XENTR_CHORI-219_ID.24.fasta: 2 seqs, max len 532, avg len 532 Self: >XENTR_NM_001127429_24 gi|188528950|ref|NM_001127429| 224 + cctcatctct 233 ||| || || 260 + cctgctccct 269 Identities 7/10 (70.0%), gaps 0/10 (0.0%) 224-233, 260-269 ~~~~~~~~~~~~~11~2~~~~~~~~~~~~~~~ 532 Self: >XENLA_CH219-206K7_24 226 + tcatctctg 234 | || ||| 262 + tgctccctg 270 Identities 6/9 (66.7%), gaps 0/9 (0.0%) 226-234, 262-270 ~~~~~~~~~~~~~~1~2~~~~~~~~~~~~~~~ 532 Self: >XENLA_CH219-206K7_24 327 + tatgagaag 335 ||| || || 336 + tatcagcag 344 Identities 7/9 (77.8%), gaps 0/9 (0.0%) 327-335, 336-344 ~~~~~~~~~~~~~~~~~~~~22~~~~~~~~~~ 532 Duplications: Start1 End1 Start2 End2 Length1 Length2 PctId Label ------- ------- ------- ------- ------- ------- ------- ----- 224 233 260 269 10 10 70.0 XENTR_NM_001127429_24 gi|188528950|ref|NM_001127429| 226 234 262 270 9 9 66.7 XENLA_CH219-206K7_24 327 335 336 344 9 9 77.8 XENLA_CH219-206K7_24 No repeats found. No inversions found. Average accuracies: Seq Accuracy Pct Id Label ----- -------- -------- ----- 1 99.7% 96.2% XENTR_NM_001127429_24 gi|188528950|ref|NM_001127429| 2 99.7% 96.2% XENLA_CH219-206K7_24 ----- -------- -------- 2 99.7% 96.2% Acc std dev=0.0%, outlier acc < 50.0% MSA cartoon, one symbol = 6.7 bases XENLA_CH219-206K xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx11xxx22xxxxxxxx1222xxxxxxxxxxxxxxxxxxxxxxxxxxx XENTR_NM_0011274 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx11xxx22xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 0.0 M Cells 1.0 Avg cells per row 1 Max per row 0.0 Mb Fract values 0.0 Mb Start pos 0.0 Mb Col indexes 0.0 Mb Total All sequences, unmasked 2 seqs, 532 cols XENLA_CH219-206K 1 + gtcggaccagggaggccattggaggaggaacgccacgtgacagaggggtgccaatgttattctt 64 XENTR_NM_0011274 1 + gtctgaccagcgaggccattggaggaggaacgccacgtgacagaggggtgccaatgttattctt 64 *** ****** ***************************************************** XENLA_CH219-206K 65 + tacgggtgtcaagaccctgtcagtttgtgaaataaatattgggaaacaacgaaatgcaaaaagc 128 XENTR_NM_0011274 65 + tacgggtgtcaagaccctgtcagtttgtgaaataaatattgggaaacaacgaaatgcaaaaagc 128 **************************************************************** XENLA_CH219-206K 129 + gacctactacgacagcgctgcgatctatggcggatatccctaccaaggagcaaatggtttcact 192 XENTR_NM_0011274 129 + gacctactacgacagctctgcgatctatggtggatatccctaccaaggagcaaatggtttcact 192 **************** ************* ********************************* XENLA_CH219-206K 193 + tataatgcaagtcagcagcaatatcctccttcctcatctctgctggaaagtgaatatcatcgac 256 XENTR_NM_0011274 193 + tataatgcaagtcagcagcaatatcctccttcctcatctctgctggaaactgaatatcatcgac 256 ************************************************* ************** XENLA_CH219-206K 257 + ctgcctgctccctgcagtcacctggcagcgctgtgccccatctcaaggccaatgacatcaatga 320 XENTR_NM_0011274 257 + ctgcctgctccctgcagtcacctggcagcgcagtgccccatcacaaggccaatgacatcaacga 320 ******************************* ********** ****************** ** XENLA_CH219-206K 321 + aagttgtatgagaagtatcagcagtcaatcaagtcaagccccggtcattcccgagcagcagccc 384 XENTR_NM_0011274 321 + aagttgtatgagaaccattaacagtcaatcaaaccaagccccggtcattcccgagcagcagccc 384 ************** ** * *********** ****************************** XENLA_CH219-206K 385 + acaccacaagggccgccaccctctgtgtccccaccacaaaccaccagcaatgcagccacagcct 448 XENTR_NM_0011274 385 + acaccgcaagggccgccaccctctgtgtccccaccacaaaccaccagcaatgcagccacagcct 448 ***** ********************************************************** XENLA_CH219-206K 449 + cctccaacaaggccacaggcatcaactcacctaccatgtcaaagcagattttcccttggatgaa 512 XENTR_NM_0011274 449 + cctccaacaaggccacaagcatcacctcacctaccatgtcaaagcagattttcccttggatgaa 512 ***************** ****** *************************************** XENLA_CH219-206K 513 + agagtcccggcagaacacaa 532(1) XENTR_NM_0011274 513 + agaatcccgacagaacacga 532(1) *** ***** ******** * Finished Wed Dec 9 11:25:26 2009 Elapsed time 00:01 Max memory 38Mb