XENTR_CHORI-219_ID.26.fasta: 2 seqs, max len 439, avg len 439 Self: >XENTR_NM_001127429_26 gi|188528950|ref|NM_001127429| 178 + gtttatgtagg 188 || |||||||| 341 - gtgtatgtagg 331 Identities 10/11 (90.9%), gaps 0/11 (0.0%) 178-188, 331-341 ~~~~~~~~~~~~~>>~~~~~~~~~<<~~~~~~ 439 Self: >XENLA_CH219-206K7_26 164 + tacagggaa 172 || ||||| 185 + tagggggaa 193 Identities 7/9 (77.8%), gaps 0/9 (0.0%) 164-172, 185-193 ~~~~~~~~~~~~122~~~~~~~~~~~~~~~~~ 439 Self: >XENLA_CH219-206K7_26 178 + gtttatgta 186 || |||||| 341 - gtgtatgta 333 Identities 8/9 (88.9%), gaps 0/9 (0.0%) 178-186, 333-341 ~~~~~~~~~~~~~>~~~~~~~~~~<<~~~~~~ 439 Inverted duplication: >XENTR_NM_001127429_26 gi|188528950|ref|NM_001127429| 178 + gtttatgtagg 188 || |||||||| 341 - gtgtatgtagg 331 Identities 10/11 (90.9%), gaps 0/11 (0.0%) 178-188, 331-341 ~~~~~~~~~~~~~>>~~~~~~~~~<<~~~~~~ 439 Inversion: >XENTR_NM_001127429_26 gi|188528950|ref|NM_001127429| >XENLA_CH219-206K7_26 328 + caccctacatacac 341 | ||||||||| || 191 - ccccctacataaac 178 Identities 12/14 (85.7%), gaps 0/14 (0.0%) 328 - 341 (14) ~~~~~~~~~~~~~~~~~~~~~~~~>>~~~~~~ 439 178 - 191 (14) ~~~~~~~~~~~~~<<~~~~~~~~~~~~~~~~~ 439 Inversion: >XENTR_NM_001127429_26 gi|188528950|ref|NM_001127429| >XENLA_CH219-206K7_26 178 + gtttatgta 186 || |||||| 341 - gtgtatgta 333 Identities 8/9 (88.9%), gaps 0/9 (0.0%) 178 - 186 (9) ~~~~~~~~~~~~~>~~~~~~~~~~~~~~~~~~ 439 333 - 341 (9) ~~~~~~~~~~~~~~~~~~~~~~~~<<~~~~~~ 439 Inverted duplication: >XENLA_CH219-206K7_26 178 + gtttatgta 186 || |||||| 341 - gtgtatgta 333 Identities 8/9 (88.9%), gaps 0/9 (0.0%) 178-186, 333-341 ~~~~~~~~~~~~~>~~~~~~~~~~<<~~~~~~ 439 Duplications: Start1 End1 Start2 End2 Length1 Length2 PctId Label ------- ------- ------- ------- ------- ------- ------- ----- 178 188 331 341 11 11 90.9 XENTR_NM_001127429_26 gi|188528950|ref|NM_001127429| 164 172 185 193 9 9 77.8 XENLA_CH219-206K7_26 178 186 333 341 9 9 88.9 XENLA_CH219-206K7_26 No repeats found. Inversions: Seq1 Seq2 Label1 Label2 From1 To1 Length1 From2 To2 Length2 ----- ----- -------------------- -------------------- ----- ----- ------- ----- ----- ------- 1 1 XENTR_NM_001127429_2 XENTR_NM_001127429_2 178 188 11 331 341 11 1 2 XENTR_NM_001127429_2 XENLA_CH219-206K7_26 328 341 14 178 191 14 1 2 XENTR_NM_001127429_2 XENLA_CH219-206K7_26 178 186 9 333 341 9 2 2 XENLA_CH219-206K7_26 XENLA_CH219-206K7_26 178 186 9 333 341 9 Average accuracies: Seq Accuracy Pct Id Label ----- -------- -------- ----- 1 99.7% 95.0% XENTR_NM_001127429_26 gi|188528950|ref|NM_001127429| 2 99.7% 95.0% XENLA_CH219-206K7_26 ----- -------- -------- 2 99.7% 95.0% Acc std dev=0.0%, outlier acc < 50.0% MSA cartoon, one symbol = 5.5 bases XENLA_CH219-206K xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx11>>>>>xxxxxxxxxxxxxxxxxxxxxxxxx>>>xxxxxxxxxxxxxxxxx 0.0 M Cells 1.0 Avg cells per row 1 Max per row 0.0 Mb Fract values 0.0 Mb Start pos 0.0 Mb Col indexes 0.0 Mb Total All sequences, unmasked 2 seqs, 439 cols XENLA_CH219-206K 1 + aacaaacaccaccctggcgcctatggtgtgcctgcaccctacccaagcccccacaacagctgtc 64 XENTR_NM_0011274 1 + aacaaacaccaccctagcgcgtatggcgtgcctgcaccctacccaagcccccacaacagctgcc 64 *************** **** ***** *********************************** * XENLA_CH219-206K 65 + ctccccaccaaaaaagatacagcggaactgctgcggtcaccccagaatatgagccccatcctct 128 XENTR_NM_0011274 65 + ctccccaccaaaagagatacagcgggactgctgcggtcacccctgaatatgagccacatcctct 128 ************* *********** ***************** *********** ******** XENLA_CH219-206K 129 + ccaacaaggcaacggagcttatgggaatcctcatgtacagggaagccccgtttatgtaggggga 192 XENTR_NM_0011274 129 + ccaacaaagcagcggagcttatgggaatccgcatgtacagggaagccccgtttatgtagggggg 192 ******* *** ****************** ******************************** XENLA_CH219-206K 193 + aactatgtggagaccatgactaattctggaccatccatgtttggtttgtctcatctctctcatt 256 XENTR_NM_0011274 193 + aactatgtggagaccatgactaattctggaccatccatgtttggtttgtctcatctctctcatt 256 **************************************************************** XENLA_CH219-206K 257 + cctcatcgaacatggactacagtggagccggacccatgaacagtggtcaccaccatggaccttg 320 XENTR_NM_0011274 257 + cctcatcgaacatggactacagtggagccggacccatgaacagtggtcaccaccatggaccctg 320 ************************************************************* ** XENLA_CH219-206K 321 + tgactcccacactacatacacagacttatctgctcaccacaatcctcagggaagaattcaggaa 384 XENTR_NM_0011274 321 + tgactctcaccctacatacacggacttatctgctcaccacaatcctcagggaagaattcaggaa 384 ****** *** ********** ****************************************** XENLA_CH219-206K 385 + gcccccaaattaacacatttgtaatggccatggagacaaataatcccctcttttc 439(1) XENTR_NM_0011274 385 + gcccccaaattaacacatttgtaatgatcgtggagacaaattttccccttttttc 439(1) ************************** * *********** ****** ***** Finished Wed Dec 9 11:25:27 2009 Elapsed time 00:01 Max memory 31Mb