XENTR_CHORI-219_ID.29.fasta: 2 seqs, max len 214, avg len 214 Self: >XENTR_NM_001007499_29 gi|55926079|ref|NM_001007499| 52 + ggcccccc 59 ||| |||| 61 + ggctcccc 68 Identities 7/8 (87.5%), gaps 0/8 (0.0%) 52-59, 61-68 ~~~~~~~~122~~~~~~~~~~~~~~~~~~~~~ 214 Self: >XENLA_CH219-166K18_29 105 + ggcaagcc-tgagactga 121 ||||||| |||| ||| 190 - ggcaagcattgaggctgg 173 Identities 14/17 (82.4%), gaps 1/18 (5.6%) 105-121, 173-190 ~~~~~~~~~~~~~~~~>>>~~~~~~~<<<~~~ 214 Self: >XENLA_CH219-166K18_29 172 + tccagcctcaatgcttgcc 190 | ||| |||| ||||||| 122 - ttcagtctca-ggcttgcc 105 Identities 15/18 (83.3%), gaps 1/19 (5.3%) 105-122, 172-190 ~~~~~~~~~~~~~~~~>>>~~~~~~~<<<~~~ 214 Duplications: Start1 End1 Start2 End2 Length1 Length2 PctId Label ------- ------- ------- ------- ------- ------- ------- ----- 52 59 61 68 8 8 87.5 XENTR_NM_001007499_29 gi|55926079|ref|NM_001007499| 105 121 173 190 17 18 82.4 XENLA_CH219-166K18_29 172 190 105 122 19 18 83.3 XENLA_CH219-166K18_29 No repeats found. No inversions found. Average accuracies: Seq Accuracy Pct Id Label ----- -------- -------- ----- 1 99.6% 92.1% XENTR_NM_001007499_29 gi|55926079|ref|NM_001007499| 2 99.6% 92.1% XENLA_CH219-166K18_29 ----- -------- -------- 2 99.6% 92.1% Acc std dev=0.0%, outlier acc < 50.0% MSA cartoon, one symbol = 2.7 bases XENLA_CH219-166K xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx2222222xxxxxxxxxxxxxxxxxx11111111xxxxxxxx XENTR_NM_0010074 xxxxxxxxxxxxxxxxxxx1112222xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 0.0 M Cells 1.0 Avg cells per row 1 Max per row 0.0 Mb Fract values 0.0 Mb Start pos 0.0 Mb Col indexes 0.0 Mb Total All sequences, unmasked 2 seqs, 214 cols XENLA_CH219-166K 1 + atcagcggctcctccctcaactcagccatgtcttctactggttgtccctatggaccccctggtt 64 XENTR_NM_0010074 1 + atcagcagctcctccctcaactccgccatgtcttctactgcttgtccctatggcccccccggct 64 ****** **************** **************** ************ ***** ** * XENLA_CH219-166K 65 + ccccctacacggtttaccgggacacttgtaactccagtctggcaagcctgagactgaaatccaa 128 XENTR_NM_0010074 65 + ccccatacacggtatacagggacacttgtaactcgagtttggccagcctgagactgaaatccaa 128 **** ******** *** **************** *** **** ******************** XENLA_CH219-166K 129 + gcagcactccaccttcggctacagcagcctccagagcccggcctccagcctcaatgcttgccaa 192 XENTR_NM_0010074 129 + gcagcactccacctttggctacagtagcctgcagagcccggcctccagcctcaatgcctgccag 192 *************** ******** ***** ************************** ***** XENLA_CH219-166K 193 + tataacagttgatagactcccc 214(1) XENTR_NM_0010074 193 + tataacagttgatagactcccc 214(1) ********************** Finished Wed Dec 9 11:25:28 2009 Elapsed time 00:01 Max memory 17Mb