XENTR_CHORI-219_ID.2.fasta: 2 seqs, max len 333, avg len 333 Self: >XENTR_NM_001011405_2 gi|58332665|ref|NM_001011405| 177 + catgcattccag 188 |||| || ||| 213 + catggatctcag 224 Identities 9/12 (75.0%), gaps 0/12 (0.0%) 177-188, 213-224 ~~~~~~~~~~~~~~~~~11~22~~~~~~~~~~ 333 Self: >XENLA_CH219-206K7_2 177 + catgcattccag 188 |||| || ||| 213 + catggatctcag 224 Identities 9/12 (75.0%), gaps 0/12 (0.0%) 177-188, 213-224 ~~~~~~~~~~~~~~~~~11~22~~~~~~~~~~ 333 Self: >XENLA_CH219-206K7_2 151 + agcgagcaatacaggga 167 |||| ||| | | || 235 - agcgcccaacgctgaga 219 Identities 11/17 (64.7%), gaps 0/17 (0.0%) 151-167, 219-235 ~~~~~~~~~~~~~~>>>~~~~<<~~~~~~~~~ 333 Inversion: >XENTR_NM_001011405_2 gi|58332665|ref|NM_001011405| >XENLA_CH219-206K7_2 222 + cagcgttgggcg 233 | | ||| || 164 - ctgtattgctcg 153 Identities 7/12 (58.3%), gaps 0/12 (0.0%) 222 - 233 (12) ~~~~~~~~~~~~~~~~~~~~~>>~~~~~~~~~ 333 153 - 164 (12) ~~~~~~~~~~~~~~~<<~~~~~~~~~~~~~~~ 333 Inverted duplication: >XENLA_CH219-206K7_2 151 + agcgagcaatacaggga 167 |||| ||| | | || 235 - agcgcccaacgctgaga 219 Identities 11/17 (64.7%), gaps 0/17 (0.0%) 151-167, 219-235 ~~~~~~~~~~~~~~>>>~~~~<<~~~~~~~~~ 333 Duplications: Start1 End1 Start2 End2 Length1 Length2 PctId Label ------- ------- ------- ------- ------- ------- ------- ----- 177 188 213 224 12 12 75.0 XENTR_NM_001011405_2 gi|58332665|ref|NM_001011405| 177 188 213 224 12 12 75.0 XENLA_CH219-206K7_2 151 167 219 235 17 17 64.7 XENLA_CH219-206K7_2 No repeats found. Inversions: Seq1 Seq2 Label1 Label2 From1 To1 Length1 From2 To2 Length2 ----- ----- -------------------- -------------------- ----- ----- ------- ----- ----- ------- 1 2 XENTR_NM_001011405_2 XENLA_CH219-206K7_2 222 233 12 153 164 12 2 2 XENLA_CH219-206K7_2 XENLA_CH219-206K7_2 151 167 17 219 235 17 Average accuracies: Seq Accuracy Pct Id Label ----- -------- -------- ----- 1 99.7% 99.1% XENTR_NM_001011405_2 gi|58332665|ref|NM_001011405| 2 99.7% 99.1% XENLA_CH219-206K7_2 ----- -------- -------- 2 99.7% 99.1% Acc std dev=0.0%, outlier acc < 50.0% MSA cartoon, one symbol = 4.2 bases XENLA_CH219-206K xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx>>>>>x1111xxxxx2<<<<>>>xxxxxxxxxxxxxxxxxxxxxxx 0.0 M Cells 1.0 Avg cells per row 1 Max per row 0.0 Mb Fract values 0.0 Mb Start pos 0.0 Mb Col indexes 0.0 Mb Total All sequences, unmasked 2 seqs, 333 cols XENLA_CH219-206K 1 + gtgctatagacgcgcaaaacgaccaagagccacaaatcaagcacacatatcaaaaaacaaatga 64 XENTR_NM_0010114 1 + gtgctatagacgcgcaaaacgaccaagagccacaaatcaagcacacatatcaaaaaacaaatga 64 **************************************************************** XENLA_CH219-206K 65 + gctcttattttgtaaactcattttgcggtcgctatccaaatggcccggactaccagttacataa 128 XENTR_NM_0010114 65 + gctcttattttgtaaactcattttgcggtcgctatccaaatggcccggactaccagttacataa 128 **************************************************************** XENLA_CH219-206K 129 + ttatggagatcagagctcggtgagcgagcaatacagggatacaacgagcatgcattccagcagg 192 XENTR_NM_0010114 129 + ttatggagatcacagctcggtgaacgagcaatacagggatacaacgagcatgcattccagcagg 192 ************ ********** **************************************** XENLA_CH219-206K 193 + tacggatacggctacaatggcatggatctcagcgttgggcgctcagcttccaaccactttagtg 256 XENTR_NM_0010114 193 + tacggatacggctacaatggcatggatctcagcgttgggcgctcagcttccaaccactttagtg 256 **************************************************************** XENLA_CH219-206K 257 + ccaatgacagagcaaggaattatccatccaatccgagctcctctacagagccaaggtataacca 320 XENTR_NM_0010114 257 + ccaatgacagagcaaggaattatccatccaatccgagctcctctacagagccaaggtataacca 320 **************************************************************** XENLA_CH219-206K 321 + acctgcagcctct 333(1) XENTR_NM_0010114 321 + acctgcagcgtct 333(1) ********* *** Finished Wed Dec 9 11:25:28 2009 Elapsed time 00:00 Max memory 23Mb