Index of /users/BCH394P_364C_2024

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]1832HumanProteins.fasta2024-01-12 08:08 1.1M 
[TXT]1832HumanProteinsCFMS.txt2024-01-12 08:08 7.3M 
[TXT]1832HumanProteinsPhyloprofiles.txt2024-01-12 08:08 459K 
[ ]2019StateOfGeneAnnotation.pdf2024-01-12 08:08 306K 
[ ]2020-03-NGS_IntroForEdM.pdf2024-01-12 08:08 4.1M 
[ ]2022-03-NGS_IntroForEdM.pdf2024-01-12 08:08 3.8M 
[ ]2022-03-NGS_IntroForEdM.pptx2024-01-12 08:08 3.9M 
[ ]2022-03-ProteinStructurePrediction_CaitieMcCafferty.pdf2024-01-12 08:08 2.8M 
[ ]2023-02-NGS_IntroForEdM.pdf2024-01-12 08:08 3.9M 
[ ]2001967Slides-FINAL.ppt2024-01-12 08:08 1.2M 
[ ]AICommentary_2024.pdf2024-01-29 11:45 728K 
[ ]AMLALLclassification.pdf2024-01-12 08:08 470K 
[ ]AaronFeller_2024-04-04_TeachingLanguageModelstoSpeakBiology.pdf2024-04-04 15:29 2.6M 
[ ]AaronFeller_2024-04-04_TeachingLanguageModelstoSpeakBiology.pptx2024-04-04 15:29 9.2M 
[ ]Affy1.pdf2024-01-12 08:08 1.4M 
[ ]Affy2.pdf2024-01-12 08:08 1.3M 
[ ]AlignAce.pdf2024-01-12 08:08 888K 
[ ]AssessORF.pdf2024-01-12 08:08 918K 
[ ]BCH364C-394P-Spring2024-SequenceAlignment.pdf2024-01-29 11:45 1.4M 
[ ]BCH364C-394P-Spring2024-SequenceAlignment.pptx2024-01-29 11:45 8.9M 
[ ]BCH364C-394P_ProblemSet1_Spring2024.pdf2024-01-24 17:03 28K 
[ ]BCH394P-364C-BLAST-Spring2024.pdf2024-01-31 11:34 579K 
[ ]BCH394P-364C-BLAST-Spring2024.ppt2024-01-31 11:34 1.0M 
[ ]BCH394P-364C-BiologicalDatabases-Spring2024.pdf2024-02-05 17:29 147K 
[ ]BCH394P-364C-BiologicalDatabases-Spring2024.pptx2024-02-05 17:29 126K 
[ ]BCH394P-364C-GeneFinding-Spring2024.pdf2024-02-19 10:33 3.1M 
[ ]BCH394P-364C-GeneFinding-Spring2024.pptx2024-02-19 10:33 7.2M 
[ ]BCH394P-364C-GenomeAssembly_Spring2024.pdf2024-03-05 09:05 2.4M 
[ ]BCH394P-364C-GenomeAssembly_Spring2024.pptx2024-03-05 09:05 6.6M 
[ ]BCH394P-364C-HMMs-Spring2024.pdf2024-02-06 18:19 719K 
[ ]BCH394P-364C-HMMs-Spring2024.pptx2024-02-06 18:19 1.4M 
[ ]BCH394P-364C-IntroAndRosalind-Spring2024.pdf2024-01-12 09:10 1.6M 
[ ]BCH394P-364C-IntroAndRosalind-Spring2024.pptx2024-01-12 09:10 18M 
[ ]BCH394P-364C-PythonPrimer-Spring2024.pdf2024-01-23 13:33 546K 
[ ]BCH394P-364C-PythonPrimer-Spring2024.pptx2024-01-23 13:33 1.4M 
[ ]BCH394P-364C_Motifs_Spring2024.pdf2024-02-19 11:03 1.1M 
[ ]BCH394P-364C_Motifs_Spring2024.pptx2024-02-19 11:03 2.3M 
[ ]BCH394P-364C_PCA_Spring2024.pdf2024-03-27 18:35 828K 
[ ]BCH394P-364C_PCA_Spring2024.pptx2024-03-27 18:35 2.9M 
[ ]BCH394P-364C_Phenologs_Spring2024.pdf2024-04-11 10:35 1.5M 
[ ]BCH394P-364C_Phenologs_Spring2024.pptx2024-04-11 10:35 20M 
[ ]BCH394P-364C_ProblemSet2_Spring2024.docx2024-02-12 10:19 68K 
[ ]BCH394P-364C_ProblemSet2_Spring2024.pdf2024-02-12 10:19 60K 
[ ]BCH394P-364C_Spring2024_syllabus.pdf2024-01-12 08:13 61K 
[ ]BCH394P-364C_SyntheticBio_Spring2024.pdf2024-04-15 18:18 6.9M 
[ ]BCH394P-364C_SyntheticBio_Spring2024.pptx2024-04-15 18:19 28M 
[ ]BCH394P_364C_Classifiers_Spring2024.pdf2024-03-26 09:37 1.7M 
[ ]BCH394P_364C_Classifiers_Spring2024.pptx2024-03-26 09:37 11M 
[ ]BCH394P_364C_LargeScaleExperiments_Spring2024.pdf2024-03-19 09:13 2.5M 
[ ]BCH394P_364C_LargeScaleExperiments_Spring2024.pptx2024-03-19 09:13 6.3M 
[ ]BLAST.pdf2024-01-12 08:08 533K 
[ ]BLOSUM62Miscalculations.pdf2024-01-12 08:08 182K 
[ ]BLOSUM_paper.pdf2024-01-12 08:08 1.0M 
[ ]BWApaper.pdf2024-01-12 08:08 258K 
[ ]BacterialPhotography.pdf2024-01-12 08:08 297K 
[ ]BayesPrimer-NatMethods.pdf2024-01-12 08:08 291K 
[ ]Bcelllymphoma.pdf2024-01-12 08:08 588K 
[ ]BioinformaticsClass_sp2017.pdf2024-01-12 08:08 948K 
[ ]BioinformaticsClass_sp2017.pptx2024-01-12 08:08 3.5M 
[ ]Broad-Cal-Decision-on-Motions.pdf2024-01-12 08:08 411K 
[ ]BurgeKarlin-main.pdf2024-01-12 08:08 385K 
[ ]ChIP-chipReview.pdf2024-01-12 08:08 617K 
[ ]ChIP-profiling-review.pdf2024-01-12 08:08 2.3M 
[ ]ChiPSeqReview.pdf2024-01-12 08:08 961K 
[ ]ChoosingAProblemInScienceAndEngineering.pdf2024-04-12 14:01 1.9M 
[ ]ChurchOmicsEditorial.pdf2024-01-12 08:08 513K 
[ ]CiliaPhyloProfiles.pdf2024-01-12 08:08 1.6M 
[ ]ClaireMcWhite-BCH394p-364c_2022.pdf2024-01-12 08:08 1.0M 
[ ]CompleteHumanGenomeSequence.pdf2024-01-12 08:08 2.6M 
[ ]ComputationalProteinDesign_Spring2024.pdf2024-04-09 10:30 1.5M 
[ ]ComputationalProteinDesign_Spring2024.pptx2024-04-09 10:30 26M 
[ ]ComputersMarsOrganismsVenus.pdf2024-01-12 08:08 141K 
[IMG]DDD-Figure2.jpg2024-01-12 08:08 64K 
[ ]DNASeqOverview.pdf2024-01-12 08:08 1.0M 
[ ]DarylBarth_ProteinStructPredict_Bioinformatics_Apr2_2024.pdf2024-04-03 18:32 2.2M 
[ ]DarylBarth_ProteinStructPredict_Bioinformatics_Apr2_2024.pptx2024-04-03 18:31 20M 
[ ]DeBruijnPrimer.pdf2024-01-12 08:08 416K 
[ ]DeBruijnSupplement.pdf2024-01-12 08:08 140K 
[ ]DeRisi.pdf2024-01-12 08:08 643K 
[ ]DeepLearningPfamDomains.pdf2024-01-12 08:08 2.6M 
[ ]DeepNN-MotifFinders-2020Review.pdf2024-02-22 09:40 1.0M 
[TXT]Dinuc_in_python.txt2024-01-12 08:08 815  
[ ]ESMFold_2023.pdf2024-04-09 10:30 4.7M 
[ ]ESTs.pdf2024-01-12 08:08 1.5M 
[ ]EVcouplings.pdf2024-01-12 08:08 1.4M 
[TXT]EcoliGenome.txt2024-01-23 13:33 4.5M 
[TXT]Ecoli_genome.txt2024-01-12 08:08 4.5M 
[ ]EdgeDetector.pdf2024-01-12 08:08 359K 
[IMG]EllingtonDNAFab.jpg2024-01-12 08:08 274K 
[ ]EukGeneAnnotation.pdf2024-01-12 08:08 502K 
[ ]EuropeSNPs.pdf2024-01-12 08:08 2.0M 
[ ]EuropeanGenesPCA.pdf2024-01-12 08:08 2.1M 
[IMG]FactAndFictionInAlignment.png2024-01-12 08:08 544K 
[ ]Fedoroff.pdf2024-01-12 08:08 622K 
[ ]FetalAneuploidyDiagnostics.pdf2024-01-12 08:08 377K 
[ ]FetalAneuploidyTrial.pdf2024-01-12 08:08 305K 
[ ]FoldSeek_NBT_2023.pdf2024-01-31 11:33 6.7M 
[ ]FuzzyK-Means.pdf2024-01-12 08:08 3.5M 
[ ]GALPAS.xls2024-01-12 08:08 119K 
[ ]GeneDossierAssignment.pdf2024-01-12 08:08 79K 
[ ]GeneMark.hmm.pdf2024-01-12 08:08 130K 
[ ]GeneMark.pdf2024-01-12 08:08 734K 
[ ]GenomeTransplantation.pdf2024-01-12 08:08 571K 
[ ]GibbsSampling.pdf2024-01-12 08:08 2.0M 
[ ]GoodEnoughPracticesInScientificComputing.pdf2024-01-12 08:08 2.0M 
[ ]GuestLecture_NGS.pdf2024-01-12 08:08 21M 
[ ]GuestLecture_Orthology_Spring2017.pdf2024-01-12 08:08 948K 
[ ]GuestLecture_Orthology_Spring2017.pptx2024-01-12 08:08 3.5M 
[TXT]Hinfluenzae.txt2024-01-12 08:08 1.8M 
[ ]HumanMetabolicReactionNetwork-2013.pdf2024-01-12 08:08 1.7M 
[ ]IntroToPCA.pdf2024-01-12 08:08 491K 
[ ]IntroToProteomics2-03-24-2022.pdf2024-01-12 08:08 4.9M 
[ ]JCVI-1.0.pdf2024-01-12 08:08 506K 
[ ]K-means-Example.ppt2024-01-12 08:08 73K 
[ ]LanderGolubPatentOnExpressionClassification.pdf2024-01-12 08:08 3.5M 
[ ]MachineLearningReview.pdf2024-01-12 08:08 251K 
[ ]Mgene12024-01-12 08:08 60K 
[ ]Mgene22024-01-12 08:08 60K 
[ ]Mgene32024-01-12 08:08 60K 
[ ]MichaelHoffman.pdf2024-01-12 08:08 476K 
[ ]MinimalMycoplasma-2016.pdf2024-01-12 08:08 1.7M 
[ ]MinionHumanGenome.pdf2024-01-12 08:08 1.2M 
[ ]MultiplexDeBruijnGraphs.pdf2024-01-12 08:08 1.6M 
[TXT]MysteryGene1.txt2024-01-12 08:08 912  
[TXT]MysteryGene2.txt2024-01-12 08:08 1.7K 
[TXT]MysteryGene3.txt2024-01-12 08:08 748  
[ ]NBTPrimer-BLOSUM.pdf2024-01-12 08:08 187K 
[ ]NBTPrimer-Bayes.pdf2024-01-12 08:08 91K 
[ ]NBTPrimer-DynamicProgramming.pdf2024-01-12 08:08 198K 
[ ]NBTPrimer-HMMs.pdf2024-01-12 08:08 189K 
[ ]NBTPrimer-MicroarrayClustering.pdf2024-01-12 08:08 325K 
[ ]NBTPrimer-NetworkVisualization.pdf2024-01-12 08:08 355K 
[ ]NBTPrimer_GenerativeProteinDesign.pdf2024-04-09 10:31 1.2M 
[ ]NBTPrimer_ProteinLanguageModels.pdf2024-04-09 10:31 1.2M 
[ ]NBT_primer_PCA.pdf2024-01-12 08:08 289K 
[ ]NetworkBiologyReview.pdf2024-01-12 08:08 3.6M 
[ ]NewCellFromChemicalGenome.SOM.pdf2024-01-12 08:08 10M 
[ ]NewCellFromChemicalGenome.pdf2024-01-12 08:08 611K 
[ ]NewEcoli_genome.fasta2024-01-23 13:33 4.5M 
[TXT]NewEcoli_genome.txt2024-01-12 08:08 4.6M 
[ ]Nucl. Acids Res.-2014-Kheradpour-2976-87.pdf2024-01-12 08:08 1.3M 
[ ]OMA.pdf2024-01-12 08:08 288K 
[ ]OneStepAssemblyInYeast.pdf2024-01-12 08:08 689K 
[IMG]PHGinMoMA.png2024-01-12 08:08 1.5M 
[ ]PNAS-2014-Lee-1313039111.pdf2024-01-12 08:08 2.0M 
[ ]PNAS_Phenologs_2010.pdf2024-01-12 08:08 1.1M 
[ ]PNAS_Phenologs_2010_Supplement.pdf2024-01-12 08:08 1.3M 
[ ]PNAS_phylogenetic_profiles.pdf2024-01-12 08:08 98K 
[ ]PPIsAndDiseaseReview.pdf2024-01-12 08:08 738K 
[ ]PrincipalComponentAnalysis.docx2024-01-12 08:08 247K 
[ ]ProblemSet3_2020.pdf2024-01-12 08:08 32K 
[ ]ProblemSet3_2022.pdf2024-01-12 08:08 30K 
[ ]ProblemSet3_2023.pdf2024-01-12 08:08 30K 
[ ]ProblemSet3_2024.pdf2024-03-18 16:10 30K 
[ ]ProfileAnalysis.pdf2024-01-12 08:08 803K 
[ ]RFDiffusion_2023.pdf2024-04-09 10:31 35M 
[ ]RoseTTAFoldAllAtom.pdf2024-04-09 10:30 7.8M 
[ ]RosettaOverview.pdf2024-01-12 08:08 5.2M 
[ ]RosettaReview.pdf2024-01-12 08:08 2.9M 
[ ]SAGE.pdf2024-01-12 08:08 1.0M 
[ ]SOM-geneexpression.pdf2024-01-12 08:08 364K 
[ ]Science-2014-Annaluru-55-8.pdf2024-01-12 08:08 1.1M 
[ ]Science-2014-Bohannon-475.pdf2024-01-12 08:08 153K 
[ ]Science_Zack.pdf2024-01-12 08:08 233K 
[ ]Sonnhammer2002TiG.pdf2024-01-12 08:08 29K 
[ ]Spellman.pdf2024-01-12 08:08 1.5M 
[ ]SplicingAI-jaganathan2019.pdf2024-01-12 08:08 4.5M 
[ ]StatisticsPrimer.pdf2024-01-12 08:08 921K 
[ ]StrainsFromYeastGenomicClones.pdf2024-01-12 08:08 235K 
[ ]StringGraphAssembly.pdf2024-01-12 08:08 163K 
[ ]Study-2017-Nature.pdf2024-01-12 08:08 2.6M 
[VID]Supplemental Movie 1.m4v2024-01-12 08:08 2.5M 
[VID]Supplemental Movie 2.m4v2024-01-12 08:08 2.4M 
[VID]Supplemental Movie 3.m4v2024-01-12 08:08 2.2M 
[ ]SurgeonsTransplantPigKidneyIntoaPatientAMedicalMilestone-TheNewYorkTimes.pdf2024-03-25 15:11 1.7M 
[ ]SyntheticEcoliGenome.pdf2024-04-15 18:19 2.7M 
[ ]SyntheticFlagellum.pdf2024-01-12 08:08 1.3M 
[TXT]Taquaticus.txt2024-01-12 08:08 2.1M 
[TXT]Tvolcanium_genome.txt2024-01-12 08:08 1.5M 
[ ]UTiGEM2012.pdf2024-01-12 08:08 3.3M 
[ ]WalktrapAlgorithm.pdf2024-01-12 08:08 323K 
[ ]WekaIntroChapter.pdf2024-01-12 08:08 652K 
[ ]YeastSGA-2016.pdf2024-01-12 08:08 3.8M 
[ ]YeastSynthCsome.pdf2024-01-12 08:08 635K 
[ ]bio337_feb18_ngs.pdf2024-01-12 08:08 21M 
[ ]codinghour_flyer_spring2022.pdf2024-01-12 08:08 591K 
[VID]diffusion_animation_PTHbinder_v6.mp42024-04-09 10:30 5.3M 
[ ]eisen.pdf2024-01-12 08:08 934K 
[ ]fastq_runid_fbea4bea7410dfda4bf285ff8f07fef0c49a6b4f_0.fastq.gz2024-01-12 08:08 30M 
[ ]fastq_runid_fbea4bea7410dfda4bf285ff8f07fef0c49a6b4f_1.fastq.gz2024-01-12 08:08 30M 
[ ]fastq_runid_fbea4bea7410dfda4bf285ff8f07fef0c49a6b4f_2.fastq.gz2024-01-12 08:08 12M 
[ ]humap2_protein_complex_map_20200821.cys2024-01-12 08:08 7.9M 
[ ]ismb94.pdf2024-01-12 08:08 167K 
[ ]journal.pbio.1001014.pdf2024-01-12 08:08 752K 
[VID]media-2.mp42024-01-12 08:08 927K 
[ ]nature_review_2000.pdf2024-01-12 08:08 222K 
[ ]nbt.2510.pdf2024-01-12 08:08 539K 
[ ]nbt0406-423-primer-whataremotifs.pdf2024-01-12 08:08 211K 
[ ]nbt0806-959-primer-howdoesmotifdiscoverywork.pdf2024-01-12 08:08 155K 
[TXT]presentations.txt2024-01-12 08:08 1.5K 
[ ]repressilator.pdf2024-01-12 08:08 728K 
[ ]s41586-021-04332-2.pdf2024-01-12 08:08 20M 
[ ]sciruby-slide.pdf2024-01-12 08:08 176K 
[ ]soluble_sequences2024-01-12 08:08 328K 
[ ]state_sequences2024-01-12 08:08 410K 
[ ]structbio_lecture_BCH339N_2016.pptx2024-01-12 08:08 13M 
[ ]synthetic-biology-genome-engineering-2-2014.ppt2024-01-12 08:08 1.0M 
[ ]tSNE.pdf2024-01-12 08:08 3.5M 
[VID]tastiger1_bb.mp42024-01-12 08:08 5.8M 
[ ]transmembrane_sequences2024-01-12 08:08 91K 
[ ]vonmering.pdf2024-01-12 08:08 164K 
[ ]yeast_aaseqs2024-01-12 08:08 3.0M 
[TXT]yeast_cofractionationdata.txt2024-01-12 08:08 1.0M 
[ ]yeast_microarraydata2024-01-12 08:08 11M 
[TXT]yeast_microarraydata2.txt2024-01-12 08:08 11M 
[TXT]yeast_microarraydata3.txt2024-01-12 08:08 11M 
[ ]yeast_phyloprofiles2024-01-12 08:08 6.0M 
[TXT]yeast_phyloprofiles2.txt2024-01-12 08:08 5.9M 
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