XENTR_CHORI-219_ID.28.fasta: 2 seqs, max len 311, avg len 311 Self: >XENTR_NM_001007499_28 gi|55926079|ref|NM_001007499| 147 + caccaaaagcctca 160 |||||| ||| ||| 177 + caccaagagcttca 190 Identities 12/14 (85.7%), gaps 0/14 (0.0%) 147-160, 177-190 ~~~~~~~~~~~~~~~11~22~~~~~~~~~~~~ 311 Self: >XENLA_CH219-166K18_28 146 + ccacaaaaagcctca 160 |||| || ||| ||| 176 + ccaccaagagcttca 190 Identities 12/15 (80.0%), gaps 0/15 (0.0%) 146-160, 176-190 ~~~~~~~~~~~~~~~11~22~~~~~~~~~~~~ 311 Self: >XENLA_CH219-166K18_28 217 + tcttcccagtccatgttc 234 |||||| | |||| | 253 + tcttccatgagcatgccc 270 Identities 12/18 (66.7%), gaps 0/18 (0.0%) 217-234, 253-270 ~~~~~~~~~~~~~~~~~~~~~~111~222~~~ 311 Self: >XENLA_CH219-166K18_28 76 + gtgccccag 84 ||| ||||| 149 - gtggcccag 141 Identities 8/9 (88.9%), gaps 0/9 (0.0%) 76-84, 141-149 ~~~~~~~~>>~~~~<<~~~~~~~~~~~~~~~~ 311 Inversion: >XENTR_NM_001007499_28 gi|55926079|ref|NM_001007499| >XENLA_CH219-166K18_28 203 + ccatgagtccgct 215 |||||| ||||| 100 - gcatgagcccgct 88 Identities 11/13 (84.6%), gaps 0/13 (0.0%) 203 - 215 (13) ~~~~~~~~~~~~~~~~~~~~~>>~~~~~~~~~ 311 88 - 100 (13) ~~~~~~~~~<<~~~~~~~~~~~~~~~~~~~~~ 311 Inverted duplication: >XENLA_CH219-166K18_28 76 + gtgccccag 84 ||| ||||| 149 - gtggcccag 141 Identities 8/9 (88.9%), gaps 0/9 (0.0%) 76-84, 141-149 ~~~~~~~~>>~~~~<<~~~~~~~~~~~~~~~~ 311 Inverted duplication: >XENLA_CH219-166K18_28 93 + gctcatgcagc 103 |||||| || 210 - actcatggagt 200 Identities 8/11 (72.7%), gaps 0/11 (0.0%) 93-103, 200-210 ~~~~~~~~~>>~~~~~~~~~<<<~~~~~~~~~ 311 Duplications: Start1 End1 Start2 End2 Length1 Length2 PctId Label ------- ------- ------- ------- ------- ------- ------- ----- 147 160 177 190 14 14 85.7 XENTR_NM_001007499_28 gi|55926079|ref|NM_001007499| 146 160 176 190 15 15 80.0 XENLA_CH219-166K18_28 217 234 253 270 18 18 66.7 XENLA_CH219-166K18_28 76 84 141 149 9 9 88.9 XENLA_CH219-166K18_28 No repeats found. Inversions: Seq1 Seq2 Label1 Label2 From1 To1 Length1 From2 To2 Length2 ----- ----- -------------------- -------------------- ----- ----- ------- ----- ----- ------- 1 2 XENTR_NM_001007499_2 XENLA_CH219-166K18_2 203 215 13 88 100 13 2 2 XENLA_CH219-166K18_2 XENLA_CH219-166K18_2 76 84 9 141 149 9 2 2 XENLA_CH219-166K18_2 XENLA_CH219-166K18_2 93 103 11 200 210 11 Average accuracies: Seq Accuracy Pct Id Label ----- -------- -------- ----- 1 99.7% 93.9% XENTR_NM_001007499_28 gi|55926079|ref|NM_001007499| 2 99.7% 93.9% XENLA_CH219-166K18_28 ----- -------- -------- 2 99.7% 93.9% Acc std dev=0.0%, outlier acc < 50.0% MSA cartoon, one symbol = 3.9 bases XENLA_CH219-166K xxxxxxxxxxxxxxxxxxx>>><<>>>xxxxxxxxx<<<111xxx22222x<<<>>>xxxxxxxxxxxxxxxxxxxxxxxx 0.0 M Cells 1.0 Avg cells per row 1 Max per row 0.0 Mb Fract values 0.0 Mb Start pos 0.0 Mb Col indexes 0.0 Mb Total All sequences, unmasked 2 seqs, 311 cols XENLA_CH219-166K 1 + tggttcaagaaccgccgagccaagtggaggaagagggagcggaaccagcagatggacctgtgta 64 XENTR_NM_0010074 1 + tggttcaagaaccgcagagccaagtggaggaagagggagcggaaccagcagatggacctgtgca 64 *************** ********************************************** * XENLA_CH219-166K 65 + agaatggttacgtgccccagttcagcgggctcatgcagccgtacgacgagatgtacgcaggata 128 XENTR_NM_0010074 65 + agaatggctacgtgccccagttcagcggcctgatgcagccctacgatgagatgtacgctggcta 128 ******* ******************** ** ******** ***** *********** ** ** XENLA_CH219-166K 129 + cccctacaacaactgggccacaaaaagcctcacccctgcccccctgtccaccaagagcttcacc 192 XENTR_NM_0010074 129 + cccgtacaacaactgggccaccaaaagcctcacccctgcccccctgtccaccaagagcttcacc 192 *** ***************** ****************************************** XENLA_CH219-166K 193 + ttcttcaactccatgagtcccttgtcttcccagtccatgttctccggccccagctccatctctt 256 XENTR_NM_0010074 193 + ttcttcaactccatgagtccgctgtcctcccagtccatgttctctggccccagctccatctctt 256 ******************** **** ***************** ******************* XENLA_CH219-166K 257 + ccatgagcatgccctccagcatgggtcactctgcggtgccaggcatggccaactc 311(1) XENTR_NM_0010074 257 + ccatgagcatgccctccagcatgggccactcggcggtgcccggcatgcccaactc 311(1) ************************* ***** ******** ****** ******* Finished Wed Dec 9 11:25:27 2009 Elapsed time 00:00 Max memory 22Mb