Index of /users/BCH394P_364C_2025

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]MysteryGene3.txt2025-01-03 14:18 748  
[TXT]Dinuc_in_python.txt2025-01-03 14:18 815  
[TXT]MysteryGene1.txt2025-01-03 14:18 912  
[TXT]presentations.txt2025-01-03 14:18 1.5K 
[TXT]MysteryGene2.txt2025-01-03 14:18 1.7K 
[ ]BCH364C-394P_ProblemSet1_Spring2024.pdf2025-01-03 14:18 28K 
[ ]BCH364C-394P_ProblemSet1_Spring2025.pdf2025-01-27 16:15 29K 
[ ]Sonnhammer2002TiG.pdf2025-01-03 14:18 29K 
[ ]ProblemSet3_2023.pdf2025-01-03 14:18 30K 
[ ]ProblemSet3_2025.pdf2025-03-10 15:46 30K 
[ ]ProblemSet3_2022.pdf2025-01-03 14:18 30K 
[ ]ProblemSet3_2024.pdf2025-01-03 14:18 30K 
[ ]ProblemSet3_2020.pdf2025-01-03 14:18 32K 
[ ]Mgene12025-01-03 14:18 60K 
[ ]Mgene22025-01-03 14:18 60K 
[ ]Mgene32025-01-03 14:18 60K 
[ ]BCH394P-364C_ProblemSet2_Spring2024.pdf2025-01-03 14:18 60K 
[ ]BCH394P-364C_ProblemSet2_Spring2025.pdf2025-02-12 17:29 60K 
[ ]BCH394P-364C_Spring2024_syllabus.pdf2025-01-03 14:18 61K 
[ ]BCH394P-364C_Spring2025_syllabus.pdf2025-01-08 18:01 61K 
[IMG]DDD-Figure2.jpg2025-01-03 14:18 64K 
[ ]BCH394P-364C_ProblemSet2_Spring2024.docx2025-01-03 14:18 68K 
[ ]K-means-Example.ppt2025-01-03 14:18 73K 
[ ]GeneDossierAssignment.pdf2025-01-03 14:18 79K 
[ ]NBTPrimer-Bayes.pdf2025-01-03 14:18 91K 
[ ]transmembrane_sequences2025-01-03 14:18 91K 
[ ]PNAS_phylogenetic_profiles.pdf2025-01-03 14:18 98K 
[ ]GALPAS.xls2025-01-03 14:18 119K 
[ ]BCH394P-364C-BiologicalDatabases-Spring2024.pptx2025-01-03 14:18 126K 
[ ]GeneMark.hmm.pdf2025-01-03 14:18 130K 
[ ]DeBruijnSupplement.pdf2025-01-03 14:18 140K 
[ ]ComputersMarsOrganismsVenus.pdf2025-01-03 14:18 141K 
[ ]BCH394P-364C-BiologicalDatabases-Spring2025.pptx2025-02-05 19:32 145K 
[ ]BCH394P-364C-BiologicalDatabases-Spring2024.pdf2025-01-03 14:18 147K 
[ ]Science-2014-Bohannon-475.pdf2025-01-03 14:18 153K 
[ ]nbt0806-959-primer-howdoesmotifdiscoverywork.pdf2025-01-03 14:18 155K 
[ ]StringGraphAssembly.pdf2025-01-03 14:18 163K 
[ ]vonmering.pdf2025-01-03 14:18 164K 
[ ]BCH394P-364C-BiologicalDatabases-Spring2025.pdf2025-02-05 19:32 164K 
[ ]ismb94.pdf2025-01-03 14:18 167K 
[ ]sciruby-slide.pdf2025-01-03 14:18 176K 
[ ]BLOSUM62Miscalculations.pdf2025-01-03 14:18 182K 
[ ]NBTPrimer-BLOSUM.pdf2025-01-03 14:18 187K 
[ ]NBTPrimer-HMMs.pdf2025-01-03 14:18 189K 
[ ]NBTPrimer-DynamicProgramming.pdf2025-01-03 14:18 198K 
[ ]nbt0406-423-primer-whataremotifs.pdf2025-01-03 14:18 211K 
[ ]nature_review_2000.pdf2025-01-03 14:18 222K 
[ ]Science_Zack.pdf2025-01-03 14:18 233K 
[ ]StrainsFromYeastGenomicClones.pdf2025-01-03 14:18 235K 
[ ]PrincipalComponentAnalysis.docx2025-01-03 14:18 247K 
[ ]MachineLearningReview.pdf2025-01-03 14:18 251K 
[ ]BWApaper.pdf2025-01-03 14:18 258K 
[IMG]EllingtonDNAFab.jpg2025-01-03 14:18 274K 
[ ]OMA.pdf2025-01-03 14:18 288K 
[ ]NBT_primer_PCA.pdf2025-01-03 14:18 289K 
[ ]BayesPrimer-NatMethods.pdf2025-01-03 14:18 291K 
[ ]BacterialPhotography.pdf2025-01-03 14:18 297K 
[ ]FetalAneuploidyTrial.pdf2025-01-03 14:18 305K 
[ ]2019StateOfGeneAnnotation.pdf2025-01-03 14:18 306K 
[ ]WalktrapAlgorithm.pdf2025-01-03 14:18 323K 
[ ]NBTPrimer-MicroarrayClustering.pdf2025-01-03 14:18 325K 
[ ]soluble_sequences2025-01-03 14:18 328K 
[ ]NBTPrimer-NetworkVisualization.pdf2025-01-03 14:18 355K 
[ ]EdgeDetector.pdf2025-01-03 14:18 359K 
[ ]SOM-geneexpression.pdf2025-01-03 14:18 364K 
[ ]FetalAneuploidyDiagnostics.pdf2025-01-03 14:18 377K 
[ ]BurgeKarlin-main.pdf2025-01-03 14:18 385K 
[ ]state_sequences2025-01-03 14:18 410K 
[ ]Broad-Cal-Decision-on-Motions.pdf2025-01-03 14:18 411K 
[ ]DeBruijnPrimer.pdf2025-01-03 14:18 416K 
[TXT]1832HumanProteinsPhyloprofiles.txt2025-01-03 14:18 459K 
[ ]MMSeqs2_NBT_2017.pdf2025-01-08 18:02 469K 
[ ]AMLALLclassification.pdf2025-01-03 14:18 470K 
[ ]MichaelHoffman.pdf2025-01-03 14:18 476K 
[ ]IntroToPCA.pdf2025-01-03 14:18 491K 
[ ]EukGeneAnnotation.pdf2025-01-03 14:18 502K 
[ ]JCVI-1.0.pdf2025-01-03 14:18 506K 
[ ]ChurchOmicsEditorial.pdf2025-01-03 14:18 513K 
[ ]BLAST.pdf2025-01-03 14:18 533K 
[ ]nbt.2510.pdf2025-01-03 14:18 539K 
[IMG]FactAndFictionInAlignment.png2025-01-03 14:18 544K 
[ ]BCH394P-364C-PythonPrimer-Spring2024.pdf2025-01-03 14:18 546K 
[ ]GenomeTransplantation.pdf2025-01-03 14:18 571K 
[ ]BCH394P-364C-PythonPrimer-Spring2025.pdf2025-01-22 18:58 571K 
[ ]BCH394P-364C-BLAST-Spring2024.pdf2025-01-03 14:18 579K 
[ ]Bcelllymphoma.pdf2025-01-03 14:18 588K 
[ ]codinghour_flyer_spring2022.pdf2025-01-03 14:18 591K 
[ ]NewCellFromChemicalGenome.pdf2025-01-03 14:18 611K 
[ ]ChIP-chipReview.pdf2025-01-03 14:18 617K 
[ ]Fedoroff.pdf2025-01-03 14:18 622K 
[ ]BCH394P-364C-HMMs-Spring2025.pdf2025-02-10 13:39 623K 
[ ]YeastSynthCsome.pdf2025-01-03 14:18 635K 
[ ]DeRisi.pdf2025-01-03 14:18 643K 
[ ]WekaIntroChapter.pdf2025-01-03 14:18 652K 
[ ]IsBLASTathingofthepast.pdf2025-01-08 18:02 667K 
[ ]OneStepAssemblyInYeast.pdf2025-01-03 14:18 689K 
[ ]BCH394P-364C-HMMs-Spring2024.pdf2025-01-03 14:18 719K 
[ ]AICommentary_2024.pdf2025-01-03 14:18 728K 
[ ]repressilator.pdf2025-01-03 14:18 728K 
[ ]GeneMark.pdf2025-01-03 14:18 734K 
[ ]PPIsAndDiseaseReview.pdf2025-01-03 14:18 738K 
[ ]journal.pbio.1001014.pdf2025-01-03 14:18 752K 
[ ]ProfileAnalysis.pdf2025-01-03 14:18 803K 
[ ]BCH394P-364C_PCA_Spring2025.pdf2025-01-03 14:18 828K 
[ ]BCH394P-364C-BLAST-Spring2025.pdf2025-01-08 18:01 846K 
[ ]AlignAce.pdf2025-01-03 14:18 888K 
[ ]AssessORF.pdf2025-01-03 14:18 918K 
[ ]StatisticsPrimer.pdf2025-01-03 14:18 921K 
[VID]media-2.mp42025-01-03 14:18 927K 
[ ]eisen.pdf2025-01-03 14:18 934K 
[ ]BioinformaticsClass_sp2017.pdf2025-01-03 14:18 948K 
[ ]GuestLecture_Orthology_Spring2017.pdf2025-01-03 14:18 948K 
[ ]ChiPSeqReview.pdf2025-01-03 14:18 961K 
[ ]ClaireMcWhite-BCH394p-364c_2022.pdf2025-01-03 14:18 1.0M 
[TXT]yeast_cofractionationdata.txt2025-01-03 14:18 1.0M 
[ ]BCH394P-364C-BLAST-Spring2024.ppt2025-01-03 14:18 1.0M 
[ ]DeepNN-MotifFinders-2020Review.pdf2025-01-03 14:18 1.0M 
[ ]synthetic-biology-genome-engineering-2-2014.ppt2025-01-03 14:18 1.0M 
[ ]SAGE.pdf2025-01-03 14:18 1.0M 
[ ]BLOSUM_paper.pdf2025-01-03 14:18 1.0M 
[ ]DNASeqOverview.pdf2025-01-03 14:18 1.0M 
[ ]Science-2014-Annaluru-55-8.pdf2025-01-03 14:18 1.1M 
[ ]PNAS_Phenologs_2010.pdf2025-01-03 14:18 1.1M 
[ ]BCH394P-364C_Motifs_Spring2024.pdf2025-01-03 14:18 1.1M 
[ ]BCH394P-364C_Motifs_Spring2025.pdf2025-02-24 17:24 1.1M 
[ ]1832HumanProteins.fasta2025-01-03 14:18 1.1M 
[ ]NBTPrimer_ProteinLanguageModels.pdf2025-01-03 14:18 1.2M 
[ ]BCH394P-364C-BLAST-Spring2025.pptx2025-01-08 18:01 1.2M 
[ ]NBTPrimer_GenerativeProteinDesign.pdf2025-01-03 14:18 1.2M 
[ ]2001967Slides-FINAL.ppt2025-01-03 14:18 1.2M 
[ ]MinionHumanGenome.pdf2025-01-03 14:18 1.2M 
[ ]Affy2.pdf2025-01-03 14:18 1.3M 
[ ]BCH394P-364C-HMMs-Spring2025.pptx2025-02-10 13:39 1.3M 
[ ]SyntheticFlagellum.pdf2025-01-03 14:18 1.3M 
[ ]PNAS_Phenologs_2010_Supplement.pdf2025-01-03 14:18 1.3M 
[ ]Nucl. Acids Res.-2014-Kheradpour-2976-87.pdf2025-01-03 14:18 1.3M 
[ ]BCH394P-364C-PythonPrimer-Spring2024.pptx2025-01-03 14:18 1.4M 
[ ]Affy1.pdf2025-01-03 14:18 1.4M 
[ ]BCH394P-364C-PythonPrimer-Spring2025.pptx2025-01-22 18:58 1.4M 
[ ]BCH364C-394P-Spring2024-SequenceAlignment.pdf2025-01-03 14:18 1.4M 
[ ]BCH394P-364C-HMMs-Spring2024.pptx2025-01-03 14:18 1.4M 
[ ]EVcouplings.pdf2025-01-03 14:18 1.4M 
[ ]BCH364C-394P-Spring2025-SequenceAlignment.pdf2025-01-27 16:15 1.4M 
[IMG]PHGinMoMA.png2025-01-03 14:18 1.5M 
[ ]ESTs.pdf2025-01-03 14:18 1.5M 
[ ]ComputationalProteinDesign_Spring2024.pdf2025-01-03 14:18 1.5M 
[ ]ComputationalProteinDesign_Spring2025.pdf2025-04-07 16:34 1.5M 
[ ]Spellman.pdf2025-01-03 14:18 1.5M 
[ ]BCH394P-364C_Phenologs_Spring2024.pdf2025-01-03 14:18 1.5M 
[TXT]Tvolcanium_genome.txt2025-01-03 14:18 1.5M 
[ ]BCH394P-364C_Phenologs_Spring2025.pdf2025-04-09 13:55 1.6M 
[ ]BCH394P-364C-IntroAndRosalind-Spring2024.pdf2025-01-03 14:18 1.6M 
[ ]CiliaPhyloProfiles.pdf2025-01-03 14:18 1.6M 
[ ]MultiplexDeBruijnGraphs.pdf2025-01-03 14:18 1.6M 
[ ]SurgeonsTransplantPigKidneyIntoaPatientAMedicalMilestone-TheNewYorkTimes.pdf2025-01-03 14:18 1.7M 
[ ]HumanMetabolicReactionNetwork-2013.pdf2025-01-03 14:18 1.7M 
[ ]MinimalMycoplasma-2016.pdf2025-01-03 14:18 1.7M 
[ ]BCH394P_364C_Classifiers_Spring2024.pdf2025-01-03 14:18 1.7M 
[TXT]Hinfluenzae.txt2025-01-03 14:18 1.8M 
[ ]ChoosingAProblemInScienceAndEngineering.pdf2025-01-03 14:18 1.9M 
[ ]BCH394P_364C_Classifiers_Spring2025.pdf2025-03-24 19:26 1.9M 
[ ]GoodEnoughPracticesInScientificComputing.pdf2025-01-03 14:18 2.0M 
[ ]GibbsSampling.pdf2025-01-03 14:18 2.0M 
[ ]BCH394P-364C-IntroAndRosalind-Spring2025.pdf2025-01-08 18:02 2.0M 
[ ]PNAS-2014-Lee-1313039111.pdf2025-01-03 14:18 2.0M 
[ ]EuropeSNPs.pdf2025-01-03 14:18 2.0M 
[TXT]Taquaticus.txt2025-01-03 14:18 2.1M 
[ ]EuropeanGenesPCA.pdf2025-01-03 14:18 2.1M 
[ ]Supplemental Movie 3.m4v2025-01-03 14:18 2.2M 
[ ]DarylBarth_ProteinStructPredict_Bioinformatics_Apr2_2024.pdf2025-01-03 14:18 2.2M 
[ ]BCH394P-364C_Motifs_Spring2024.pptx2025-01-03 14:18 2.3M 
[ ]BCH394P-364C_Motifs_Spring2025.pptx2025-02-24 17:24 2.3M 
[ ]ChIP-profiling-review.pdf2025-01-03 14:18 2.3M 
[ ]Supplemental Movie 2.m4v2025-01-03 14:18 2.4M 
[ ]BCH394P-364C-GenomeAssembly_Spring2024.pdf2025-01-03 14:18 2.4M 
[ ]BCH394P-364C-GenomeAssembly_Spring2025.pdf2025-03-05 19:58 2.4M 
[ ]Supplemental Movie 1.m4v2025-01-03 14:18 2.5M 
[ ]BCH394P_364C_LargeScaleExperiments_Spring2024.pdf2025-01-03 14:18 2.5M 
[ ]BCH394P_364C_LargeScaleExperiments_Spring2025.pdf2025-03-10 09:02 2.5M 
[ ]AaronFeller_2024-04-04_TeachingLanguageModelstoSpeakBiology.pdf2025-01-03 14:18 2.6M 
[ ]Study-2017-Nature.pdf2025-01-03 14:18 2.6M 
[ ]CompleteHumanGenomeSequence.pdf2025-01-03 14:18 2.6M 
[ ]DeepLearningPfamDomains.pdf2025-01-03 14:18 2.6M 
[ ]SyntheticEcoliGenome.pdf2025-01-03 14:18 2.7M 
[ ]2022-03-ProteinStructurePrediction_CaitieMcCafferty.pdf2025-01-03 14:18 2.8M 
[ ]RosettaReview.pdf2025-01-03 14:18 2.9M 
[ ]BCH394P-364C-GeneFinding-Spring2025.pdf2025-02-17 18:00 2.9M 
[ ]BCH394P-364C_PCA_Spring2025.pptx2025-01-03 14:18 2.9M 
[ ]yeast_aaseqs2025-01-03 14:18 3.0M 
[ ]BCH394P-364C-GeneFinding-Spring2024.pdf2025-01-03 14:18 3.1M 
[ ]UTiGEM2012.pdf2025-01-03 14:18 3.3M 
[ ]LanderGolubPatentOnExpressionClassification.pdf2025-01-03 14:18 3.5M 
[ ]FuzzyK-Means.pdf2025-01-03 14:18 3.5M 
[ ]BioinformaticsClass_sp2017.pptx2025-01-03 14:18 3.5M 
[ ]GuestLecture_Orthology_Spring2017.pptx2025-01-03 14:18 3.5M 
[ ]tSNE.pdf2025-01-03 14:18 3.5M 
[ ]NetworkBiologyReview.pdf2025-01-03 14:18 3.6M 
[ ]2025-02-NGS_IntroForEdM.pdf2025-02-28 08:59 3.7M 
[ ]2022-03-NGS_IntroForEdM.pdf2025-01-03 14:18 3.8M 
[ ]YeastSGA-2016.pdf2025-01-03 14:18 3.8M 
[ ]2023-02-NGS_IntroForEdM.pdf2025-01-03 14:18 3.9M 
[ ]2022-03-NGS_IntroForEdM.pptx2025-01-03 14:18 3.9M 
[ ]2020-03-NGS_IntroForEdM.pdf2025-01-03 14:18 4.1M 
[TXT]EcoliGenome.txt2025-01-03 14:18 4.5M 
[ ]NewEcoli_genome.fasta2025-01-03 14:18 4.5M 
[TXT]Ecoli_genome.txt2025-01-03 14:18 4.5M 
[ ]SplicingAI-jaganathan2019.pdf2025-01-03 14:18 4.5M 
[TXT]NewEcoli_genome.txt2025-01-03 14:18 4.6M 
[ ]ESMFold_2023.pdf2025-01-03 14:18 4.7M 
[ ]IntroToProteomics2-03-24-2022.pdf2025-01-03 14:18 4.9M 
[ ]ProteinStructPredict_Bioinformatics_Apr1_2025.pdf2025-04-01 13:54 4.9M 
[ ]RosettaOverview.pdf2025-01-03 14:18 5.2M 
[VID]diffusion_animation_PTHbinder_v6.mp42025-01-03 14:18 5.3M 
[VID]tastiger1_bb.mp42025-01-03 14:18 5.8M 
[ ]BCH394P-364C-GeneFinding-Spring2025.pptx2025-02-17 18:00 5.9M 
[TXT]yeast_phyloprofiles2.txt2025-01-03 14:18 5.9M 
[ ]yeast_phyloprofiles2025-01-03 14:18 6.0M 
[ ]BCH394P-364C_SyntheticBio_Spring2025.pdf2025-04-15 09:05 6.2M 
[ ]BCH394P_364C_LargeScaleExperiments_Spring2025.pptx2025-03-10 09:02 6.3M 
[ ]BCH394P_364C_LargeScaleExperiments_Spring2024.pptx2025-01-03 14:18 6.3M 
[ ]BCH394P-364C-GenomeAssembly_Spring2024.pptx2025-01-03 14:18 6.6M 
[ ]BCH394P-364C-GenomeAssembly_Spring2025.pptx2025-03-05 19:58 6.6M 
[ ]FoldSeek_NBT_2023.pdf2025-01-03 14:18 6.7M 
[ ]BCH394P-364C_SyntheticBio_Spring2024.pdf2025-01-03 14:18 6.9M 
[ ]BCH394P-364C-GeneFinding-Spring2024.pptx2025-01-03 14:18 7.2M 
[TXT]1832HumanProteinsCFMS.txt2025-01-03 14:18 7.3M 
[ ]RoseTTAFoldAllAtom.pdf2025-01-03 14:18 7.8M 
[ ]humap2_protein_complex_map_20200821.cys2025-01-03 14:18 7.9M 
[ ]BCH364C-394P-Spring2025-SequenceAlignment.pptx2025-01-27 16:15 8.9M 
[ ]BCH364C-394P-Spring2024-SequenceAlignment.pptx2025-01-03 14:18 8.9M 
[ ]AaronFeller_2024-04-04_TeachingLanguageModelstoSpeakBiology.pptx2025-01-03 14:18 9.2M 
[ ]2025-04-03_AaronFeller_TeachingLanguageModelstoSpeakBiology.pptx2025-04-03 14:17 10M 
[ ]NewCellFromChemicalGenome.SOM.pdf2025-01-03 14:18 10M 
[ ]BCH394P_364C_Classifiers_Spring2024.pptx2025-01-03 14:18 11M 
[ ]BCH394P_364C_Classifiers_Spring2025.pptx2025-03-24 19:26 11M 
[TXT]yeast_microarraydata3.txt2025-01-03 14:18 11M 
[TXT]yeast_microarraydata2.txt2025-01-03 14:18 11M 
[ ]yeast_microarraydata2025-01-03 14:18 11M 
[ ]fastq_runid_fbea4bea7410dfda4bf285ff8f07fef0c49a6b4f_2.fastq.gz2025-01-03 14:18 12M 
[ ]structbio_lecture_BCH339N_2016.pptx2025-01-03 14:18 13M 
[ ]BCH394P-364C-IntroAndRosalind-Spring2024.pptx2025-01-03 14:18 18M 
[ ]s41586-021-04332-2.pdf2025-01-03 14:18 20M 
[ ]BCH394P-364C_Phenologs_Spring2024.pptx2025-01-03 14:18 20M 
[ ]BCH394P-364C_Phenologs_Spring2025.pptx2025-04-09 13:55 20M 
[ ]DarylBarth_ProteinStructPredict_Bioinformatics_Apr2_2024.pptx2025-01-03 14:18 20M 
[ ]BCH394P-364C-IntroAndRosalind-Spring2025.pptx2025-01-08 18:02 21M 
[ ]GuestLecture_NGS.pdf2025-01-03 14:18 21M 
[ ]bio337_feb18_ngs.pdf2025-01-03 14:18 21M 
[ ]ComputationalProteinDesign_Spring2024.pptx2025-01-03 14:18 26M 
[ ]ComputationalProteinDesign_Spring2025.pptx2025-04-07 16:33 27M 
[ ]BCH394P-364C_SyntheticBio_Spring2024.pptx2025-01-03 14:18 28M 
[ ]fastq_runid_fbea4bea7410dfda4bf285ff8f07fef0c49a6b4f_0.fastq.gz2025-01-03 14:18 30M 
[ ]fastq_runid_fbea4bea7410dfda4bf285ff8f07fef0c49a6b4f_1.fastq.gz2025-01-03 14:18 30M 
[ ]BCH394P-364C_SyntheticBio_Spring2025.pptx2025-04-15 09:05 31M 
[ ]RFDiffusion_2023.pdf2025-01-03 14:18 35M 
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