus_isolate|GU570665.1 11 1 7 4 Sciurus_vulgaris_complete|AJ238588.1 17 1 12 5 Equus_asinus_complete|X97337.1 18 1 13 5 Equus_caballus_mitochondrial|X79547.1 56 1 50 6 Mus_musculus_castaneus|EF108342.1 22 1 15 7 Microtus_fortis_calamorum|JF261175.1 11 1 7 4 Anomalurus_sp._GP-2005|AM159537.1 17 1 11 6 Rattus_norvegicus_mitochondrial|X14848.1 18 1 13 5 Mus_terricolor_mitochondrion,|EU352649.1 22 1 15 7 Microtus_fortis_fortis|JF261174.1 18 1 12 6 Rattus_rattus_isolate|EU273707.1 20 1 13 7 Rhinolophus_formosae_mitochondrion,|EU166918.1 21 1 14 7 Echinosorex_gymnura_mitochondrion,|AF348079.1 13 1 9 4 Rattus_praetor_isolate|EU273708.1 34 1 27 7 Colobus_guereza_mitochondrion,|AY863427.1 18 1 12 6 Talpa_europaea_complete|Y19192.1 13 1 9 4 Rattus_tanezumi_isolate|EU273712.1 29 1 23 6 Urotrichus_talpoides_mitochondrial|AB099483.1 12 1 8 4 Rattus_fuscipes_isolate|GU570664.1 16 1 10 6 Rattus_villosissimus_isolate|GU570663.1 35 1 30 5 Presbytis_melalophos_mitochondrion,|DQ355299.1 16 1 12 4 Mystacina_tuberculata_mitochondrion,|AY960981.1 18 1 13 5 Artibeus_jamaicensis_mitochondrial|AF061340.1 23 2 15 8 Dicerorhinus_sumatrensis_mitochondrion,|FJ905816.1 55 2 46 9 Mus_musculus_musculus|DQ874614.2 57 2 48 9 Mus_musculus_molossinus|AY675564.1 76 3 64 12 Mus_musculus_domesticus|AB042432.1 75 3 63 12 Mus_musculus_strain|AY172335.1